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PDB: 180 results

1JR7
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CRYSTAL STRUCTURE OF GAB REVEALS OXIDOREDUCTASE FOLD
Descriptor: FE (II) ION, HYPOTHETICAL 37.4 KDA PROTEIN IN ILEY-GABD INTERGENIC REGION
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-08-12
Release date:2001-08-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural genomics: a pipeline for providing structures for the biologist.
Protein Sci., 11, 2002
1KMK
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BU of 1kmk by Molmil
E. coli NifS/CsdB protein at 2.20A with the cysteine perselenide intermediate (residue CSZ).
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SELENOCYSTEINE, SELENOCYSTEINE LYASE
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-12-16
Release date:2001-12-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
1KMJ
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E. coli NifS/CsdB protein at 2.0A with the cysteine persulfide intermediate (residue CSS).
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Selenocysteine lyase
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-12-16
Release date:2001-12-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.
J.Mol.Biol., 315, 2002
1KPA
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PKCI-1-ZINC
Descriptor: HUMAN PROTEIN KINASE C INTERACTING PROTEIN 1 (ZINC PROTEIN)
Authors:Lima, C.D, Klein, M.G, Weinstein, I.B, Hendrickson, W.A.
Deposit date:1996-01-06
Release date:1996-07-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
Proc.Natl.Acad.Sci.USA, 93, 1996
1KPB
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BU of 1kpb by Molmil
PKCI-1-APO
Descriptor: HUMAN PROTEIN KINASE C INTERACTING PROTEIN 1 (ZINC PROTEIN)
Authors:Lima, C.D, Klein, M.G, Weinstein, I.B, Hendrickson, W.A.
Deposit date:1996-01-06
Release date:1996-07-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
Proc.Natl.Acad.Sci.USA, 93, 1996
1KPC
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BU of 1kpc by Molmil
PKCI-1-APO+ZINC
Descriptor: HUMAN PROTEIN KINASE C INTERACTING PROTEIN 1 (ZINC PROTEIN)
Authors:Lima, C.D, Klein, M.G, Weinstein, I.B, Hendrickson, W.A.
Deposit date:1996-01-06
Release date:1996-07-11
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
Proc.Natl.Acad.Sci.USA, 93, 1996
4M52
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BU of 4m52 by Molmil
Structure of Mtb Lpd bound to SL827
Descriptor: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, N~2~-[(2-amino-5-bromopyridin-3-yl)sulfonyl]-N-(4-methoxyphenyl)-N~2~-methylglycinamide
Authors:Lima, C.D.
Deposit date:2013-08-07
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lipoamide channel-binding sulfonamides selectively inhibit mycobacterial lipoamide dehydrogenase.
Biochemistry, 52, 2013
2NN6
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Structure of the human RNA exosome composed of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, and Rrp40
Descriptor: 3'-5' exoribonuclease CSL4 homolog, Exosome complex exonuclease RRP4, Exosome complex exonuclease RRP40, ...
Authors:Lima, C.D.
Deposit date:2006-10-23
Release date:2006-12-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Reconstitution, activities, and structure of the eukaryotic RNA exosome.
Cell(Cambridge,Mass.), 127, 2006
2Q2T
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Structure of Chlorella virus DNA ligase-adenylate bound to a 5' phosphorylated nick
Descriptor: 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3', 5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3', 5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3', ...
Authors:Lima, C.D, Nandakumar, J, Nair, P.A, Smith, P, Shuman, S.
Deposit date:2007-05-29
Release date:2007-07-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for nick recognition by a minimal pluripotent DNA ligase.
Nat.Struct.Mol.Biol., 14, 2007
1D8H
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X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH SULFATE AND MANGANESE IONS.
Descriptor: MANGANESE (II) ION, SULFATE ION, mRNA TRIPHOSPHATASE CET1
Authors:Lima, C.D, Wang, L.K, Shuman, S.
Deposit date:1999-10-24
Release date:1999-11-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of yeast RNA triphosphatase: an essential component of the mRNA capping apparatus.
Cell(Cambridge,Mass.), 99, 1999
1D8I
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X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH A SULFATE ION.
Descriptor: MRNA TRIPHOSPHATASE CET1, SULFATE ION
Authors:Lima, C.D, Wang, L.K, Shuman, S.
Deposit date:1999-10-24
Release date:1999-11-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure and mechanism of yeast RNA triphosphatase: an essential component of the mRNA capping apparatus.
Cell(Cambridge,Mass.), 99, 1999
1FIT
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BU of 1fit by Molmil
FHIT (FRAGILE HISTIDINE TRIAD PROTEIN)
Descriptor: FRAGILE HISTIDINE PROTEIN, SULFATE ION, beta-D-fructofuranose
Authors:Lima, C.D, D'Amico, K.L, Naday, I, Rosenbaum, G, Westbrook, E.M, Hendrickson, W.A.
Deposit date:1997-05-17
Release date:1997-11-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family.
Structure, 5, 1997
4FIT
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BU of 4fit by Molmil
FHIT-APO
Descriptor: FRAGILE HISTIDINE TRIAD PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
5VZJ
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BU of 5vzj by Molmil
STRUCTURE OF A TWELVE COMPONENT MPP6-NUCLEAR RNA EXOSOME COMPLEX BOUND TO RNA
Descriptor: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ...
Authors:Lima, C.D, Wasmuth, E.V.
Deposit date:2017-05-28
Release date:2017-08-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and reconstitution of yeast Mpp6-nuclear exosome complexes reveals that Mpp6 stimulates RNA decay and recruits the Mtr4 helicase.
Elife, 6, 2017
1RI6
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Structure of a putative isomerase from E. coli
Descriptor: putative isomerase ybhE
Authors:Lima, C.D, Kniewel, R, Solorzano, V, Wu, J, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2003-11-16
Release date:2003-11-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a putative 7-bladed propeller isomerase
To be Published
2FIT
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BU of 2fit by Molmil
FHIT (FRAGILE HISTIDINE TRIAD PROTEIN)
Descriptor: FRAGILE HISTIDINE PROTEIN, SULFATE ION, beta-D-fructofuranose
Authors:Lima, C.D, D'Amico, K.L, Naday, I, Rosenbaum, G, Westbrook, E.M, Hendrickson, W.A.
Deposit date:1997-05-17
Release date:1997-11-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family.
Structure, 5, 1997
2HV9
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BU of 2hv9 by Molmil
Encephalitozoon cuniculi mRNA Cap (Guanine-N7) Methyltransferase in complex with sinefungin
Descriptor: SINEFUNGIN, mRNA cap guanine-N7 methyltransferase
Authors:Lima, C.D.
Deposit date:2006-07-27
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Mutational Analysis of Encephalitozoon cuniculi mRNA Cap (Guanine-N7) Methyltransferase, Structure of the Enzyme Bound to Sinefungin, and Evidence That Cap Methyltransferase Is the Target of Sinefungin's Antifungal Activity
J.Biol.Chem., 281, 2006
2A8X
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BU of 2a8x by Molmil
Crystal Structure of Lipoamide Dehydrogenase from Mycobacterium tuberculosis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Rajashankar, K.R, Bryk, R, Kniewel, R, Buglino, J.A, Nathan, C.F, Lima, C.D.
Deposit date:2005-07-10
Release date:2005-08-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure and functional analysis of lipoamide dehydrogenase from Mycobacterium tuberculosis
J.Biol.Chem., 280, 2005
2AP9
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BU of 2ap9 by Molmil
Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551
Descriptor: MAGNESIUM ION, NICKEL (II) ION, acetylglutamate kinase
Authors:Rajashankar, K.R, Kniewel, R, Lee, K, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2005-08-15
Release date:2005-08-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551
To be Published
6OP8
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BU of 6op8 by Molmil
S. pombe Ubc7/U7BR complex
Descriptor: 1,2-ETHANEDIOL, CUE domain-containing protein 4, mitochondrial, ...
Authors:Hann, Z.S, Lima, C.D.
Deposit date:2019-04-24
Release date:2019-08-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.703 Å)
Cite:Crystal structure of the Schizosaccharomyces pombe U7BR E2-binding region in complex with Ubc7.
Acta Crystallogr.,Sect.F, 75, 2019
6O83
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BU of 6o83 by Molmil
S. pombe ubiquitin E1~ubiquitin-AMP tetrahedral intermediate mimic
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine, ...
Authors:Hann, Z.S, Lima, C.D.
Deposit date:2019-03-08
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.153 Å)
Cite:Structural basis for adenylation and thioester bond formation in the ubiquitin E1.
Proc.Natl.Acad.Sci.USA, 116, 2019
5FG1
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Structure of the conserved yeast listerin (Ltn1) selenomethionine-substituted N-terminal domain, TRIGONAL FORM
Descriptor: E3 ubiquitin-protein ligase listerin, POTASSIUM ION
Authors:Doamekpor, S.K, Lima, C.D.
Deposit date:2015-12-19
Release date:2016-07-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure and function of the yeast listerin (Ltn1) conserved N-terminal domain in binding to stalled 60S ribosomal subunits.
Proc.Natl.Acad.Sci.USA, 113, 2016
4XQ0
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Structure of fission yeast RNA polymerase II CTD phosphatase Fcp1-R271A bound to beryllium fluoride
Descriptor: MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase, TETRAETHYLENE GLYCOL
Authors:Ghosh, A, Lima, C.D.
Deposit date:2015-01-18
Release date:2015-03-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Genetic and structural analysis of the essential fission yeast RNA polymerase II CTD phosphatase Fcp1.
Rna, 21, 2015
4XPZ
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Structure of fission yeast RNA polymerase II CTD phosphatase Fcp1-R271A bound to aluminum fluoride
Descriptor: ALUMINUM FLUORIDE, MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase, ...
Authors:Ghosh, A, Lima, C.D.
Deposit date:2015-01-18
Release date:2015-03-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Genetic and structural analysis of the essential fission yeast RNA polymerase II CTD phosphatase Fcp1.
Rna, 21, 2015
5FG0
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Structure of the conserved yeast listerin (Ltn1) N-terminal domain, MONOCLINIC FORM
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase listerin, POTASSIUM ION
Authors:Doamekpor, S.K, Lima, C.D.
Deposit date:2015-12-19
Release date:2016-07-06
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structure and function of the yeast listerin (Ltn1) conserved N-terminal domain in binding to stalled 60S ribosomal subunits.
Proc.Natl.Acad.Sci.USA, 113, 2016

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