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PDB: 25 results

8GHZ
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BU of 8ghz by Molmil
Cryo-EM structure of fish immunogloblin M-Fc
Descriptor: Teleost immunoglobulin M protein, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Lyu, M, Stadtmueller, B.M, Malyutin, A.G.
Deposit date:2023-03-13
Release date:2023-11-08
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:The structure of the teleost Immunoglobulin M core provides insights on polymeric antibody evolution, assembly, and function.
Nat Commun, 14, 2023
6VKT
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BU of 6vkt by Molmil
Cryo-electron microscopy structures of a gonococcal multidrug efflux pump illuminate a mechanism of erythromycin drug recognition
Descriptor: ERYTHROMYCIN A, Efflux pump membrane transporter, PHOSPHATIDYLETHANOLAMINE
Authors:Lyu, M, Moseng, M.A.
Deposit date:2020-01-22
Release date:2020-07-01
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:Cryo-EM Structures of a Gonococcal Multidrug Efflux Pump Illuminate a Mechanism of Drug Recognition and Resistance.
Mbio, 11, 2020
6WU0
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BU of 6wu0 by Molmil
CryoEM structure of Burkholderia pseudomallei hopanoid biosynthesis-associated RND transporter HpnN
Descriptor: Hopanoid biosynthesis associated RND transporter like protein HpnN
Authors:Lyu, M, Yu, E.W.
Deposit date:2020-05-04
Release date:2021-02-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
Nat.Methods, 18, 2021
6WU6
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BU of 6wu6 by Molmil
succinate-coenzyme Q reductase
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Lyu, M, Su, C.-C, Morgan, C.E, Yu, E.W.
Deposit date:2020-05-04
Release date:2021-02-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
Nat.Methods, 18, 2021
8DEW
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BU of 8dew by Molmil
Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with LL-37 complex
Descriptor: Antibacterial peptide LL-37, Efflux pump membrane transporter, PHOSPHATIDYLETHANOLAMINE
Authors:Lyu, M, Yu, E.W.
Deposit date:2022-06-21
Release date:2022-09-14
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Structural Basis of Peptide-Based Antimicrobial Inhibition of a Resistance-Nodulation-Cell Division Multidrug Efflux Pump.
Microbiol Spectr, 10, 2022
8DEV
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BU of 8dev by Molmil
Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with colistin complex
Descriptor: Colistin, Efflux pump membrane transporter, PHOSPHATIDYLETHANOLAMINE
Authors:Lyu, M, Yu, E.W.
Deposit date:2022-06-21
Release date:2022-09-14
Last modified:2022-11-09
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structural Basis of Peptide-Based Antimicrobial Inhibition of a Resistance-Nodulation-Cell Division Multidrug Efflux Pump.
Microbiol Spectr, 10, 2022
8DEU
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BU of 8deu by Molmil
Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with CASP peptide complex
Descriptor: CASP peptide, Efflux pump membrane transporter, PHOSPHATIDYLETHANOLAMINE
Authors:Lyu, M, Yu, E.W.
Deposit date:2022-06-21
Release date:2022-09-14
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Structural Basis of Peptide-Based Antimicrobial Inhibition of a Resistance-Nodulation-Cell Division Multidrug Efflux Pump.
Microbiol Spectr, 10, 2022
8D45
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BU of 8d45 by Molmil
Cryo-EM structure of human Kidney Betaine-Homocysteine Methyltransferase
Descriptor: Betaine--homocysteine S-methyltransferase 1
Authors:Lyu, M, Yu, E.W.
Deposit date:2022-06-01
Release date:2022-11-16
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Cryo-EM structure of human Kidney Betaine-Homocysteine Methyltransferase
To Be Published
8D43
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BU of 8d43 by Molmil
Cryo-EM structure of human Kidney Glucosidase II
Descriptor: CALCIUM ION, Glucosidase 2 subunit beta, Neutral alpha-glucosidase AB, ...
Authors:Lyu, M, Yu, E.W.
Deposit date:2022-06-01
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Cryo-EM structure of human Kidney Glucosidase II
To Be Published
8D44
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BU of 8d44 by Molmil
Cryo-electron microscopy structure of human kidney Fructose-bisphosphate aldolase B
Descriptor: Fructose-bisphosphate aldolase B
Authors:Lyu, M, Yu, E.W.
Deposit date:2022-06-01
Release date:2022-11-16
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-electron microscopy structure of human kidney Fructose-bisphosphate aldolase B
To Be Published
8D46
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BU of 8d46 by Molmil
Cryo-electron microscopy structure of human kidney Aldehyde Dehydrogenase 1A1
Descriptor: Retinal dehydrogenase 1
Authors:Lyu, M, Yu, E.W.
Deposit date:2022-06-01
Release date:2022-11-16
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Cryo-electron microscopy structure of human kidney Aldehyde Dehydrogenase 1A1
To Be Published
7JZ3
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BU of 7jz3 by Molmil
Osmoporin OmpC from E.coli K12
Descriptor: Outer membrane protein C
Authors:Lyu, M, Su, C, Morgan, C.E, Bolla, J.R, Robinson, C.V, Yu, E.W.
Deposit date:2020-09-01
Release date:2021-01-20
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
Nat.Methods, 18, 2021
7JZ2
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BU of 7jz2 by Molmil
Succinate: quinone oxidoreductase SQR from E.coli K12
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
Authors:Lyu, M, Su, C.-C, Morgan, C.E, Bolla, J.R, Robinson, C.V, Yu, E.W.
Deposit date:2020-09-01
Release date:2021-01-20
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
Nat.Methods, 18, 2021
6MZQ
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BU of 6mzq by Molmil
TAS-120 in reversible binding mode with FGFR1
Descriptor: 1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]prop-2-en-1-one, Fibroblast growth factor receptor 1
Authors:Kalyukina, M, Squire, C.J.
Deposit date:2018-11-05
Release date:2019-01-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:TAS-120 Cancer Target Binding: Defining Reactivity and Revealing the First Fibroblast Growth Factor Receptor 1 (FGFR1) Irreversible Structure.
ChemMedChem, 14, 2019
6MZW
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BU of 6mzw by Molmil
TAS-120 covalent complex with FGFR1
Descriptor: 1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]prop-2-en-1-one, Fibroblast growth factor receptor 1, SULFATE ION
Authors:Kalyukina, M, Squire, C.J.
Deposit date:2018-11-05
Release date:2019-01-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:TAS-120 Cancer Target Binding: Defining Reactivity and Revealing the First Fibroblast Growth Factor Receptor 1 (FGFR1) Irreversible Structure.
ChemMedChem, 14, 2019
6C1O
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BU of 6c1o by Molmil
FGFR1 kinase domain complexed with FIIN-1
Descriptor: Fibroblast growth factor receptor 1, N-(3-{[3-(2,6-dichloro-3,5-dimethoxyphenyl)-7-{[4-(diethylamino)butyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)prop-2-enamide, SULFATE ION
Authors:Kalyukina, M, Yosaatmadja, Y, Smaill, J.B, Squire, C.J.
Deposit date:2018-01-05
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:A new class of FGFR1 inhibitors
To Be Published
6NZS
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BU of 6nzs by Molmil
Dextranase AoDex KQ11
Descriptor: Dextranase
Authors:Ren, W, Yan, W, Gu, L, Feng, Y, Dong, D, Wang, S, Wang, C, Lyu, M.
Deposit date:2019-02-14
Release date:2019-02-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus
To Be Published
7MXY
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BU of 7mxy by Molmil
Cryo-EM structure of PfFNT-inhibitor complex
Descriptor: (Z)-4,4,5,5,5-pentakis(fluoranyl)-1-(4-methoxy-2-oxidanyl-phenyl)-3-oxidanyl-pent-2-en-1-one, Formate-nitrite transporter
Authors:Yu, E.W, Su, C, Lyu, M.
Deposit date:2021-05-19
Release date:2021-12-08
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.18 Å)
Cite:Structural basis of transport and inhibition of the Plasmodium falciparum transporter PfFNT
EMBO Rep, 22, 2021
8EMR
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BU of 8emr by Molmil
Cryo-EM structure of human liver glucosidase II
Descriptor: CALCIUM ION, Glucosidase 2 subunit beta, Neutral alpha-glucosidase AB, ...
Authors:Su, C, Lyu, M, Zhang, Z, Yu, E.W.
Deposit date:2022-09-28
Release date:2023-05-10
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:High-resolution structural-omics of human liver enzymes.
Cell Rep, 42, 2023
8EMS
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BU of 8ems by Molmil
Cryo-EM structure of human liver glycogen phosphorylase
Descriptor: Glycogen phosphorylase, liver form, PYRIDOXAL-5'-PHOSPHATE
Authors:Su, C, Lyu, M, Zhang, Z, Yu, E.W.
Deposit date:2022-09-28
Release date:2023-05-10
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:High-resolution structural-omics of human liver enzymes.
Cell Rep, 42, 2023
8EMT
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BU of 8emt by Molmil
Cryo-EM analysis of the human aldehyde oxidase from liver
Descriptor: Aldehyde oxidase, DIOXOTHIOMOLYBDENUM(VI) ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Su, C, Lyu, M, Zhang, Z, Yu, E.W.
Deposit date:2022-09-28
Release date:2023-05-10
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:High-resolution structural-omics of human liver enzymes.
Cell Rep, 42, 2023
6VQQ
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BU of 6vqq by Molmil
CryoEM Structure of the Plasmodium falciparum transporter PfFNT
Descriptor: Formate-nitrite transporter
Authors:Su, C.C, Lyu, M.
Deposit date:2020-02-05
Release date:2021-02-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structural basis of transport and inhibition of the Plasmodium falciparum transporter PfFNT.
Embo Rep., 22, 2021
6VKS
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BU of 6vks by Molmil
Cryo-electron microscopy structures of a gonococcal multidrug efflux pump illuminate a mechanism of drug recognition with ampicillin
Descriptor: (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Efflux pump membrane transporter, PHOSPHATIDYLETHANOLAMINE
Authors:Moseng, M.A, Lyu, M.
Deposit date:2020-01-22
Release date:2020-07-01
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Cryo-EM Structures of a Gonococcal Multidrug Efflux Pump Illuminate a Mechanism of Drug Recognition and Resistance.
Mbio, 11, 2020
6VQR
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BU of 6vqr by Molmil
CryoEM Structure of the PfFNT-inhibitor complex
Descriptor: (2R)-2-hydroxy-7-methoxy-2-(pentafluoroethyl)-2,3-dihydro-4H-1-benzopyran-4-one, Formate-nitrite transporter
Authors:Su, C.C, Lyu, M.
Deposit date:2020-02-05
Release date:2021-02-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:Structural basis of transport and inhibition of the Plasmodium falciparum transporter PfFNT.
Embo Rep., 22, 2021
6WTZ
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BU of 6wtz by Molmil
Cryo-EM structure of E. Coli OmpF
Descriptor: Outer membrane porin F
Authors:Morgan, C.E, Su, C.-C, Lyu, M, Yu, E.W.
Deposit date:2020-05-04
Release date:2021-01-20
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
Nat.Methods, 18, 2021

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