Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1804 results

6JHQ
DownloadVisualize
BU of 6jhq by Molmil
The cryo-EM structure of HAV bound to a neutralizing antibody-F4
Descriptor: FAB Heavy Chain, FAB Light Chain, VP1, ...
Authors:Cao, L, Liu, P, Yang, P, Gao, Q, Li, H, Sun, Y, Zhu, L, Lin, J, Su, D, Rao, Z, Wang, X.
Deposit date:2019-02-18
Release date:2020-03-18
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis for neutralization of hepatitis A virus informs a rational design of highly potent inhibitors.
Plos Biol., 17, 2019
5YC4
DownloadVisualize
BU of 5yc4 by Molmil
Crystal structure of AL3 PHD finger bound to H3K4me3
Descriptor: Histone H3K4me3, PHD finger protein ALFIN-LIKE 3, ZINC ION
Authors:Zhao, S, Zhang, B, Li, H.
Deposit date:2017-09-06
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.697 Å)
Cite:Systematic Profiling of Histone Readers in Arabidopsis thaliana.
Cell Rep, 22, 2018
5YC3
DownloadVisualize
BU of 5yc3 by Molmil
Crystal structure of AL3 PHD finger bound to H3K4me2
Descriptor: H3K4me2, PHD finger protein ALFIN-LIKE 3, ZINC ION
Authors:Zhao, S, Zhang, B, Li, H.
Deposit date:2017-09-06
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Systematic Profiling of Histone Readers in Arabidopsis thaliana.
Cell Rep, 22, 2018
5YKI
DownloadVisualize
BU of 5yki by Molmil
Crystal structure of the engineered nine-repeat PUF domain in complex with cognate 9nt-RNA
Descriptor: Pumilio homolog 1, RNA (5'-R(*UP*GP*UP*UP*GP*UP*AP*UP*A)-3')
Authors:Zhao, Y.Y, Wang, J, Li, H.T, Wang, Z.X, Wu, J.W.
Deposit date:2017-10-14
Release date:2018-03-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Expanding RNA binding specificity and affinity of engineered PUF domains.
Nucleic Acids Res., 46, 2018
6JHS
DownloadVisualize
BU of 6jhs by Molmil
The cryo-EM structure of HAV bound to a neutralizing antibody-F7
Descriptor: FAB Heavy Chain, FAB Light Chain, VP1, ...
Authors:Cao, L, Liu, P, Yang, P, Gao, Q, Li, H, Sun, Y, Zhu, L, Lin, J, Su, D, Rao, Z, Wang, X.
Deposit date:2019-02-19
Release date:2020-03-18
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural basis for neutralization of hepatitis A virus informs a rational design of highly potent inhibitors.
Plos Biol., 17, 2019
5YKH
DownloadVisualize
BU of 5ykh by Molmil
Crystal structure of the engineered nine-repeat PUF domain
Descriptor: PHOSPHATE ION, Pumilio homolog 1
Authors:Zhao, Y.Y, Wang, J, Li, H.T, Wang, Z.X, Wu, J.W.
Deposit date:2017-10-14
Release date:2018-03-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.457 Å)
Cite:Expanding RNA binding specificity and affinity of engineered PUF domains.
Nucleic Acids Res., 46, 2018
7WHR
DownloadVisualize
BU of 7whr by Molmil
Cryo-EM Structure of Leishmanial GDP-mannose pyrophosphorylase
Descriptor: Nucleotidyl transferase family protein
Authors:Xu, W, Li, H, Huang, C.
Deposit date:2021-12-31
Release date:2022-09-21
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into selective inhibition of leishmanial GDP-mannose pyrophosphorylase.
Cell Discov, 8, 2022
5XFO
DownloadVisualize
BU of 5xfo by Molmil
Structure of the N-terminal domains of PHF1
Descriptor: PHD finger protein 1, ZINC ION
Authors:Wang, Z, Li, H.
Deposit date:2017-04-11
Release date:2017-09-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Polycomb-like proteins link the PRC2 complex to CpG islands
Nature, 549, 2017
5Z93
DownloadVisualize
BU of 5z93 by Molmil
Crystal Structure of SIRT3 in complex with H3K9bhb peptide
Descriptor: Gene for histone H3 (germline gene), NAD-dependent protein deacetylase sirtuin-3, mitochondrial, ...
Authors:Zhang, X, Li, H.
Deposit date:2018-02-02
Release date:2019-02-06
Method:X-RAY DIFFRACTION (1.945 Å)
Cite:Crystal Structure of SIRT3 in complex with H3K9bhb peptide
To Be Published
6KDS
DownloadVisualize
BU of 6kds by Molmil
Crystal structure of human NRMT2 in complex with alpha-N-monomethylated human CENP-A peptide
Descriptor: Alpha N-terminal protein methyltransferase 1B, CENP-A peptide, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Yue, Y, Li, H.
Deposit date:2019-07-02
Release date:2020-07-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.844 Å)
Cite:Substrate engagement regulates state-specific alpha-N methylation of CENP-A by NRMT2
To be published
6L94
DownloadVisualize
BU of 6l94 by Molmil
The structure of the dioxygenase ABH1 from mouse
Descriptor: FE (II) ION, Nucleic acid dioxygenase ALKBH1
Authors:Xie, W, Wang, C, Li, H, Zhang, Y.
Deposit date:2019-11-08
Release date:2020-11-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.10012341 Å)
Cite:ALKBH1 promotes lung cancer by regulating m6A RNA demethylation.
Biochem Pharmacol, 189, 2021
5WXG
DownloadVisualize
BU of 5wxg by Molmil
Structure of TAF PHD finger domain binds to H3(1-15)K4ac
Descriptor: Histone H3K4ac, MAGNESIUM ION, Transcription initiation factor TFIID subunit 3, ...
Authors:Zhao, S, Li, H.
Deposit date:2017-01-07
Release date:2017-08-16
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.703 Å)
Cite:Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5XFN
DownloadVisualize
BU of 5xfn by Molmil
Structure of the N-terminal domains of PHF1
Descriptor: PHD finger protein 1, ZINC ION
Authors:Wang, Z, Li, H.
Deposit date:2017-04-11
Release date:2017-09-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Polycomb-like proteins link the PRC2 complex to CpG islands
Nature, 549, 2017
6JHT
DownloadVisualize
BU of 6jht by Molmil
The cryo-EM structure of HAV bound to a neutralizing antibody-F9
Descriptor: FAB Heavy Chain, FAB Light Chain, VP1, ...
Authors:Cao, L, Liu, P, Yang, P, Gao, Q, Li, H, Sun, Y, Zhu, L, Lin, J, Su, D, Rao, Z, Wang, X.
Deposit date:2019-02-19
Release date:2020-03-18
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structural basis for neutralization of hepatitis A virus informs a rational design of highly potent inhibitors.
Plos Biol., 17, 2019
7E9M
DownloadVisualize
BU of 7e9m by Molmil
Crystal Structure of Spindlin1 bound to SPINDOC Docpep3
Descriptor: Peptide from Spindlin interactor and repressor of chromatin-binding protein, Spindlin-1
Authors:Zhao, F, Li, H.
Deposit date:2021-03-04
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular basis for SPINDOC-Spindlin1 engagement and its role in transcriptional inhibition
to be published
7EA1
DownloadVisualize
BU of 7ea1 by Molmil
Crystal Structure of Spindlin1 bound to SPINDOC Docpep2
Descriptor: Peptide from Spindlin interactor and repressor of chromatin-binding protein, Spindlin-1
Authors:Zhao, F, Li, H.
Deposit date:2021-03-05
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis for SPINDOC-Spindlin1 engagement and its role in transcriptional inhibition
to be published
4DFU
DownloadVisualize
BU of 4dfu by Molmil
Inhibition of an antibiotic resistance enzyme: crystal structure of aminoglycoside phosphotransferase APH(2")-ID/APH(2")-IVA in complex with kanamycin inhibited with quercetin
Descriptor: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, APH(2")-Id, CHLORIDE ION, ...
Authors:Stogios, P.J, Minasov, G, Dong, A, Evdokimova, E, Egorova, E, Di Leo, R, Li, H, Shakya, T, Wright, G.D, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-01-24
Release date:2012-02-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:A small molecule discrimination map of the antibiotic resistance kinome.
Chem.Biol., 18, 2011
2RSX
DownloadVisualize
BU of 2rsx by Molmil
Solution structure of IseA, an inhibitor protein of DL-endopeptidases from Bacillus subtilis
Descriptor: Uncharacterized protein yoeB
Authors:Arai, R, Li, H, Tochio, N, Fukui, S, Kobayashi, N, Kitaura, C, Watanabe, S, Kigawa, T, Sekiguchi, J.
Deposit date:2012-08-09
Release date:2012-10-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution Structure of IseA, an Inhibitor Protein of DL-Endopeptidases from Bacillus subtilis, Reveals a Novel Fold with a Characteristic Inhibitory Loop
J.Biol.Chem., 287, 2012
8KCO
DownloadVisualize
BU of 8kco by Molmil
Cryo-EM structure of human gamma-secretase in complex with RO4929097
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2,2-dimethyl-N-[(7S)-6-oxo-5,7-dihydrobenzo[d][1]benzazepin-7-yl]-N'-(2,2,3,3,3-pentafluoropropyl)propanediamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Guo, X, Li, H, Kai, U, Yan, C, Lei, J, Zhou, R, Shi, Y.
Deposit date:2023-08-08
Release date:2024-08-14
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:CryoEM structure of PS1-containing gamma-secretase in complex with MRK-560
To Be Published
4DBX
DownloadVisualize
BU of 4dbx by Molmil
Crystal structure of aminoglycoside phosphotransferase APH(2")-ID/APH(2")-IVA
Descriptor: APH(2")-ID
Authors:Stogios, P.J, Minasov, G, Tan, K, Nocek, B, Singer, A.U, Evdokimova, E, Egorova, E, Di Leo, R, Li, H, Shakya, T, Wright, G.D, Savchenko, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-01-16
Release date:2012-02-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:A small molecule discrimination map of the antibiotic resistance kinome.
Chem.Biol., 18, 2011
4DFB
DownloadVisualize
BU of 4dfb by Molmil
Crystal structure of aminoglycoside phosphotransferase aph(2")-id/aph(2")-iva in complex with kanamycin
Descriptor: APH(2")-Id, CHLORIDE ION, KANAMYCIN A
Authors:Stogios, P.J, Minasov, G, Osipiuk, J, Evdokimova, E, Egorova, E, Di leo, R, Li, H, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-01-23
Release date:2012-02-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A small molecule discrimination map of the antibiotic resistance kinome.
Chem.Biol., 18, 2011
2ECC
DownloadVisualize
BU of 2ecc by Molmil
Solution Structure of the second Homeobox Domain of Human Homeodomain Leucine Zipper-Encoding Gene (Homez)
Descriptor: Homeobox and leucine zipper protein Homez
Authors:Ohnishi, S, Kamatari, Y.O, Tochio, N, Nameki, N, Miyamoto, K, Li, H, Kobayashi, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-13
Release date:2007-02-27
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of the second Homeobox Domain of Human Homeodomain Leucine Zipper-Encoding Gene (Homez)
To be Published
3IYM
DownloadVisualize
BU of 3iym by Molmil
Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron Cryomicroscopy and Homology Modeling
Descriptor: Capsid protein
Authors:Tang, J, Pan, J, Havens, W.F, Ochoa, W.F, Li, H, Sinkovits, R.S, Guu, T.S.Y, Ghabrial, S.A, Nibert, M.L, Tao, J.Y, Baker, T.S.
Deposit date:2010-02-05
Release date:2010-07-28
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Backbone Trace of Partitivirus Capsid Protein from Electron Cryomicroscopy and Homology Modeling
Biophys.J., 99, 2010
4DE4
DownloadVisualize
BU of 4de4 by Molmil
Crystal structure of aminoglycoside phosphotransferase APH(2")-Id/APH(2")-IVa in complex with HEPES
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, APH(2")-Id
Authors:Stogios, P.J, Minasov, G, Tan, K, Nocek, B, Evdokimova, E, Egorova, O, Di Leo, R, Li, H, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-01-19
Release date:2012-02-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:A small molecule discrimination map of the antibiotic resistance kinome.
Chem.Biol., 18, 2011
5ZMR
DownloadVisualize
BU of 5zmr by Molmil
Solution Structure of the N-terminal Domain of the Yeast Rpn5
Descriptor: 26S proteasome regulatory subunit RPN5
Authors:Zhang, W, Zhao, C, Li, H, Hu, Y, Jin, C.
Deposit date:2018-04-05
Release date:2018-09-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal domain of proteasome lid subunit Rpn5
Biochem. Biophys. Res. Commun., 504, 2018

226707

數據於2024-10-30公開中

PDB statisticsPDBj update infoContact PDBjnumon