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PDB: 48 results

5LMR
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Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Hussain, T, Llacer, J.L, Wimberly, B.T, Ramakrishnan, V.
Deposit date:2016-08-01
Release date:2016-10-05
Last modified:2019-10-02
Method:ELECTRON MICROSCOPY (4.45 Å)
Cite:Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation.
Cell, 167, 2016
5LMO
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BU of 5lmo by Molmil
Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1B)
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Hussain, T, Llacer, J.L, Wimberly, B.T, Ramakrishnan, V.
Deposit date:2016-08-01
Release date:2016-10-05
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation.
Cell, 167, 2016
5LMV
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BU of 5lmv by Molmil
Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Hussain, T, Llacer, J.L, Wimberly, B.T, Ramakrishnan, V.
Deposit date:2016-08-01
Release date:2016-10-05
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation.
Cell, 167, 2016
5LMP
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BU of 5lmp by Molmil
Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Hussain, T, Llacer, J.L, Wimberly, B.T, Ramakrishnan, V.
Deposit date:2016-08-01
Release date:2016-10-05
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (5.35 Å)
Cite:Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation.
Cell, 167, 2016
8P9Y
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BU of 8p9y by Molmil
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, ...
Authors:Adhav, A, Forcada-Nadal, A, Marco-Marin, C, Lopez-Redondo, M.L, Llacer, J.L.
Deposit date:2023-06-06
Release date:2023-09-27
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:C-2 Thiophenyl Tryptophan Trimers Inhibit Cellular Entry of SARS-CoV-2 through Interaction with the Viral Spike (S) Protein.
J.Med.Chem., 66, 2023
8P99
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SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1,Spike glycoprotein
Authors:Adhav, A, Forcada-Nadal, A, Marco-Marin, C, Lopez-Redondo, M.L, Llacer, J.L.
Deposit date:2023-06-05
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:C-2 Thiophenyl Tryptophan Trimers Inhibit Cellular Entry of SARS-CoV-2 through Interaction with the Viral Spike (S) Protein.
J.Med.Chem., 66, 2023
8S8K
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BU of 8s8k by Molmil
Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein S12, 40S ribosomal protein S21, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
7QDH
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SARS-CoV-2 S protein S:D614G mutant 1-up
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin
Authors:Ginex, T, Marco-Marin, C, Wieczor, M, Mata, C.P, Krieger, J, Lopez-Redondo, M.L, Frances-Gomez, C, Ruiz-Rodriguez, P, Melero, R, Sanchez-Sorzano, C.O, Martinez, M, Gougeard, N, Forcada-Nadal, A, Zamora-Caballero, S, Gozalbo-Rovira, R, Sanz-Frasquet, C, Bravo, J, Rubio, V, Marina, A, Geller, R, Comas, I, Gil, C, Coscolla, M, Orozco, M, LLacer, J.L, Carazo, J.M.
Deposit date:2021-11-27
Release date:2022-05-25
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation.
Plos Pathog., 18, 2022
7QDG
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BU of 7qdg by Molmil
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ginex, T, Marco-Marin, C, Wieczor, M, Mata, C.P, Krieger, J, Lopez-Redondo, M.L, Frances-Gomez, C, Ruiz-Rodriguez, P, Melero, R, Sanchez-Sorzano, C.O, Martinez, M, Gougeard, N, Forcada-Nadal, A, Zamora-Caballero, S, Gozalbo-Rovira, R, Sanz-Frasquet, C, Bravo, J, Rubio, V, Marina, A, Geller, R, Comas, I, Gil, C, Coscolla, M, Orozco, M, LLacer, J.L, Carazo, J.M.
Deposit date:2021-11-27
Release date:2022-05-25
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation.
Plos Pathog., 18, 2022
8S8H
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BU of 8s8h by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8S8D
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BU of 8s8d by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8S8G
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BU of 8s8g by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8RW1
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BU of 8rw1 by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-02-02
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8S8E
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BU of 8s8e by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.85 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8S8F
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BU of 8s8f by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.95 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8S8J
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BU of 8s8j by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8S8I
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BU of 8s8i by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
3J80
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BU of 3j80 by Molmil
CryoEM structure of 40S-eIF1-eIF1A preinitiation complex
Descriptor: 18S rRNA, MAGNESIUM ION, RACK1, ...
Authors:Hussain, T, Llacer, J.L, Fernandez, I.S, Savva, C.G, Ramakrishnan, V.
Deposit date:2014-08-28
Release date:2014-11-05
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Structural changes enable start codon recognition by the eukaryotic translation initiation complex.
Cell(Cambridge,Mass.), 159, 2014
3J81
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BU of 3j81 by Molmil
CryoEM structure of a partial yeast 48S preinitiation complex
Descriptor: 18S rRNA, MAGNESIUM ION, METHIONINE, ...
Authors:Hussain, T, Llacer, J.L, Fernandez, I.S, Savva, C.G, Ramakrishnan, V.
Deposit date:2014-08-29
Release date:2014-11-05
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural changes enable start codon recognition by the eukaryotic translation initiation complex.
Cell(Cambridge,Mass.), 159, 2014
4OZL
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BU of 4ozl by Molmil
GlnK2 from Haloferax mediterranei complexed with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Nitrogen regulatory protein P-II, SULFATE ION
Authors:Palanca, C, Pedro-Roig, L, Llacer, J.L, Camacho, M, Bonete, M.J, Rubio, V.
Deposit date:2014-02-17
Release date:2014-07-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.4942 Å)
Cite:The structure of a PII signaling protein from a halophilic archaeon reveals novel traits and high-salt adaptations.
Febs J., 281, 2014
4OZN
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BU of 4ozn by Molmil
GlnK2 from Haloferax mediterranei complexed with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Nitrogen regulatory protein P-II, SULFATE ION
Authors:Palanca, C, Pedro-Roig, L, Llacer, J.L, Camacho, M, Bonete, M.J, Rubio, V.
Deposit date:2014-02-17
Release date:2014-07-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure of a PII signaling protein from a halophilic archaeon reveals novel traits and high-salt adaptations.
Febs J., 281, 2014
4OZJ
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BU of 4ozj by Molmil
GlnK2 from Haloferax mediterranei complexed with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Nitrogen regulatory protein P-II
Authors:Palanca, C, Pedro-Roig, L, Llacer, J.L, Camacho, M, Bonete, M.J, Rubio, V.
Deposit date:2014-02-17
Release date:2014-07-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The structure of a PII signaling protein from a halophilic archaeon reveals novel traits and high-salt adaptations.
Febs J., 281, 2014
2JER
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BU of 2jer by Molmil
Agmatine deiminase of Enterococcus faecalis catalyzing its reaction.
Descriptor: AGMATINE DEIMINASE
Authors:Tavarez, S, Llacer, J.L, Rubio, V.
Deposit date:2007-01-19
Release date:2007-01-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The Gene Cluster for Agmatine Catabolism of Enterococcus Faecalis: Study of Recombinant Putrescine Transcarbamylase and Agmatine Deiminase and a Snapshot of Agmatine Deiminase Catalyzing its Reaction.
J.Bacteriol., 189, 2007
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PDB entries from 2024-11-06

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