Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 件

6FWM
DownloadVisualize
BU of 6fwm by Molmil
Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with alpha-Glc-1,3-1,2-anhydro-mannose hydrolyzed by enzyme
分子名称: (1~{S},2~{R},3~{S},4~{R},5~{R})-5-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol, ACETATE ION, Glycosyl hydrolase family 71, ...
著者Sobala, L.F, Speciale, G, Hakki, Z, Fernandes, P.Z, Raich, L, Rojas-Cervellera, V, Bennet, A, Thompson, A.J, Bernardo-Seisdedos, G, Millet, O, Zhu, S, Lu, D, Sollogoub, M, Rovira, C, Jimenez-Barbero, J, Davies, G.J, Williams, S.J.
登録日2018-03-06
公開日2019-09-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献An Epoxide Intermediate in Glycosidase Catalysis.
Acs Cent.Sci., 6, 2020
6FWQ
DownloadVisualize
BU of 6fwq by Molmil
Structure of an E333Q variant of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with alpha-1,3-mannobiose and alpha-1,2-mannobiose
分子名称: Glycosyl hydrolase family 71, SODIUM ION, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose, ...
著者Sobala, L.F, Speciale, G, Hakki, Z, Fernandes, P.Z, Raich, L, Rojas-Cervellera, V, Bennet, A, Thompson, A.J, Bernardo-Seisdedos, G, Millet, O, Zhu, S, Lu, D, Sollogoub, M, Rovira, C, Jimenez-Barbero, J, Davies, G.J, Williams, S.J.
登録日2018-03-07
公開日2019-09-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献An Epoxide Intermediate in Glycosidase Catalysis.
Acs Cent.Sci., 6, 2020
5UU6
DownloadVisualize
BU of 5uu6 by Molmil
The crystal structure of nitroreductase A from Vibrio parahaemolyticus RIMD 2210633
分子名称: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, GLYCEROL, ...
著者Tan, K, Zhou, M, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2017-02-16
公開日2017-03-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The crystal structure of nitroreductase A from Vibrio parahaemolyticus RIMD 2210633
To Be Published
5G3A
DownloadVisualize
BU of 5g3a by Molmil
PsbO subunit of Photosystem II, beta barrel domain at 100K, pH 10
分子名称: CALCIUM ION, PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
著者Bommer, M, Bondar, A.N, Zouni, A, Dobbek, H, Dau, H.
登録日2016-04-25
公開日2016-08-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.224 Å)
主引用文献Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
Biochemistry, 55, 2016
2O9K
DownloadVisualize
BU of 2o9k by Molmil
WDR5 in Complex with Dimethylated H3K4 Peptide
分子名称: H3 HISTONE, WD repeat protein 5
著者Min, J.R, Schuetz, A, Allali-Hassani, A, Martin, F, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
登録日2006-12-13
公開日2006-12-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Basis for Molecular Recognition and Presentation of Histone H3 by Wdr5.
Embo J., 25, 2006
6FY0
DownloadVisualize
BU of 6fy0 by Molmil
Crystal structure of a V2-directed, RV144 vaccine-like antibody from HIV-1 infection, CAP228-16H, bound to a heterologous V2 peptide
分子名称: CAP228-16H Heavy Chain, CAP228-16H Light Chain, CAP45 V2 peptide, ...
著者Wibmer, C.K, Fernandes, M, Vijayakumar, B, Dirr, H.W, Sayed, Y, Moore, P.L, Morris, L.
登録日2018-03-10
公開日2018-11-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献V2-Directed Vaccine-like Antibodies from HIV-1 Infection Identify an Additional K169-Binding Light Chain Motif with Broad ADCC Activity.
Cell Rep, 25, 2018
1CJM
DownloadVisualize
BU of 1cjm by Molmil
HUMAN SULT1A3 WITH SULFATE BOUND
分子名称: PROTEIN (ARYL SULFOTRANSFERASE), SULFATE ION
著者Bidwell, L.M, Mcmanus, M.E, Gaedigk, A, Kakuta, Y, Negishi, M, Pedersen, L, Martin, J.L.
登録日1999-04-18
公開日1999-11-10
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of human catecholamine sulfotransferase.
J.Mol.Biol., 293, 1999
5G3J
DownloadVisualize
BU of 5g3j by Molmil
Discovery of New Selective Glucocorticoid Receptor Agonist Leads
分子名称: 1,2-ETHANEDIOL, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, 5-[[(1S,2R,4R)-4-ethyl-6,7-bis(fluoranyl)-2,5-bis(oxidanyl)-2-(trifluoromethyl)-3,4-dihydro-1H-naphthalen-1-yl]amino]-1H-quinolin-2-one, ...
著者Berger, M, Edman, K, Wissler, L, Neuhaus, R, Rehwinkel, H, Schacke, H, Jaroch, S.
登録日2016-04-27
公開日2017-02-15
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery of New Selective Glucocorticoid Receptor Agonist Leads.
