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PDB: 272 results

8Y5J
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Cryo-EM structure of SARS-CoV-2 Omicron JN.1 spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Li, L.J, Gu, Y.H, Qi, J.X, Gao, G.F.
Deposit date:2024-01-31
Release date:2024-07-03
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Spike structures, receptor binding, and immune escape of recently circulating SARS-CoV-2 Omicron BA.2.86, JN.1, EG.5, EG.5.1, and HV.1 sub-variants.
Structure, 32, 2024
3B9O
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long-chain alkane monooxygenase (LadA) in complex with coenzyme FMN
Descriptor: Alkane monooxygenase, FLAVIN MONONUCLEOTIDE
Authors:Li, L, Yang, W, Xu, F, Bartlam, M, Rao, Z.
Deposit date:2007-11-06
Release date:2008-01-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of long-chain alkane monooxygenase (LadA) in complex with coenzyme FMN: unveiling the long-chain alkane hydroxylase
J.Mol.Biol., 376, 2008
3B9N
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Crystal structure of long-chain alkane monooxygenase (LadA)
Descriptor: Alkane monooxygenase
Authors:Li, L, Yang, W, Xu, F, Bartlam, M, Rao, Z.
Deposit date:2007-11-06
Release date:2008-01-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of long-chain alkane monooxygenase (LadA) in complex with coenzyme FMN: unveiling the long-chain alkane hydroxylase
J.Mol.Biol., 376, 2008
7SH0
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BU of 7sh0 by Molmil
CRYSTAL STRUCTURE OF ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2 (ERAP2) COMPLEX WITH A HIGHLY SELECTIVE AND POTENT SMALL MOLECULE
Descriptor: (2S)-N-hydroxy-3-(4-methoxyphenyl)-2-[4-({[5-(pyridin-2-yl)thiophene-2-sulfonyl]amino}methyl)-1H-1,2,3-triazol-1-yl]propanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Li, L, Bouvier, M.
Deposit date:2021-10-07
Release date:2022-07-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Discovery of the First Selective Nanomolar Inhibitors of ERAP2 by Kinetic Target-Guided Synthesis.
Angew.Chem.Int.Ed.Engl., 61, 2022
6BR6
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BU of 6br6 by Molmil
N2 neuraminidase in complex with a novel antiviral compound
Descriptor: (1R)-4-acetamido-3-amino-1,5-anhydro-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Li, L.H, Ve, T, Pascolutti, M, Hadhazi, A, Bailly, B, Thomson, R.J, Gao, G.F, von Itzstein, M.
Deposit date:2017-11-30
Release date:2018-03-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.03983879 Å)
Cite:A Sulfonozanamivir Analogue Has Potent Anti-influenza Virus Activity.
ChemMedChem, 13, 2018
6BR5
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N2 neuraminidase in complex with a novel antiviral compound
Descriptor: (1R)-4-acetamido-1,5-anhydro-3-carbamimidamido-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, L.H, Ve, T, Pascolutti, M, Hadhazi, A, Bailly, B, Thomson, R.J, Gao, G.F, von Itzstein, M.
Deposit date:2017-11-30
Release date:2018-03-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.0379076 Å)
Cite:A Sulfonozanamivir Analogue Has Potent Anti-influenza Virus Activity.
ChemMedChem, 13, 2018
7SPR
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BU of 7spr by Molmil
Crystal structure of SMG1 mutant (G28C/P206C/Q34P/A37P/M176V/G177A/M294R/F278N)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LIP1, secretory lipase (Family 3)
Authors:Li, L.L, Wang, Y.H.
Deposit date:2021-11-03
Release date:2023-05-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Lipase SMG1 thermostability optimizing through protein design approach
To Be Published
8XN3
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BU of 8xn3 by Molmil
SARS-CoV-2 Omicron HV.1 RBD in complex with human ACE2 (local refinement from the spike protein)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike protein S1, ...
Authors:Li, L.J, Gu, Y.H, Shi, K.Y, Qi, J.X, Gao, G.F.
Deposit date:2023-12-28
Release date:2024-07-03
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:Spike structures, receptor binding, and immune escape of recently circulating SARS-CoV-2 Omicron BA.2.86, JN.1, EG.5, EG.5.1, and HV.1 sub-variants.
Structure, 32, 2024
8XN2
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SARS-CoV-2 Omicron EG.5.1 RBD in complex with human ACE2 (local refined from the spike protein)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike protein S1, ...
Authors:Li, L.J, Gu, Y.H, Shi, K.Y, Qi, J.X, Gao, G.F.
Deposit date:2023-12-28
Release date:2024-07-03
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Spike structures, receptor binding, and immune escape of recently circulating SARS-CoV-2 Omicron BA.2.86, JN.1, EG.5, EG.5.1, and HV.1 sub-variants.
Structure, 32, 2024
2I5N
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1.96 A X-ray structure of photosynthetic reaction center from Rhodopseudomonas viridis:Crystals grown by microfluidic technique
Descriptor: 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ...
Authors:Li, L, Mustafi, D, Fu, Q, Tereshko, V, Chen, D.L, Tice, J.D, Ismagilov, R.F.
Deposit date:2006-08-25
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Nanoliter microfluidic hybrid method for simultaneous screening and optimization validated with crystallization of membrane proteins.
Proc.Natl.Acad.Sci.Usa, 103, 2006
3D38
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BU of 3d38 by Molmil
Crystal structure of new trigonal form of photosynthetic reaction center from Blastochloris viridis. Crystals grown in microfluidics by detergent capture.
Descriptor: 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ...
Authors:Li, L, Nachtergaele, S.H.M, Seddon, A.M, Tereshko, V, Ponomarenko, N, Ismagilov, R.F, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)
Deposit date:2008-05-09
Release date:2008-07-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Simple host-guest chemistry to modulate the process of concentration and crystallization of membrane proteins by detergent capture in a microfluidic device.
J.Am.Chem.Soc., 130, 2008
7N8T
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BU of 7n8t by Molmil
Crystal Structure of AMP-bound Human JNK2
Descriptor: ADENOSINE MONOPHOSPHATE, HEXAETHYLENE GLYCOL, Mitogen-activated protein kinase 9
Authors:Li, L, Gurbani, D, Westover, K.D.
Deposit date:2021-06-15
Release date:2022-06-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Development of a Covalent Inhibitor of c-Jun N-Terminal Protein Kinase (JNK) 2/3 with Selectivity over JNK1.
J.Med.Chem., 66, 2023
7XB0
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BU of 7xb0 by Molmil
Crystal structure of Omicron BA.2 RBD complexed with hACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Li, L, Liao, H, Meng, Y, Li, W.
Deposit date:2022-03-19
Release date:2022-07-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of human ACE2 higher binding affinity to currently circulating Omicron SARS-CoV-2 sub-variants BA.2 and BA.1.1.
Cell, 185, 2022
6P27
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BU of 6p27 by Molmil
Structure of a nested set of N-terminally extended MHC I-peptides provides novel insights into antigen processing and presentation
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-8 alpha chain, ...
Authors:Li, L, Batliwala, M, Bouvier, M.
Deposit date:2019-05-21
Release date:2019-10-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.593 Å)
Cite:ERAP1 enzyme-mediated trimming and structural analyses of MHC I-bound precursor peptides yield novel insights into antigen processing and presentation.
J.Biol.Chem., 294, 2019
6P2C
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BU of 6p2c by Molmil
Structure of a nested set of N-terminally extended MHC I-peptides provides novel insights into antigen processing and presentation
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-8 alpha chain, ...
Authors:Li, L, Batliwala, M, Bouvier, M.
Deposit date:2019-05-21
Release date:2019-10-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.396 Å)
Cite:ERAP1 enzyme-mediated trimming and structural analyses of MHC I-bound precursor peptides yield novel insights into antigen processing and presentation.
J.Biol.Chem., 294, 2019
6P2S
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BU of 6p2s by Molmil
Structure of a nested set of N-terminally extended MHC I-peptides provide novel insights into antigen processing and presentation
Descriptor: Beta-2-microglobulin, MHC I-peptide, MHC class I antigen
Authors:Li, L, Batliwala, M, Bouvier, M.
Deposit date:2019-05-22
Release date:2019-10-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:ERAP1 enzyme-mediated trimming and structural analyses of MHC I-bound precursor peptides yield novel insights into antigen processing and presentation.
J.Biol.Chem., 294, 2019
6P2F
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BU of 6p2f by Molmil
Structure of a nested set of N-terminally extended MHC I-peptides provides novel insights into antigen processing and presentation
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-8 alpha chain, ...
Authors:Li, L, Batliwala, M, Bouvier, M.
Deposit date:2019-05-21
Release date:2019-10-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.482 Å)
Cite:ERAP1 enzyme-mediated trimming and structural analyses of MHC I-bound precursor peptides yield novel insights into antigen processing and presentation.
J.Biol.Chem., 294, 2019
6P23
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BU of 6p23 by Molmil
Structure of a nested set of N-terminally extended MHC I-peptides provide novel insights into antigen processing presentation
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-8 alpha chain, ...
Authors:Li, L, Batliwala, M, Bouvier, M.
Deposit date:2019-05-20
Release date:2019-10-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.595 Å)
Cite:ERAP1 enzyme-mediated trimming and structural analyses of MHC I-bound precursor peptides yield novel insights into antigen processing and presentation.
J.Biol.Chem., 294, 2019
2MMF
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BU of 2mmf by Molmil
Solution structure of AGA modified
Descriptor: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*AP*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*TP*CP*TP*TP*AP*G)-3')
Authors:Li, L, Stone, M.
Deposit date:2014-03-14
Release date:2015-02-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct.
Chem.Res.Toxicol., 28, 2015
2MMR
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BU of 2mmr by Molmil
AGC FAPY modified duplex Major isomer
Descriptor: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*CP*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*GP*CP*TP*TP*AP*G)-3')
Authors:Li, L, Stone, M.
Deposit date:2014-03-17
Release date:2015-02-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct.
Chem.Res.Toxicol., 28, 2015
2MMQ
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BU of 2mmq by Molmil
Solution structure of AGT FAPY Modified duplex
Descriptor: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*TP*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*AP*CP*TP*TP*AP*G)-3')
Authors:Li, L, Stone, M.
Deposit date:2014-03-17
Release date:2015-02-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct.
Chem.Res.Toxicol., 28, 2015
2MMS
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BU of 2mms by Molmil
AG(7-deaza)G FAPY modified duplex
Descriptor: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*(7GU)P*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*CP*CP*TP*TP*AP*G)-3')
Authors:Li, L, Stone, M.
Deposit date:2014-03-17
Release date:2015-02-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct.
Chem.Res.Toxicol., 28, 2015
3KJR
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BU of 3kjr by Molmil
Crystal structure of dihydrofolate reductase/thymidylate synthase from Babesia bovis determined using SlipChip based microfluidics
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Dihydrofolate reductase/thymidylate synthase, GLYCEROL, ...
Authors:Li, L, Du, W, Edwards, T.E, Staker, B.L, Phan, I, Stacy, R, Ismagilov, R.F, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-11-03
Release date:2009-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Multiparameter screening on SlipChip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods.
J.Am.Chem.Soc., 132, 2010
1Q94
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BU of 1q94 by Molmil
Structures of HLA-A*1101 in complex with immunodominant nonamer and decamer HIV-1 epitopes clearly reveal the presence of a middle anchor residue
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-11 alpha chain, ...
Authors:Li, L, McNicholl, J.M, Bouvier, M.
Deposit date:2003-08-22
Release date:2004-06-01
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of HLA-A*1101 complexed with immunodominant nonamer and decamer HIV-1 epitopes clearly reveal the presence of a middle, secondary anchor residue.
J.Immunol., 172, 2004
5IRO
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BU of 5iro by Molmil
Crystal structure of a complex between the Human adenovirus type 4 E3-19K protein and MHC class molecule HLA-A2/TAX
Descriptor: Beta-2-microglobulin, E3 19 kDa protein, HLA class I histocompatibility antigen, ...
Authors:Li, L, Bouvier, M.
Deposit date:2016-03-14
Release date:2016-08-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structure of the Adenovirus Type 4 (Species E) E3-19K/HLA-A2 Complex Reveals Species-Specific Features in MHC Class I Recognition.
J Immunol., 197, 2016

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