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PDB: 52230 results

7UG5
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BU of 7ug5 by Molmil
Second bromodomain of BRD3 liganded with BMS-536924
Descriptor: (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one, 1,2-ETHANEDIOL, Bromodomain-containing protein 3
Authors:Schonbrunn, E, Bikowitz, M.
Deposit date:2022-03-23
Release date:2023-04-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of CBP and EP300 interaction with kinase inhibitors
To Be Published
6HVS
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BU of 6hvs by Molmil
Yeast 20S proteasome with human beta2i (1-53) in complex with 18
Descriptor: (2~{S})-~{N}-[2-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-2-oxidanylidene-ethyl]-2-[[(2~{S})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
6HWB
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BU of 6hwb by Molmil
Yeast 20S proteasome in complex with 44b
Descriptor: (2~{S})-~{N}-[(2~{S},3~{R})-1-(4-cyclohexylcyclohexyl)-4-methyl-3,4-bis(oxidanyl)pentan-2-yl]-3-(4-methoxyphenyl)-2-[[(2~{S})-2-(2-morpholin-4-ium-4-ylethanoylamino)propanoyl]amino]propanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
7UGE
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BU of 7uge by Molmil
Bromodomain of CBP liganded with BMS-536924
Descriptor: (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one, 1,2-ETHANEDIOL, Histone acetyltransferase
Authors:Schonbrunn, E, Bikowitz, M.
Deposit date:2022-03-24
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:Structural basis of CBP and EP300 interaction with kinase inhibitors
To Be Published
7UGI
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BU of 7ugi by Molmil
Bromodomain of EP300 liganded with BMS-536924
Descriptor: (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one, 1,2-ETHANEDIOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ...
Authors:Schonbrunn, E, Bikowitz, M.
Deposit date:2022-03-24
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of CBP and EP300 interaction with kinase inhibitors
To Be Published
6HV3
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BU of 6hv3 by Molmil
Yeast 20S proteasome with human beta2i (1-53)
Descriptor: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-10
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
6HW6
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BU of 6hw6 by Molmil
Yeast 20S proteasome in complex with 20
Descriptor: MAGNESIUM ION, Probable proteasome subunit alpha type-7, Proteasome subunit alpha type-1, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
7UGL
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BU of 7ugl by Molmil
Bromodomain of CBP liganded with BMS-536924 and SGC-CBP30
Descriptor: (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one, 2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole, Histone acetyltransferase
Authors:Schonbrunn, E, Bikowitz, M.
Deposit date:2022-03-24
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of CBP and EP300 interaction with kinase inhibitors
To Be Published
6I09
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BU of 6i09 by Molmil
Crystal structure of RlpA SPOR domain from Pseudomonas aeruginosa in complex with denuded glycan obtained by soaking
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside, Endolytic peptidoglycan transglycosylase RlpA
Authors:Alcorlo, M, Hermoso, J.A.
Deposit date:2018-10-25
Release date:2019-11-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural basis of denuded glycan recognition by SPOR domains in bacterial cell division.
Nat Commun, 10, 2019
7UOI
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BU of 7uoi by Molmil
Crystallographic structure of DapE from Enterococcus faecium
Descriptor: GLYCEROL, ZINC ION, succinyl-diaminopimelate desuccinylase
Authors:Gonzalez-Segura, L, Diaz-Vilchis, A, Terrazas-Lopez, M, Diaz-Sanchez, A.G.
Deposit date:2022-04-12
Release date:2023-04-12
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The three-dimensional structure of DapE from Enterococcus faecium reveals new insights into DapE/ArgE subfamily ligand specificity.
Int.J.Biol.Macromol., 270, 2024
7UMZ
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BU of 7umz by Molmil
Cryo-EM structure of rabbit RyR1 in the presence of high Mg2+ and AMP-PCP in nanodisc
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Nayak, A.R, Samso, M.
Deposit date:2022-04-08
Release date:2023-04-12
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Interplay between Mg2+ and Ca2+ at multiple sites of the ryanodine receptor
Nat Commun, 15, 2024
8WM1
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BU of 8wm1 by Molmil
DHS dehydratase
Descriptor: 3-dehydroshikimate dehydratase (DHS dehydratase), CALCIUM ION
Authors:Wang, M.
Deposit date:2023-10-02
Release date:2024-10-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:DHS dehydratase
To Be Published
7UJJ
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BU of 7ujj by Molmil
Stx2a and DARPin complex
Descriptor: 1,2-ETHANEDIOL, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, DARPin, ...
Authors:Jiang, M, Zhang, J.
Deposit date:2022-03-30
Release date:2023-04-12
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:A Multi-Specific DARPin Potently Neutralizes Shiga Toxin 2 via Simultaneous Modulation of Both Toxin Subunits.
Bioengineering (Basel), 9, 2022
8WJF
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BU of 8wjf by Molmil
Unlocking Immunogenic Potential: Innovating a Peptide/Ferritin Fusion Tag Nano-Delivery Platform from de novo design to Significantly Enhance Antigenicity of the Rabies Virus Glycoprotein Domain III
Descriptor: Peptide 10,Ferritin heavy chain
Authors:Fu, D, Wang, M, Guo, Y.
Deposit date:2023-09-25
Release date:2024-10-02
Method:ELECTRON MICROSCOPY (2.02 Å)
Cite:Unlocking Immunogenic Potential: Innovating a Peptide/Ferritin Fusion Tag Nano-Delivery Platform from de novo design to Significantly Enhance Antigenicity of the Rabies Virus Glycoprotein Domain III
To Be Published
3CES
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BU of 3ces by Molmil
Crystal Structure of E.coli MnmG (GidA), a Highly-Conserved tRNA Modifying Enzyme
Descriptor: tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
Authors:Shi, R, Matte, A, Cygler, M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2008-02-29
Release date:2009-03-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.412 Å)
Cite:Structure-function analysis of Escherichia coli MnmG (GidA), a highly conserved tRNA-modifying enzyme.
J.Bacteriol., 191, 2009
1F0M
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BU of 1f0m by Molmil
MONOMERIC STRUCTURE OF THE HUMAN EPHB2 SAM (STERILE ALPHA MOTIF) DOMAIN
Descriptor: EPHRIN TYPE-B RECEPTOR 2
Authors:Thanos, C.D, Faham, S, Goodwill, K.E, Cascio, D, Phillips, M, Bowie, J.U.
Deposit date:2000-05-16
Release date:2000-07-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Monomeric structure of the human EphB2 sterile alpha motif domain.
J.Biol.Chem., 274, 1999
7UJA
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BU of 7uja by Molmil
Cryo-EM structure of Human respiratory syncytial virus F variant (construct pXCS847A)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AM14 Fab heavy chain, AM14 Fab light chain, ...
Authors:Lees, J.A, Ammirati, M, Han, S.
Deposit date:2022-03-30
Release date:2023-04-19
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Rational design of a highly immunogenic prefusion-stabilized F glycoprotein antigen for a respiratory syncytial virus vaccine.
Sci Transl Med, 15, 2023
4U1R
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BU of 4u1r by Molmil
ATP-bound structure of human platelet phosphofructokinase in an R-state, crystal form II
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent 6-phosphofructokinase, platelet type, ...
Authors:Kloos, M, Straeter, N.
Deposit date:2014-07-16
Release date:2015-06-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of human platelet phosphofructokinase-1 locked in an activated conformation.
Biochem.J., 469, 2015
1F2N
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BU of 1f2n by Molmil
RICE YELLOW MOTTLE VIRUS
Descriptor: CALCIUM ION, CAPSID PROTEIN
Authors:Qu, C, Liljas, L, Opalka, N, Brugidou, C, Yeager, M, Beachy, R.N, Fauquet, C.M, Johnson, J.E, Lin, T.
Deposit date:2000-05-26
Release date:2000-11-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:3D domain swapping modulates the stability of members of an icosahedral virus group.
Structure Fold.Des., 8, 2000
7UOC
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BU of 7uoc by Molmil
Crystal structure of Orobanche minor KAI2d4
Descriptor: CHLORIDE ION, KAI2d4
Authors:Burger, M, Chory, J.
Deposit date:2022-04-12
Release date:2023-04-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Divergent Clade KAI2 Protein in the Root Parasitic Plant Orobanche minor Is a Highly Sensitive Strigolactone Receptor and Is Involved in the Perception of Sesquiterpene Lactones.
Plant Cell.Physiol., 64, 2023
7DY0
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BU of 7dy0 by Molmil
1.93 A cryo-EM structure of streptavidin
Descriptor: Streptavidin
Authors:Hiraizumi, M, Yamashita, K, Nishizawa, T, Kikkawa, M, Nureki, O.
Deposit date:2021-01-20
Release date:2021-02-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (1.93 Å)
Cite:1.93 A cryo-EM structure of streptavidin
To Be Published
8WKW
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BU of 8wkw by Molmil
Structure of MAVS-CARD Filament
Descriptor: Mitochondrial antiviral-signaling protein
Authors:Shi, M, Gao, P.
Deposit date:2023-09-28
Release date:2024-10-16
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structure of MAVS-CARD Filament
To Be Published
8WOK
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BU of 8wok by Molmil
Crystal structure of PL7 family alginate lyase AlyMc
Descriptor: PL7 alignate lyase, SULFATE ION
Authors:Yang, M, Mou, H.J, Kong, Q.
Deposit date:2023-10-07
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of PL7 family alginate lyase AlyMc
To Be Published
6HPO
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BU of 6hpo by Molmil
Crystallographic structure of the catalytic domain of Human Phenylalanine Hydroxylase (hPAH CD) in complex with iron at 1.6 Angstrom
Descriptor: FE (III) ION, Phenylalanine-4-hydroxylase
Authors:Alcorlo Pages, M, Innselset Flydal, M.
Deposit date:2018-09-21
Release date:2019-06-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structure of full-length human phenylalanine hydroxylase in complex with tetrahydrobiopterin.
Proc.Natl.Acad.Sci.USA, 116, 2019
7U2A
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BU of 7u2a by Molmil
Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA (GCU)
Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, RNA (38-MER), Serine--tRNA ligase, ...
Authors:Hirschi, M, Kuhle, B, Doerfel, L, Schimmel, P, Lander, G.
Deposit date:2022-02-23
Release date:2022-09-14
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for shape-selective recognition and aminoacylation of a D-armless human mitochondrial tRNA.
Nat Commun, 13, 2022

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