Bioorg.Med.Chem.Lett., 27, 2017
5G3P
DownloadVisualize
BU of 5g3p by Molmil
Bacillus cereus formamidase (BceAmiF) acetylated at the active site.
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
著者Gavira, J.A, Conejero-Muriel, M, Martinez-Rodriguez, S.
登録日2016-04-29
公開日2017-04-12
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献A novel cysteine carbamoyl-switch is responsible for the inhibition of formamidase, a nitrilase superfamily member.
Arch.Biochem.Biophys., 662, 2019
2ODB
DownloadVisualize
BU of 2odb by Molmil
The crystal structure of human cdc42 in complex with the CRIB domain of human p21-activated kinase 6 (PAK6)
分子名称: CHLORIDE ION, Human Cell Division Cycle 42 (CDC42), MAGNESIUM ION, ...
著者Ugochukwu, E, Yang, X, Elkins, J, Soundararajan, M, Pike, A.C.W, Eswaran, J, Burgess, N, Debreczeni, J.E, Sundstrom, M, Arrowsmith, C, Weigelt, J, Edwards, A, Gileadi, O, von Delft, F, Knapp, S, Doyle, D, Structural Genomics Consortium (SGC)
登録日2006-12-22
公開日2007-01-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The crystal structure of human cdc42 in complex with the CRIB domain of human p21-activated kinase 6 (PAK6)
To be Published
5UWY
DownloadVisualize
BU of 5uwy by Molmil
The crystal structure of thioredoxin reductase from Streptococcus pyogenes MGAS5005
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, Thioredoxin reductase
著者Tan, K, Zhou, M, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2017-02-21
公開日2017-03-15
最終更新日2019-12-11
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献The crystal structure of thioredoxin reductase from Streptococcus pyogenes MGAS5005
To Be Published
1CH8
DownloadVisualize
BU of 1ch8 by Molmil
STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH A STRINGENT EFFECTOR, PPG2':3'P
分子名称: GUANOSINE 5'-DIPHOSPHATE 2':3'-CYCLIC MONOPHOSPHATE, HADACIDIN, INOSINIC ACID, ...
著者Hou, Z, Cashel, M, Fromm, H.J, Honzatko, R.B.
登録日1999-03-31
公開日1999-12-29
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Effectors of the stringent response target the active site of Escherichia coli adenylosuccinate synthetase.
J.Biol.Chem., 274, 1999
5G1U
DownloadVisualize
BU of 5g1u by Molmil
Linalool Dehydratase Isomerase in complex with Geraniol
分子名称: Geraniol, LINALOOL DEHYDRATASE/ISOMERASE
著者Chambers, S, Hau, A, Man, H, Omar, M, Turkenburg, J.P, Grogan, G.
登録日2016-03-30
公開日2017-01-11
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献Structural and functional insights into asymmetric enzymatic dehydration of alkenols.
Nat. Chem. Biol., 13, 2017
5UQU
DownloadVisualize
BU of 5uqu by Molmil
Crystal structure of mutant 2-methylcitrate synthase (mcsAG352A) from Aspergillus fumigatus
分子名称: 2-methylcitrate synthase, mitochondrial, COENZYME A, ...
著者Schlachter, C, Chruszcz, M.
登録日2017-02-08
公開日2018-02-14
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Comparative studies of Aspergillus fumigatus 2-methylcitrate synthase and human citrate synthase.
Biol.Chem., 400, 2019
8E2D
DownloadVisualize
BU of 8e2d by Molmil
Cryo-EM structure of BIRC6 (consensus)
分子名称: Baculoviral IAP repeat-containing protein 6
著者Hunkeler, M, Fischer, E.S.
登録日2022-08-15
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.07 Å)
主引用文献Structures of BIRC6-client complexes provide a mechanism of SMAC-mediated release of caspases.
Science, 379, 2023
5J8J
DownloadVisualize
BU of 5j8j by Molmil
A histone deacetylase from Saccharomyces cerevisiae
分子名称: Histone deacetylase HDA1
著者Zhu, Y, Shen, H, Li, X, Teng, M.
登録日2016-04-07
公開日2017-04-19
実験手法X-RAY DIFFRACTION (2.716 Å)
主引用文献Structural and histone binding ability characterization of the ARB2 domain of a histone deacetylase Hda1 from Saccharomyces cerevisiae.
Sci Rep, 6, 2016
2OC8
DownloadVisualize
BU of 2oc8 by Molmil
Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH503034
分子名称: BETA-MERCAPTOETHANOL, Hepatitis C virus, ZINC ION, ...
著者Prongay, A.J, Guo, Z, Yao, N, Fischmann, T, Strickland, C, Myers, J, Weber, P.C, Malcolm, B, Beyer, B.M, Ingram, R, Pichardo, J, Hong, Z, Prosise, W.W, Ramanathan, L, Taremi, S.S, Yarosh-Tomaine, T, Zhang, R, Senior, M, Yang, R.S, Arasappan, A, Bennett, F, Bogen, S.L, Chen, K, Jao, E, Liu, Y.T, Lovey, R.G, Saksena, A.K, Venkatraman, S, Girijavallabhan, V, Njoroge, F.G, Madison, V.
登録日2006-12-20
公開日2007-07-31
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Discovery of the HCV NS3/4A protease inhibitor (1R,5S)-N-[3-amino-1-(cyclobutylmethyl)-2,3-dioxopropyl]-3- [2(S)-[[[(1,1-dimethylethyl)amino]carbonyl]amino]-3,3-dimethyl-1-oxobutyl]- 6,6-dimethyl-3-azabicyclo[3.1.0]hexan-2(S)-carboxamide (Sch 503034) II. Key steps in structure-based optimization.
J.Med.Chem., 50, 2007
8E2J
DownloadVisualize
BU of 8e2j by Molmil
Cryo-EM structure of BIRC6/Smac (from local refinement 1)
分子名称: Baculoviral IAP repeat-containing protein 6, Diablo IAP-binding mitochondrial protein
著者Hunkeler, M, Fischer, E.S.
登録日2022-08-15
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.44 Å)
主引用文献Structures of BIRC6-client complexes provide a mechanism of SMAC-mediated release of caspases.
Science, 379, 2023
8DOL
DownloadVisualize
BU of 8dol by Molmil
Mechanism of regulation of the Helicobacter pylori Cagbeta ATPase by CagZ
分子名称: Cag pathogenicity island protein (Cag5), DI(HYDROXYETHYL)ETHER, SULFATE ION
著者Wu, X, Zhao, Y, Yang, W, Sun, L, Ye, X, Jiang, M, Wang, Q, Wang, Q, Zhang, X, Wu, Y.
登録日2022-07-13
公開日2023-02-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Mechanism of regulation of the Helicobacter pylori Cag beta ATPase by CagZ.
Nat Commun, 14, 2023
8E2E
DownloadVisualize
BU of 8e2e by Molmil
Cryo-EM structure of helical arch of BIRC6 (from local refinement 1)
分子名称: Baculoviral IAP repeat-containing protein 6
著者Hunkeler, M, Fischer, E.S.
登録日2022-08-15
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (1.98 Å)
主引用文献Structures of BIRC6-client complexes provide a mechanism of SMAC-mediated release of caspases.
Science, 379, 2023
8E2G
DownloadVisualize
BU of 8e2g by Molmil
Cryo-EM structure of N-terminal arm (aa68-966) of BIRC6 (from local refinement 3)
分子名称: Baculoviral IAP repeat-containing protein 6
著者Hunkeler, M, Fischer, E.S.
登録日2022-08-15
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献Structures of BIRC6-client complexes provide a mechanism of SMAC-mediated release of caspases.
Science, 379, 2023
1CL3
DownloadVisualize
BU of 1cl3 by Molmil
MOLECULAR INSIGHTS INTO PEBP2/CBF-SMMHC ASSOCIATED ACUTE LEUKEMIA REVEALED FROM THE THREE-DIMENSIONAL STRUCTURE OF PEBP2/CBF BETA
分子名称: POLYOMAVIRUS ENHANCER BINDING PROTEIN 2
著者Goger, M, Gupta, V, Kim, W.Y, Shigesada, K, Ito, Y, Werner, M.H.
登録日1999-05-04
公開日2000-01-01
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Molecular insights into PEBP2/CBF beta-SMMHC associated acute leukemia revealed from the structure of PEBP2/CBF beta
Nat.Struct.Biol., 6, 1999
5HVC
DownloadVisualize
BU of 5hvc by Molmil
Solution structure of the apo state of the acyl carrier protein from the MLSA2 subunit of the mycolactone polyketide synthase
分子名称: Type I modular polyketide synthase
著者Vance, S, Tkachenko, O, Thomas, B, Bassuni, M, Hong, H, Nietlispach, D, Broadhurst, R.W.
登録日2016-01-28
公開日2016-03-09
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Sticky swinging arm dynamics: studies of an acyl carrier protein domain from the mycolactone polyketide synthase.
Biochem.J., 473, 2016
5JA0
DownloadVisualize
BU of 5ja0 by Molmil
Crystal structure of human FPPS with allosterically bound FPP
分子名称: FARNESYL DIPHOSPHATE, Farnesyl pyrophosphate synthase, PHOSPHATE ION
著者Park, J, Zielinski, M, Tsantrizos, Y.S, Berghuis, A.M.
登録日2016-04-11
公開日2017-01-25
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Human farnesyl pyrophosphate synthase is allosterically inhibited by its own product.
Nat Commun, 8, 2017
8E2I
DownloadVisualize
BU of 8e2i by Molmil
Cryo-EM structure of BIRC6/Smac
分子名称: Baculoviral IAP repeat-containing protein 6, Diablo IAP-binding mitochondrial protein
著者Hunkeler, M, Fischer, E.S.
登録日2022-08-15
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Structures of BIRC6-client complexes provide a mechanism of SMAC-mediated release of caspases.
Science, 379, 2023

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon