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PDB: 643 results

1FNJ
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BU of 1fnj by Molmil
CRYSTAL STRUCTURE ANALYSIS OF CHORISMATE MUTASE MUTANT C88S/R90K
Descriptor: PROTEIN (CHORISMATE MUTASE)
Authors:Kast, P, Grisostomi, C, Chen, I.A, Li, S, Krengel, U, Xue, Y, Hilvert, D.
Deposit date:2000-08-22
Release date:2000-10-11
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A strategically positioned cation is crucial for efficient catalysis by chorismate mutase.
J.Biol.Chem., 275, 2000
6WQH
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BU of 6wqh by Molmil
Molecular basis for the ATPase-powered substrate translocation by the Lon AAA+ protease
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Ig2 substrate, Lon protease, ...
Authors:Zhang, K, Li, S, Hsiehb, K, Sub, S, Pintilie, G, Chiu, W, Chang, C.
Deposit date:2020-04-28
Release date:2021-06-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular basis for ATPase-powered substrate translocation by the Lon AAA+ protease.
J.Biol.Chem., 297, 2021
8WNF
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BU of 8wnf by Molmil
Crystal structure of H. pylori isoleucyl-tRNA synthetase (HpIleRS) in apo form
Descriptor: ACETATE ION, GLYCEROL, Isoleucine--tRNA ligase, ...
Authors:Guo, Y, Li, S, Zhang, T.
Deposit date:2023-10-05
Release date:2024-02-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for substrate and antibiotic recognition by Helicobacter pylori isoleucyl-tRNA synthetase.
Febs Lett., 598, 2024
5I72
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BU of 5i72 by Molmil
Crystal structure of the oligomeric form of the Lassa virus matrix protein Z
Descriptor: RING finger protein Z, ZINC ION
Authors:Hastie, K, Zandonatti, M, Liu, T, Li, S, Woods Jr, V, Saphire, E.O.
Deposit date:2016-02-16
Release date:2016-03-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of the Oligomeric Form of Lassa Virus Matrix Protein Z.
J.Virol., 90, 2016
4HP5
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BU of 4hp5 by Molmil
The crystal structure of isomaltulose synthase mutant E295A from Erwinia rhapontici NX5 in complex with D-glucose
Descriptor: CALCIUM ION, GLYCEROL, Sucrose isomerase, ...
Authors:Xu, Z, Li, S, Xu, H, Zhou, J.
Deposit date:2012-10-23
Release date:2013-11-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of isomaltulose synthase mutant E295A from Erwinia rhapontici NX5 in complex with D-glucose
to be published
8WZE
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BU of 8wze by Molmil
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 sc9-10 strain: B18537) in complex with humanized nAb 5B11 (localized refinement)
Descriptor: 5B11 Fab Heavy Chain, 5B11 Fab Light Chain, RSV pre-fusion glycoprotein
Authors:Liu, L, Sun, H, Sun, Y, Zheng, Q, Li, S, Zheng, Z, Xia, N.
Deposit date:2023-11-02
Release date:2024-11-13
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 sc9-10 strain: B18537) in complex with humanized nAb 5B11 (localized refinement)
To Be Published
8WZ5
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BU of 8wz5 by Molmil
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 sc9-10 strain: B18537) in complex with humanized nAb 5B11
Descriptor: 5B11 Fab Heavy Chain, 5B11 Fab Light Chain, RSV Fusion glycoprotein
Authors:Liu, L, Sun, H, Sun, Y, Zheng, Q, Li, S, Zheng, Z, Xia, N.
Deposit date:2023-11-01
Release date:2024-11-13
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 sc9-10 strain: B18537) in complex with humanized nAb 5B11
To Be Published
8WZ4
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BU of 8wz4 by Molmil
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nAb 5B11 (localized refinement)
Descriptor: 5B11 Fab Heavy Chain, 5B11 Fab Light Chain, RSV Fusion glycoprotein
Authors:Liu, L, Sun, H, Sun, Y, Zheng, Q, Li, S, Zheng, Z, Xia, N.
Deposit date:2023-11-01
Release date:2024-11-06
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nAb 5B11 (localized refinement)
To Be Published
8WZ3
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BU of 8wz3 by Molmil
Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nAb 5B11
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5B11 Fab Heavy Chain, 5B11 Fab Light Chain, ...
Authors:Liu, L, Sun, H, Sun, Y, Zheng, Q, Li, S, Zheng, Z, Xia, N.
Deposit date:2023-11-01
Release date:2024-11-13
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Cryo-EM structure of prefusion-stabilized RSV F (DS-Cav1 strain: A2) in complex with nAb 5B11
To Be Published
4G8R
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BU of 4g8r by Molmil
Crystal Structure of a novel small molecule inactivator bound to plasminogen activator inhibitor-1
Descriptor: (2S)-3-({[3-(trifluoromethyl)phenoxy]carbonyl}amino)propane-1,2-diyl bis(3,4,5-trihydroxybenzoate), Plasminogen activator inhibitor-1, SULFATE ION
Authors:Stuckey, J.A, Lawrence, D.A, Li, S.-H.
Deposit date:2012-07-23
Release date:2013-12-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Mechanistic characterization and crystal structure of a small molecule inactivator bound to plasminogen activator inhibitor-1.
Proc.Natl.Acad.Sci.USA, 110, 2013
5ZKL
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BU of 5zkl by Molmil
Crystal structure of Streptococcus pneumoniae SP_0782 (residues 7-79) in complex with single-stranded DNA dT12
Descriptor: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), SP_0782
Authors:Lu, G, Li, S, Zhu, J, Yang, Y, Gong, P.
Deposit date:2018-03-24
Release date:2019-03-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.951 Å)
Cite:Structural insight into the length-dependent binding of ssDNA by SP_0782 from Streptococcus pneumoniae, reveals a divergence in the DNA-binding interface of PC4-like proteins.
Nucleic Acids Res., 48, 2020
4PLJ
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BU of 4plj by Molmil
Hepatitis E Virus E2s domain (Genotype IV) in complex with a neutralizing antibody 8G12
Descriptor: 8G12 heavy chain, 8G12 light chain, Capsid protein
Authors:Tang, X.H, Li, S.W, Sivaraman, J.
Deposit date:2014-05-18
Release date:2015-04-15
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the neutralization of hepatitis E virus by a cross-genotype antibody
Cell Res., 25, 2015
4PLK
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BU of 4plk by Molmil
Hepatitis E Virus E2s domain (Genotype I) in complex with a neutralizing antibody 8G12
Descriptor: 8G12 heavy chain, 8G12 light chain, Capsid protein
Authors:Tang, X.H, Li, S.W, Sivaraman, J.
Deposit date:2014-05-18
Release date:2015-04-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural basis for the neutralization of hepatitis E virus by a cross-genotype antibody
Cell Res., 25, 2015
1H53
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BU of 1h53 by Molmil
Binding of Phosphate and Pyrophosphate ions at the active site of human Angiogenin as revealed by X-ray Crystallography
Descriptor: ANGIOGENIN, CITRIC ACID, PHOSPHATE ION
Authors:Leonidas, D.D, Chavali, G.B, Jardine, A.M, Li, S, Shapiro, R, Acharya, K.R.
Deposit date:2001-05-18
Release date:2001-08-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of Phosphate and Pyrophosphate Ions at the Active Site of Human Angiogenin as Revealed by X-Ray Crystallography
Protein Sci., 10, 2001
1H52
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BU of 1h52 by Molmil
Binding of Phosphate and Pyrophosphate ions at the active site of human Angiogenin as revealed by X-ray Crystallography
Descriptor: ANGIOGENIN, PYROPHOSPHATE 2-
Authors:Leonidas, D.D, Chavali, G.B, Jardine, A.M, Li, S, Shapiro, R, Acharya, K.R.
Deposit date:2001-05-18
Release date:2001-08-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of Phosphate and Pyrophosphate Ions at the Active Site of Human Angiogenin as Revealed by X-Ray Crystallography
Protein Sci., 10, 2001
1H3H
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BU of 1h3h by Molmil
Structural Basis for Specific Recognition of an RxxK-containing SLP-76 peptide by the Gads C-terminal SH3 domain
Descriptor: GRB2-RELATED ADAPTOR PROTEIN 2, LYMPHOCYTE CYTOSOLIC PROTEIN 2
Authors:Liu, Q, Berry, D, Nash, P, Pawson, T, McGlade, C.J, Li, S.S.
Deposit date:2002-09-03
Release date:2003-03-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Basis for Specific Binding of the Gads SH3 Domain to an Rxxk Motif-Containing Slp-76 Peptide: A Novel Mode of Peptide Recognition
Mol.Cell, 11, 2003
8IZ3
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BU of 8iz3 by Molmil
Single excitation and two emissions pH sensor protein(SITE-pHorin)_pH5.5
Descriptor: Green fluorescent protein
Authors:Kang, J.S, Li, S.A.
Deposit date:2023-04-06
Release date:2024-10-09
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:A unified intracellular pH spectrum with sitepHorin-a quantum-entanglement-based pH-sensitive and ratiometric fluorescent protein
To Be Published
1WM2
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BU of 1wm2 by Molmil
Crystal structure of human SUMO-2 protein
Descriptor: Ubiquitin-like protein SMT3B
Authors:Huang, W.-C, Ko, T.-P, Li, S.S.-L, Wang, A.H.-J.
Deposit date:2004-07-02
Release date:2004-11-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of the human SUMO-2 protein at 1.6 A and 1.2 A resolution: implication on the functional differences of SUMO proteins
Eur.J.Biochem., 271, 2004
8GTF
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BU of 8gtf by Molmil
Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex
Descriptor: Head-to-tail joining protein, Major tail protein, Terminator protein
Authors:Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N.
Deposit date:2022-09-08
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structure and proposed DNA delivery mechanism of a marine roseophage.
Nat Commun, 14, 2023
2C7X
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BU of 2c7x by Molmil
Crystal structure of narbomycin-bound cytochrome P450 PikC (CYP107L1)
Descriptor: CYTOCHROME P450 MONOOXYGENASE, NARBOMYCIN, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sherman, D.H, Li, S, Yermalitskaya, L.V, Kim, Y, Smith, J.A, Waterman, M.R, Podust, L.M.
Deposit date:2005-11-29
Release date:2006-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The Structural Basis for Substrate Anchoring, Active Site Selectivity, and Product Formation by P450 Pikc from Streptomyces Venezuelae.
J.Biol.Chem., 281, 2006
1FNK
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BU of 1fnk by Molmil
CRYSTAL STRUCTURE ANALYSIS OF CHORISMATE MUTASE MUTANT C88K/R90S
Descriptor: PROTEIN (CHORISMATE MUTASE)
Authors:Kast, P, Grisostomi, C, Chen, I.A, Li, S, Krengel, U, Xue, Y, Hilvert, D.
Deposit date:2000-08-22
Release date:2000-10-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:A strategically positioned cation is crucial for efficient catalysis by chorismate mutase.
J.Biol.Chem., 275, 2000
8WNG
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BU of 8wng by Molmil
Crystal structure of H. pylori isoleucyl-tRNA synthetase (HpIleRS) in complex with Ile
Descriptor: ACETATE ION, GLYCEROL, ISOLEUCINE, ...
Authors:Guo, Y, Li, S, Zhang, T.
Deposit date:2023-10-05
Release date:2024-02-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural basis for substrate and antibiotic recognition by Helicobacter pylori isoleucyl-tRNA synthetase.
Febs Lett., 598, 2024
8WO3
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BU of 8wo3 by Molmil
Crystal structure of H. pylori isoleucyl-tRNA synthetase (HpIleRS) in complex with Mupirocin
Descriptor: ACETATE ION, GLYCEROL, Isoleucine--tRNA ligase, ...
Authors:Guo, Y, Li, S, Zhang, T.
Deposit date:2023-10-06
Release date:2024-02-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for substrate and antibiotic recognition by Helicobacter pylori isoleucyl-tRNA synthetase.
Febs Lett., 598, 2024
3D23
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BU of 3d23 by Molmil
Main protease of HCoV-HKU1
Descriptor: 3C-like proteinase, N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE
Authors:Zhao, Q, Chen, C, Li, S, Zou, Y.
Deposit date:2008-05-07
Release date:2008-09-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the main protease from a global infectious human coronavirus, HCoV-HKU1.
J.Virol., 82, 2008
8WNI
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BU of 8wni by Molmil
Crystal structure of H. pylori isoleucyl-tRNA synthetase (HpIleRS) in complex with Val
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, GLYCEROL, ...
Authors:Guo, Y, Li, S, Zhang, T.
Deposit date:2023-10-06
Release date:2024-02-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for substrate and antibiotic recognition by Helicobacter pylori isoleucyl-tRNA synthetase.
Febs Lett., 598, 2024

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