2JER

Agmatine deiminase of Enterococcus faecalis catalyzing its reaction.

Replaces:  2J2T

Summary for 2JER

Related2J2T
DescriptorAGMATINE DEIMINASE (2 entities in total)
Functional Keywordshydrolase, agmatine deiminase, tetramer, agdi, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct, agmatine iminohydrolase
Biological sourceENTEROCOCCUS FAECALIS
Total number of polymer chains8
Total molecular weight351682.41
Authors
Tavarez, S.,Llacer, J.L.,Rubio, V. (deposition date: 2007-01-19, release date: 2007-01-30, Last modification date: 2011-07-13)
Primary citation
Llacer, J.L.,Polo, L.M.,Tavarez, S.,Alarcon, B.,Hilario, R.,Rubio, V.
The Gene Cluster for Agmatine Catabolism of Enterococcus Faecalis: Study of Recombinant Putrescine Transcarbamylase and Agmatine Deiminase and a Snapshot of Agmatine Deiminase Catalyzing its Reaction.
J.Bacteriol., 189:1254-, 2007
PubMed: 17028272 (PDB entries with the same primary citation)
DOI: 10.1128/JB.01216-06
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.65 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliers0.24450.4%2.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2jer
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Molmil generated image of 2jer
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Molmil generated image of 2jer
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More Biological unit images

Molmil generated image of 2jer
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Molmil generated image of 2jer
rotated about x axis by 90°
Molmil generated image of 2jer
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2jer.pdb1.gz [484.65 KB])
Coordinate files for Biological unit (2jer.pdb2.gz [480.78 KB])
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