Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 results

5NRY
DownloadVisualize
BU of 5nry by Molmil
Cys-Gly dipeptidase GliJ in complex with Fe3+
Descriptor: CHLORIDE ION, Dipeptidase gliJ, FE (III) ION
Authors:Groll, M, Huber, E.M.
Deposit date:2017-04-25
Release date:2017-05-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Gliotoxin Biosynthesis: Structure, Mechanism, and Metal Promiscuity of Carboxypeptidase GliJ.
ACS Chem. Biol., 12, 2017
5TF1
DownloadVisualize
BU of 5tf1 by Molmil
Structure of chimeric 02-CC Fab, a VRC01-like germline antibody
Descriptor: 02-CC Fab Heavy chain, O2-CC Fab Light Chain
Authors:Pancera, M.
Deposit date:2016-09-23
Release date:2016-11-16
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (1.858 Å)
Cite:Differences in Allelic Frequency and CDRH3 Region Limit the Engagement of HIV Env Immunogens by Putative VRC01 Neutralizing Antibody Precursors.
Cell Rep, 17, 2016
3OZT
DownloadVisualize
BU of 3ozt by Molmil
Rat catechol O-methyltransferase in complex with a catechol-type, 4-oxo-pyridinyl-containing inhibitor - humanized form
Descriptor: Catechol O-methyltransferase, MAGNESIUM ION, N-[(E)-3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-(4-oxopyridin-1-yl)oxolan-2-yl]prop-2-enyl]-2,3-dihydroxy-5-nitro-benzamide
Authors:Ehler, A, Schlatter, D, Stihle, M, Benz, J, Rudolph, M.G.
Deposit date:2010-09-27
Release date:2011-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Molecular Recognition at the Active Site of Catechol-O-methyltransferase (COMT): Adenine Replacements in Bisubstrate Inhibitors
Chemistry, 17, 2011
5TFZ
DownloadVisualize
BU of 5tfz by Molmil
Crystal structure of the dimethylsulfoniopropionate (DMSP) lyase DddK complexed with nickel and diacrylate
Descriptor: 3-(acryloyloxy)propanoic acid, DI(HYDROXYETHYL)ETHER, NICKEL (II) ION, ...
Authors:Schnicker, N.J, Dey, M.
Deposit date:2016-09-27
Release date:2017-06-14
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Biochemical Insights into Dimethylsulfoniopropionate Cleavage by Cofactor-Bound DddK from the Prolific Marine Bacterium Pelagibacter.
Biochemistry, 56, 2017
5J60
DownloadVisualize
BU of 5j60 by Molmil
Structure of a thioredoxin reductase from Gloeobacter violaceus
Descriptor: CALCIUM ION, FLAVIN-ADENINE DINUCLEOTIDE, TETRAETHYLENE GLYCOL, ...
Authors:Buey, R.M, de Pereda, J.M, Balsera, M.
Deposit date:2016-04-04
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A New Member of the Thioredoxin Reductase Family from Early Oxygenic Photosynthetic Organisms.
Mol Plant, 10, 2017
5AQD
DownloadVisualize
BU of 5aqd by Molmil
Crystal structure of Phormidium Phycoerythrin at pH 8.5
Descriptor: GLYCEROL, PHYCOERYTHRIN ALPHA SUBUNIT, PHYCOERYTHRIN BETA SUBUNIT, ...
Authors:Kumar, V, Sharma, M, Sonani, R.R, Gupta, G.D, Madamwar, D.
Deposit date:2015-09-22
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.121 Å)
Cite:Crystal Structure Analysis of C-Phycoerythrin from Marine Cyanobacterium Phormidium Sp. A09Dm.
Photosynth.Res., 129, 2016
3BKC
DownloadVisualize
BU of 3bkc by Molmil
Crystal structure of anti-amyloid beta FAB WO2 (P21, FormB)
Descriptor: SODIUM ION, WO2 IgG2a Fab fragment Heavy Chain, WO2 IgG2a Fab fragment Light Chain Kappa
Authors:Miles, L.A, Wun, K.S, Crespi, G.A, Fodero-Tavoletti, M, Galatis, D, Bageley, C.J, Beyreuther, K, Masters, C.L, Cappai, R, McKinstry, W.J, Barnham, K.J, Parker, M.W.
Deposit date:2007-12-06
Release date:2008-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Amyloid-beta-anti-amyloid-beta complex structure reveals an extended conformation in the immunodominant B-cell epitope.
J.Mol.Biol., 377, 2008
5TGZ
DownloadVisualize
BU of 5tgz by Molmil
Crystal Structure of the Human Cannabinoid Receptor CB1
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-[4-[2-(2,4-dichlorophenyl)-4-methyl-5-(piperidin-1-ylcarbamoyl)pyrazol-3-yl]phenyl]but-3-ynyl nitrate, Cannabinoid receptor 1,Flavodoxin,Cannabinoid receptor 1, ...
Authors:Hua, T, Vemuri, K, Pu, M, Qu, L, Han, G.W, Wu, Y, Zhao, S, Shui, W, Li, S, Korde, A, Laprairie, R.B, Stahl, E.L, Ho, J.H, Zvonok, N, Zhou, H, Kufareva, I, Wu, B, Zhao, Q, Hanson, M.A, Bohn, L.M, Makriyannis, A, Stevens, R.C, Liu, Z.J.
Deposit date:2016-09-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of the Human Cannabinoid Receptor CB1.
Cell, 167, 2016
1D3Z
DownloadVisualize
BU of 1d3z by Molmil
UBIQUITIN NMR STRUCTURE
Descriptor: PROTEIN (UBIQUITIN)
Authors:Cornilescu, G, Marquardt, J.L, Ottiger, M, Bax, A.
Deposit date:1999-10-01
Release date:1999-10-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase
J.Am.Chem.Soc., 120, 1998
1LQQ
DownloadVisualize
BU of 1lqq by Molmil
ANTI-MAMMAL AND ANTI-INSECT LQQIII SCORPION TOXIN, NMR, 15 STRUCTURES
Descriptor: LQQIII
Authors:Landon, C, Sodano, P, Vovelle, F, Ptak, M.
Deposit date:1997-05-18
Release date:1998-05-20
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:1H-NMR-derived secondary structure and the overall fold of the potent anti-mammal and anti-insect toxin III from the scorpion Leiurus quinquestriatus quinquestriatus.
Eur.J.Biochem., 236, 1996
5JJF
DownloadVisualize
BU of 5jjf by Molmil
Structure of the SRII/HtrII Complex in I212121 space group ("U" shape) - M state
Descriptor: EICOSANE, RETINAL, Sensory rhodopsin II transducer, ...
Authors:Ishchenko, A, Round, E, Borshchevskiy, V, Grudinin, S, Gushchin, I, Klare, J, Remeeva, A, Polovinkin, V, Utrobin, P, Balandin, T, Engelhard, M, Bueldt, G, Gordeliy, V.
Deposit date:2016-04-23
Release date:2017-02-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:New Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex.
Sci Rep, 7, 2017
5THL
DownloadVisualize
BU of 5thl by Molmil
Crystal structure of the human tyrosyl-tRNA synthetase mutant G41R
Descriptor: Tyrosine--tRNA ligase, cytoplasmic
Authors:Blocquel, D, Sajish, M, Yang, X.L.
Deposit date:2016-09-29
Release date:2017-06-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy.
Nucleic Acids Res., 45, 2017
5JLS
DownloadVisualize
BU of 5jls by Molmil
Crystal Structure of Adhesin competence repressor (AdcR) from Streptococcus pyogenes (C-terminally His tagged)
Descriptor: Adhesin competence repressor, ZINC ION
Authors:Do, H, Kumaraswami, M.
Deposit date:2016-04-27
Release date:2017-05-03
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Adhesin competence repressor (AdcR) from Streptococcus pyogenes
To Be Published
5DKJ
DownloadVisualize
BU of 5dkj by Molmil
Yeast 20S proteasome in complex with octreotide-PI
Descriptor: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
Authors:Beck, P, Cui, H, Groll, M.
Deposit date:2015-09-03
Release date:2015-10-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Targeted Delivery of Proteasome Inhibitors to Somatostatin-Receptor-Expressing Cancer Cells by Octreotide Conjugation.
Chemmedchem, 10, 2015
1AG2
DownloadVisualize
BU of 1ag2 by Molmil
PRION PROTEIN DOMAIN PRP(121-231) FROM MOUSE, NMR, 2 MINIMIZED AVERAGE STRUCTURE
Descriptor: MAJOR PRION PROTEIN
Authors:Billeter, M, Riek, R, Wider, G, Wuthrich, K, Hornemann, S, Glockshuber, R.
Deposit date:1997-03-31
Release date:1997-10-08
Last modified:2024-06-05
Method:SOLUTION NMR
Cite:NMR structure of the mouse prion protein domain PrP(121-231).
Nature, 382, 1996
5TNZ
DownloadVisualize
BU of 5tnz by Molmil
HtrA2 S142D mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SODIUM ION, Serine protease HTRA2, ...
Authors:Macedo-Ribeiro, S, Merski, M, Pereira, P.J.B.
Deposit date:2016-10-15
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular motion regulates the activity of the Mitochondrial Serine Protease HtrA2.
Cell Death Dis, 8, 2017
5DNV
DownloadVisualize
BU of 5dnv by Molmil
Crystal structure of KAI2-like protein from Striga (apo state 2)
Descriptor: BENZOIC ACID, FORMIC ACID, ShKAI2iB
Authors:Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M.
Deposit date:2015-09-10
Release date:2016-08-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis of unique ligand specificity of KAI2-like protein from parasitic weed Striga hermonthica
Sci Rep, 6, 2016
8E51
DownloadVisualize
BU of 8e51 by Molmil
Crystal Structure of Iridescent Shark Catfish Cadherin-23 EC1-2 and Protocadherin-15 EC1-2
Descriptor: CALCIUM ION, Cadherin-23, POTASSIUM ION, ...
Authors:Scheib, E, Nisler, C.R, Sotomayor, M.
Deposit date:2022-08-19
Release date:2023-03-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.594 Å)
Cite:Interpreting the Evolutionary Echoes of a Protein Complex Essential for Inner-Ear Mechanosensation.
Mol.Biol.Evol., 40, 2023
5DQI
DownloadVisualize
BU of 5dqi by Molmil
Crystal Structure of Human DNA Polymerase Eta Extending an O4-Ethylthymidine : dA Pair By Inserting dCTP Opposite dG
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*AP*C)-3'), ...
Authors:Patra, A, OFlaherty, D.K, Egli, M.
Deposit date:2015-09-14
Release date:2016-08-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Lesion Orientation ofO4-Alkylthymidine Influences Replication by Human DNA Polymeraseeta.
Chem Sci, 7, 2016
6H4A
DownloadVisualize
BU of 6h4a by Molmil
Human MALT1(329-728) in complex with MLT-748
Descriptor: 1-[2-chloranyl-7-[(1~{R},2~{R})-1,2-dimethoxypropyl]pyrazolo[1,5-a]pyrimidin-6-yl]-3-[5-chloranyl-6-(1,2,3-triazol-2-yl)pyridin-3-yl]urea, Mucosa-associated lymphoid tissue lymphoma translocation protein 1
Authors:Renatus, M, Renatus, M.
Deposit date:2018-07-20
Release date:2019-02-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:An allosteric MALT1 inhibitor is a molecular corrector rescuing function in an immunodeficient patient.
Nat. Chem. Biol., 15, 2019
5KHU
DownloadVisualize
BU of 5khu by Molmil
Model of human Anaphase-promoting complex/Cyclosome (APC15 deletion mutant), in complex with the Mitotic checkpoint complex (APC/C-CDC20-MCC) based on cryo EM data at 4.8 Angstrom resolution
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ...
Authors:Yamaguchi, M, VanderLinden, R, Dube, P, Stark, H, Schulman, B.
Deposit date:2016-06-15
Release date:2016-09-07
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cryo-EM of Mitotic Checkpoint Complex-Bound APC/C Reveals Reciprocal and Conformational Regulation of Ubiquitin Ligation.
Mol.Cell, 63, 2016
4L8Z
DownloadVisualize
BU of 4l8z by Molmil
Crystal structure of Human Hsp90 with RL1
Descriptor: Heat shock protein HSP 90-alpha, [5-(6-bromo[1,2,4]triazolo[4,3-a]pyridin-3-yl)-2,4-dihydroxyphenyl](3,4-dihydroisoquinolin-2(1H)-yl)methanone
Authors:Li, J, Ren, J, Yang, M, Xiong, B, He, J.
Deposit date:2013-06-18
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.703 Å)
Cite:Identification of a new series of potent diphenol HSP90 inhibitors by fragment merging and structure-based optimization
Bioorg.Med.Chem.Lett., 24, 2014
5DRZ
DownloadVisualize
BU of 5drz by Molmil
Crystal structure of anti-HIV-1 antibody F240 Fab in complex with gp41 peptide
Descriptor: Envelope glycoprotein gp160, HIV Antibody F240 Heavy Chain, HIV Antibody F240 Light Chain, ...
Authors:Gohain, N, Tolbert, W.D, Pazgier, M.
Deposit date:2015-09-16
Release date:2016-10-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Molecular basis for epitope recognition by non-neutralizing anti-gp41 antibody F240.
Sci Rep, 6, 2016
3OKV
DownloadVisualize
BU of 3okv by Molmil
Human Carbonic Anhydrase II A65S, N67Q (CA IX mimic) bound with 2-Ethylestrone 3-O-sulfamate
Descriptor: (9beta)-2-ethyl-17-oxoestra-1(10),2,4-trien-3-yl sulfamate, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
Authors:Sippel, K.H, Stander, B.A, Robbins, A.H, Tu, C.K, Agbandje-McKenna, M, Silverman, D.N, Joubert, A.M, McKenna, R.
Deposit date:2010-08-25
Release date:2011-07-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Characterization of Carbonic Anhydrase Isozyme Specific Inhibition by Sulfamated 2-Ethylestra Compounds
LETT.DRUG DES.DISCOVERY, 8, 2011
2NV4
DownloadVisualize
BU of 2nv4 by Molmil
Crystal structure of UPF0066 protein AF0241 in complex with S-adenosylmethionine. Northeast Structural Genomics Consortium target GR27
Descriptor: ACETATE ION, S-ADENOSYLMETHIONINE, UPF0066 protein AF_0241
Authors:Kuzin, A.P, Abashidze, M, Seetharaman, J, Vorobiev, S.M, Fang, Y, Cunningham, K, Ma, L.C, Xiao, R, Liu, J, Baran, M, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-11-10
Release date:2006-11-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Functional insights from structural genomics.
J.Struct.Funct.Genom., 8, 2007

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon