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PDB: 51630 results

7WDM
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BU of 7wdm by Molmil
Fungal immunomodulatory protein FIP-gmi
Descriptor: Immunomodulatory protein
Authors:Liu, Y, Bastiaan-Net, S, Zhang, Y, Hoppenbrouwers, T, Xie, Y, Wang, Y, Wei, X, Du, G, Zhang, H, Imam, K.M.S.U, Wichers, H.J, Li, Z.
Deposit date:2021-12-22
Release date:2022-12-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.123 Å)
Cite:Linking the thermostability of FIP-nha (Nectria haematococca) to its structural properties
To Be Published
7WF0
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BU of 7wf0 by Molmil
The 0.83 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with nervonic acid
Descriptor: (15E)-TETRACOS-15-ENOIC ACID, Fatty acid-binding protein, heart, ...
Authors:Sugiyama, S, Kakinouchi, K, Nakano, R, Matsuoka, S, Tsuchikawa, H, Sonoyama, M, Inoue, Y, Hayashi, F, Murata, M.
Deposit date:2021-12-24
Release date:2022-12-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (0.83 Å)
Cite:The 0.83 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with nervonic acid
To Be Published
7WPW
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BU of 7wpw by Molmil
The 0.97 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with pentadecanoic acid
Descriptor: Fatty acid-binding protein, heart, HEXAETHYLENE GLYCOL, ...
Authors:Sugiyama, S, Matsuoka, S, Tsuchikawa, H, Sonoyama, M, Inoue, Y, Hayashi, F, Murata, M.
Deposit date:2022-01-24
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:The 0.97 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with pentadecanoic acid
To Be Published
7WQ7
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BU of 7wq7 by Molmil
The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with nonadecanoic acid
Descriptor: Fatty acid-binding protein, heart, HEXAETHYLENE GLYCOL, ...
Authors:Sugiyama, S, Matsuoka, S, Tsuchikawa, H, Sonoyama, M, Inoue, Y, Hayashi, F, Murata, M.
Deposit date:2022-01-24
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with nonadecanoic acid
To Be Published
6U47
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BU of 6u47 by Molmil
Coiled-coil Trimer with Glu:Ala:Lys Triad
Descriptor: peptide with Glu:Ala:Lys triad
Authors:Smith, M.S, Stern, K.L, Billings, W.M, Price, J.L.
Deposit date:2019-08-23
Release date:2020-04-29
Last modified:2020-05-20
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Context-Dependent Stabilizing Interactions among Solvent-Exposed Residues along the Surface of a Trimeric Helix Bundle.
Biochemistry, 59, 2020
7YJJ
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BU of 7yjj by Molmil
Human Cytosolic 10-formyltetrahydrofolate dehydrogenase and Gossypol complex
Descriptor: Cytosolic 10-formyltetrahydrofolate dehydrogenase, Gossypol
Authors:Han, C.W, Lee, H.N, Jeong, M.S, Jang, S.B.
Deposit date:2022-07-20
Release date:2023-07-26
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (6.31 Å)
Cite:Structural identification and comprehension of human ALDH1L1-Gossypol complex.
Biochem.Biophys.Res.Commun., 726, 2024
7Y72
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BU of 7y72 by Molmil
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Descriptor: Fab E7 heavy chain, Fab E7 light chain, Spike glycoprotein
Authors:Chia, W.N, Tan, C.W, Tan, A.W.K, Young, B, Starr, T.N, Lopez, E, Fibriansah, G, Barr, J, Cheng, S, Yeoh, A.Y.Y, Yap, W.C, Lim, B.L, Ng, T.S, Sia, W.R, Zhu, F, Chen, S, Zhang, J, Greaney, A.J, Chen, M, Au, G.G, Paradkar, P, Peiris, M, Chung, A.W, Bloom, J.D, Lye, D, Lok, S.M, Wang, L.F.
Deposit date:2022-06-21
Release date:2023-08-02
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:Potent pan huACE2-dependent sarbecovirus neutralizing monoclonal antibodies isolated from a BNT162b2-vaccinated SARS survivor.
Sci Adv, 9, 2023
7Y71
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BU of 7y71 by Molmil
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab E7 heavy chain, ...
Authors:Chia, W.N, Tan, C.W, Tan, A.W.K, Young, B, Starr, T.N, Lopez, E, Fibriansah, G, Barr, J, Cheng, S, Yeoh, A.Y.Y, Yap, W.C, Lim, B.L, Ng, T.S, Sia, W.R, Zhu, F, Chen, S, Zhang, J, Greaney, A.J, Chen, M, Au, G.G, Paradkar, P, Peiris, M, Chung, A.W, Bloom, J.D, Lye, D, Lok, S.M, Wang, L.F.
Deposit date:2022-06-21
Release date:2023-08-02
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Potent pan huACE2-dependent sarbecovirus neutralizing monoclonal antibodies isolated from a BNT162b2-vaccinated SARS survivor.
Sci Adv, 9, 2023
7UMJ
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BU of 7umj by Molmil
Crystal structure of recombinant Solieria filiformis lectin (rSfL)
Descriptor: Lectin SfL-1, SULFATE ION
Authors:Chaves, R.P, Bezerra, E.H.S, da Silva, F.M.S, Carneiro, R.F, Sampaio, A.H, Rocha, B.A.M, Nagano, C.S.
Deposit date:2022-04-07
Release date:2023-10-11
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural study and antimicrobial and wound healing effects of lectin from Solieria filiformis (Kutzing) P.W.Gabrielson.
Biochimie, 214, 2023
7W1G
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BU of 7w1g by Molmil
Crystal structure of YfiH with C107A mutation in complex with UDP-MurNAc-L-Serine
Descriptor: (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid, (2S)-2-[[(2R)-2-[(2R,3R,4R,5S,6R)-3-acetamido-2-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-6-(hydroxymethyl)-5-oxidanyl-oxan-4-yl]oxypropanoyl]amino]-3-oxidanyl-propanoic acid, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Lee, S.H, Hsieh, K.Y, Lee, M.S, Chang, C.I.
Deposit date:2021-11-19
Release date:2021-12-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural Basis for the Peptidoglycan-Editing Activity of YfiH.
Mbio, 13, 2021
7WSV
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BU of 7wsv by Molmil
Cryo-EM structure of the N-terminal deletion mutant of human pannexin-1 in a nanodisc
Descriptor: Pannexin-1
Authors:Kuzuya, M, Hirano, H, Hayashida, K, Watanabe, M, Kobayashi, K, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2022-02-01
Release date:2022-02-16
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Sci.Signal., 15, 2022
4NG4
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BU of 4ng4 by Molmil
Structure of phosphoglycerate kinase (CBU_1782) from Coxiella burnetii
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Phosphoglycerate kinase
Authors:Franklin, M.C, Cheung, J, Rudolph, M, Cassidy, M, Gary, E, Burshteyn, F, Love, J.
Deposit date:2013-11-01
Release date:2015-06-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Structural genomics for drug design against the pathogen Coxiella burnetii.
Proteins, 83, 2015
4NZW
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BU of 4nzw by Molmil
Crystal Structure of STK25-MO25 Complex
Descriptor: 5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE, Calcium-binding protein 39, Serine/threonine-protein kinase 25
Authors:Feng, M, Hao, Q, Zhou, Z.C.
Deposit date:2013-12-13
Release date:2014-12-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.583 Å)
Cite:Structural insights into regulatory mechanisms of MO25-mediated kinase activation.
J.Struct.Biol., 186, 2014
7Z6R
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BU of 7z6r by Molmil
Psychrobacter arcticus ATPPRT (HisGZ) R56A mutant bound to ATP and PRPP
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, ADENOSINE-5'-TRIPHOSPHATE, ATP phosphoribosyltransferase, ...
Authors:Alphey, M.S, Fisher, G, da Silva, R.G.
Deposit date:2022-03-14
Release date:2022-03-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Allosteric rescue of catalytically impaired ATP phosphoribosyltransferase variants links protein dynamics to active-site electrostatic preorganisation.
Nat Commun, 13, 2022
7Z8U
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BU of 7z8u by Molmil
Catalytic subunit HisG R56A mutant from Psychrobacter arcticus ATPPRT (HisGZ) in complex with ATP and PRPP
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, ADENOSINE-5'-TRIPHOSPHATE, ATP phosphoribosyltransferase, ...
Authors:Alphey, M.S, Fisher, G, da Silva, R.G.
Deposit date:2022-03-18
Release date:2022-03-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Allosteric rescue of catalytically impaired ATP phosphoribosyltransferase variants links protein dynamics to active-site electrostatic preorganisation.
Nat Commun, 13, 2022
7Z9F
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BU of 7z9f by Molmil
Human anionic trypsin after autoproteolysis at Arg122
Descriptor: CALCIUM ION, Trypsin-2
Authors:Nagel, F, Palm, G.J, Delcea, M, Lammers, M.
Deposit date:2022-03-21
Release date:2022-06-29
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of the Pancreatitis-Associated Autoproteolytic Failsafe Mechanism in Human Anionic Trypsin.
J Inflamm Res, 15, 2022
4R50
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BU of 4r50 by Molmil
Crystal Structure of CNG mimicking NaK-ETPP mutant cocrystallized with Li+
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCINE, Potassium channel protein
Authors:De March, M, Napolitano, L.M.R, Onesti, S.
Deposit date:2014-08-20
Release date:2015-07-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channels.
Proc.Natl.Acad.Sci.USA, 112, 2015
3POR
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BU of 3por by Molmil
PORIN CONFORMATION IN THE ABSENCE OF CALCIUM; REFINED STRUCTURE AT 2.5 ANGSTROMS RESOLUTION
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PORIN
Authors:Weiss, M.S, Schulz, G.E.
Deposit date:1992-11-09
Release date:1993-07-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Porin conformation in the absence of calcium. Refined structure at 2.5 A resolution.
J.Mol.Biol., 231, 1993
4QQK
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BU of 4qqk by Molmil
Human HMT1 hnRNP methyltransferase-like protein 6 (S. cerevisiae) with GMS
Descriptor: (5S)-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}-N~6~-carbamimidoyl-L-lysine, GLYCEROL, Protein arginine N-methyltransferase 6, ...
Authors:Dong, A, Zeng, H, He, H, Wernimont, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Min, J, Luo, M, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2014-06-27
Release date:2014-07-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural basis of arginine asymmetrical dimethylation by PRMT6.
Biochem. J., 473, 2016
4RBY
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BU of 4rby by Molmil
First X-ray structure of RNA containing guanosine phosphorodithioate
Descriptor: 5'-R(*CP*GP*CP*(2SG)P*AP*AP*UP*UP*AP*GP*CP*G)-3', STRONTIUM ION
Authors:Pallan, P.S, Egli, M.
Deposit date:2014-09-13
Release date:2015-09-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Crystal Structure, Stability and siRNA Activity of Phosphorodithioate-Modified RNAs
To be Published
4RC0
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BU of 4rc0 by Molmil
X-ray structure of RNA containing guanosine phosphorodithioate
Descriptor: 5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*(A2M)P*(2SG)P*CP*G)-3'
Authors:Pallan, P.S, Egli, M.
Deposit date:2014-09-13
Release date:2015-09-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Crystal Structure, Stability and siRNA Activity of Phosphorodithioate-Modified RNAs
To be Published
3EE6
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BU of 3ee6 by Molmil
Crystal Structure Analysis of Tripeptidyl peptidase -I
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Pal, A, Kraetzner, R, Grapp, M, Gruene, T, Schreiber, K, Granborg, M, Urlaub, H, Asif, A.R, Becker, S, Gartner, J, Sheldrick, G.M, Steinfeld, R.
Deposit date:2008-09-04
Release date:2008-11-25
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of tripeptidyl-peptidase I provides insight into the molecular basis of late infantile neuronal ceroid lipofuscinosis
J.Biol.Chem., 284, 2009
3EQN
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BU of 3eqn by Molmil
Crystal structure of beta-1,3-glucanase from Phanerochaete chrysosporium (Lam55A)
Descriptor: ACETATE ION, GLYCEROL, Glucan 1,3-beta-glucosidase, ...
Authors:Ishida, T, Fushinobu, S, Kawai, R, Kitaoka, M, Igarashi, K, Samejima, M.
Deposit date:2008-10-01
Release date:2009-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of glycoside hydrolase family 55 beta -1,3-glucanase from the basidiomycete Phanerochaete chrysosporium
J.Biol.Chem., 284, 2009
3EQO
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BU of 3eqo by Molmil
Crystal structure of beta-1,3-glucanase from Phanerochaete chrysosporium (Lam55A) gluconolactone complex
Descriptor: D-glucono-1,5-lactone, Glucan 1,3-beta-glucosidase, ZINC ION, ...
Authors:Ishida, T, Fushinobu, S, Kawai, R, Kitaoka, M, Igarashi, K, Samejima, M.
Deposit date:2008-10-01
Release date:2009-02-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of glycoside hydrolase family 55 beta -1,3-glucanase from the basidiomycete Phanerochaete chrysosporium
J.Biol.Chem., 284, 2009
4QVL
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BU of 4qvl by Molmil
yCP in complex with bortezomib
Descriptor: CHLORIDE ION, MAGNESIUM ION, N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE, ...
Authors:Huber, E.M, Heinemeyer, W, Groll, M.
Deposit date:2014-07-15
Release date:2015-02-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Bortezomib-Resistant Mutant Proteasomes: Structural and Biochemical Evaluation with Carfilzomib and ONX 0914.
Structure, 23, 2015

224201

數據於2024-08-28公開中

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