Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 311 results

7V8R
DownloadVisualize
BU of 7v8r by Molmil
Crystal structure of cyclohexanone monooxygenase from T. municipale mutant L437T complexed with NADP+ and FAD in space group of C2221
Descriptor: 1,2-ETHANEDIOL, Cyclohexanone Monooxygenase from Thermocrispum municipale, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Li, T, Li, G.Y, Yin, H.
Deposit date:2021-08-23
Release date:2022-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.764 Å)
Cite:Biocatalytic Baeyer-Villiger Reactions: Uncovering the Source of Regioselectivity at Each Evolutionary Stage of a Mutant with Scrutiny of Fleeting Chiral Intermediates.
Acs Catalysis, 12, 2022
3IU0
DownloadVisualize
BU of 3iu0 by Molmil
Structural basis for zymogen activation and substrate binding of transglutaminase from Streptomyces mobaraense
Descriptor: Protein-glutamine gamma-glutamyltransferase
Authors:Li, T.T.
Deposit date:2009-08-28
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for zymogen activation and substrate binding of transglutaminase from Streptomyces mobaraense
To be Published
6IIY
DownloadVisualize
BU of 6iiy by Molmil
Crystal structure of deacetylase triple mutant (Orf2*T) that involving in teicoplanin biosynthetic pathway
Descriptor: COBALT (II) ION, IMIDAZOLE, deacetylase
Authors:Li, T.L, Huang, C.M.
Deposit date:2018-10-08
Release date:2019-10-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Teicoplanin Reprogrammed with the N-Acyl-Glucosamine Pharmacophore at the Penultimate Residue of Aglycone Acquires Broad-Spectrum Antimicrobial Activities Effectively Killing Gram-Positive and -Negative Pathogens.
Acs Infect Dis., 5, 2019
8X01
DownloadVisualize
BU of 8x01 by Molmil
Structure of the Mumps Virus L Protein (state2) Bound by Phosphoprotein Tetramer
Descriptor: Phosphoprotein, RNA-directed RNA polymerase L, ZINC ION
Authors:Li, T.H, Shen, Q.T.
Deposit date:2023-11-02
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structures of the mumps virus polymerase complex via cryo-electron microscopy.
Nat Commun, 15, 2024
7FAH
DownloadVisualize
BU of 7fah by Molmil
Immune complex of head region of CA09 HA and neutralizing antibody 12H5
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:Li, T.T, Xue, W.H, Gu, Y, Li, S.W.
Deposit date:2021-07-06
Release date:2022-07-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.151 Å)
Cite:Identification of a cross-neutralizing antibody that targets the receptor binding site of H1N1 and H5N1 influenza viruses.
Nat Commun, 13, 2022
6A19
DownloadVisualize
BU of 6a19 by Molmil
Mandelate oxidase mutant-Y128F with Benzoylformic acid
Descriptor: 4-hydroxymandelate oxidase, BENZOYL-FORMIC ACID, FLAVIN MONONUCLEOTIDE
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-06
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
6A08
DownloadVisualize
BU of 6a08 by Molmil
The crystal structure of Mandelate oxidase with benzoyl-formic acid
Descriptor: 4-hydroxymandelate oxidase, BENZOYL-FORMIC ACID, FLAVIN MONONUCLEOTIDE, ...
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-05
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.547 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
5ZZR
DownloadVisualize
BU of 5zzr by Molmil
The crystal structure of Mandelate oxidase with (S)-mandelic acid
Descriptor: (S)-MANDELIC ACID, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-04
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
5ZZP
DownloadVisualize
BU of 5zzp by Molmil
The crystal structure of Mandelate oxidase
Descriptor: 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-04
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
6A0V
DownloadVisualize
BU of 6a0v by Molmil
Mandelate oxidase mutant-Y128F with (S)-mandelic acid
Descriptor: (S)-MANDELIC ACID, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-06
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
6A13
DownloadVisualize
BU of 6a13 by Molmil
Mandelate oxidase mutant-Y128F
Descriptor: 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE
Authors:Li, T.L, Lin, K.H.
Deposit date:2018-06-06
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75, 2019
3RQA
DownloadVisualize
BU of 3rqa by Molmil
The Crystal Structure of a Pathogenic Protein from the Xanthomonas campestris Reveals a New Tetrameric PilZ Domain Self-Assembled via a Unusual Helical Bundle
Descriptor: ACETATE ION, Putative uncharacterized protein
Authors:Li, T.-N, Chin, K.-H, Chou, S.-H.
Deposit date:2011-04-28
Release date:2012-03-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A novel tetrameric PilZ domain structure from xanthomonads
Plos One, 6, 2011
6IIX
DownloadVisualize
BU of 6iix by Molmil
The crystal structure of acyltransferase mutant, orf11*-W163A, in complex with octanoyl-CoA
Descriptor: OCTANOYL-COENZYME A, SULFATE ION, acyltransferase
Authors:Li, T.L, Huang, C.M.
Deposit date:2018-10-08
Release date:2019-10-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Teicoplanin Reprogrammed with the N-Acyl-Glucosamine Pharmacophore at the Penultimate Residue of Aglycone Acquires Broad-Spectrum Antimicrobial Activities Effectively Killing Gram-Positive and -Negative Pathogens.
Acs Infect Dis., 5, 2019
6M2T
DownloadVisualize
BU of 6m2t by Molmil
The crystal structure of benzoate coenzyme A ligase double mutant (H333A/I334A) in complex with 2-methyl-thiazole-5 carboxylate-AMP
Descriptor: 2-methyl-1,3-thiazole-5-carboxylic acid, ADENOSINE MONOPHOSPHATE, Benzoate-coenzyme A ligase
Authors:Li, T.L, Adhikari, K.
Deposit date:2020-02-29
Release date:2021-03-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:The crystal structure of benzoate coenzyme A ligase double mutant (H333A/I334A) in complex with 2-methyl-thiazole-5 carboxylate-AMP
To Be Published
6MNE
DownloadVisualize
BU of 6mne by Molmil
CRYSTAL STRUCTURE OF HUMAN 17BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 1 COMPLEXED WITH ESTRONE AND NADP+
Descriptor: (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one, Estradiol 17-beta-dehydrogenase 1, GLYCEROL, ...
Authors:Li, T, Lin, S.X.
Deposit date:2018-10-01
Release date:2019-04-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structures of human 17 beta-hydroxysteroid dehydrogenase type 1 complexed with estrone and NADP+reveal the mechanism of substrate inhibition.
Febs J., 286, 2019
6MNC
DownloadVisualize
BU of 6mnc by Molmil
CRYSTAL STRUCTURE OF HUMAN 17BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 1 COMPLEXED WITH ESTRONE
Descriptor: (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one, DI(HYDROXYETHYL)ETHER, Estradiol 17-beta-dehydrogenase 1
Authors:Li, T, Stephen, P, Zhu, D.W, Lin, S.X.
Deposit date:2018-10-01
Release date:2019-04-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of human 17 beta-hydroxysteroid dehydrogenase type 1 complexed with estrone and NADP+reveal the mechanism of substrate inhibition.
Febs J., 286, 2019
4Q38
DownloadVisualize
BU of 4q38 by Molmil
The crystal structure of acyltransferase in complex with decanoyl-CoA and teicoplanin
Descriptor: 2-amino-6-O-decanoyl-2-deoxy-beta-D-glucopyranose, COENZYME A, Putative uncharacterized protein tcp24, ...
Authors:Li, T.-L, Lyu, S.-Y, Liu, Y.-C, Chang, C.-Y, Huang, C.-J.
Deposit date:2014-04-11
Release date:2014-09-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Multiple complexes of long aliphatic N-acyltransferases lead to synthesis of 2,6-diacylated/2-acyl-substituted glycopeptide antibiotics, effectively killing vancomycin-resistant enterococcus
J.Am.Chem.Soc., 136, 2014
7F5G
DownloadVisualize
BU of 7f5g by Molmil
The crystal structure of RBD-Nanobody complex, DL4 (SA4)
Descriptor: ACETATE ION, GLYCEROL, Nanobody DL4, ...
Authors:Li, T, Lai, Y, Zhou, Y, Tan, J, Li, D.
Deposit date:2021-06-22
Release date:2022-05-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Isolation, characterization, and structure-based engineering of a neutralizing nanobody against SARS-CoV-2.
Int.J.Biol.Macromol., 209, 2022
4Q36
DownloadVisualize
BU of 4q36 by Molmil
The crystal structure of acyltransferase in complex with octanoyl-CoA and teicoplanin
Descriptor: 2-amino-2-deoxy-beta-D-glucopyranose, OCTANOYL-COENZYME A, Putative uncharacterized protein tcp24, ...
Authors:Li, T.-L, Lyu, S.-Y, Liu, Y.-C, Chang, C.-Y, Huang, C.-J.
Deposit date:2014-04-11
Release date:2014-09-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Multiple complexes of long aliphatic N-acyltransferases lead to synthesis of 2,6-diacylated/2-acyl-substituted glycopeptide antibiotics, effectively killing vancomycin-resistant enterococcus
J.Am.Chem.Soc., 136, 2014
7C8V
DownloadVisualize
BU of 7c8v by Molmil
Structure of sybody SR4 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Spike protein S1, ...
Authors:Li, T, Yao, H, Cai, H, Qin, W, Li, D.
Deposit date:2020-06-03
Release date:2020-06-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A synthetic nanobody targeting RBD protects hamsters from SARS-CoV-2 infection.
Nat Commun, 12, 2021
1MTK
DownloadVisualize
BU of 1mtk by Molmil
PHE46(CD4) ORIENTS THE DISTAL HISTIDINE FOR HYDROGEN BONDING TO BOUND LIGANDS IN SPERM WHALE MYOGLOBIN
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Li, T, Phillips Jr, G.N.
Deposit date:1994-12-12
Release date:1995-09-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Phe-46(CD4) orients the distal histidine for hydrogen bonding to bound ligands in sperm whale myoglobin.
Proteins, 22, 1995
7VPG
DownloadVisualize
BU of 7vpg by Molmil
Crystal structure of the C-terminal tail of SARS-CoV-1 Orf6 complex with human nucleoporin pair Rae1-Nup98
Descriptor: Isoform 3 of Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor
Authors:Li, T, Guo, H, Yang, T, Wen, Y, Ji, X.
Deposit date:2021-10-17
Release date:2022-01-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Molecular Mechanism of SARS-CoVs Orf6 Targeting the Rae1-Nup98 Complex to Compete With mRNA Nuclear Export.
Front Mol Biosci, 8, 2021
7VPH
DownloadVisualize
BU of 7vph by Molmil
Crystal structure of the C-terminal tail of SARS-CoV-2 Orf6 complex with human nucleoporin pair Rae1-Nup98
Descriptor: Isoform 3 of Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor
Authors:Li, T, Guo, H, Yang, T, Wen, Y, Ji, X.
Deposit date:2021-10-17
Release date:2022-01-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular Mechanism of SARS-CoVs Orf6 Targeting the Rae1-Nup98 Complex to Compete With mRNA Nuclear Export.
Front Mol Biosci, 8, 2021
6CGC
DownloadVisualize
BU of 6cgc by Molmil
Crystal structure of human 17beta-HSD type 1 in ternary complex with 2-MeO-CC-156 and NADP+
Descriptor: 3-{[(9beta,14beta,16alpha,17alpha)-3,17-dihydroxy-2-methoxyestra-1,3,5(10)-trien-16-yl]methyl}benzamide, Estradiol 17-beta-dehydrogenase 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Li, T, Lin, S.X.
Deposit date:2018-02-19
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Combined Biophysical Chemistry Reveals a New Covalent Inhibitor with a Low-Reactivity Alkyl Halide.
J Phys Chem Lett, 9, 2018
6CGE
DownloadVisualize
BU of 6cge by Molmil
Crystal structure of human 17beta-HSD type 1 in ternary complex with PBRM and NADP+
Descriptor: 3-{[(14beta,16alpha,17alpha)-3-(2-bromoethyl)-17-hydroxyestra-1,3,5(10)-trien-16-yl]methyl}benzamide, Estradiol 17-beta-dehydrogenase 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Li, T, Lin, S.X.
Deposit date:2018-02-20
Release date:2019-01-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Combined Biophysical Chemistry Reveals a New Covalent Inhibitor with a Low-Reactivity Alkyl Halide.
J Phys Chem Lett, 9, 2018

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon