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PDB: 247 results

4OCA
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BU of 4oca by Molmil
Cryatal structure of ArnB K188A complexted with PLP and UDP-Ara4N
Descriptor: (2R,3R,4S,5S)-3,4-dihydroxy-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]tetrahydro-2H-pyr an-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate, UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
Authors:Sousa, M.C, Lee, M.
Deposit date:2014-01-08
Release date:2014-03-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for Substrate Specificity in ArnB. A Key Enzyme in the Polymyxin Resistance Pathway of Gram-Negative Bacteria.
Biochemistry, 53, 2014
6DLN
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BU of 6dln by Molmil
Oligomeric Structure of the HIV gp41 MPER-TMD in Phospholipid Bilayers
Descriptor: Transmembrane protein gp41
Authors:Kwon, B, Lee, M, Waring, A.J, Hong, M.
Deposit date:2018-06-01
Release date:2018-08-08
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:Oligomeric Structure and Three-Dimensional Fold of the HIV gp41 Membrane-Proximal External Region and Transmembrane Domain in Phospholipid Bilayers.
J. Am. Chem. Soc., 140, 2018
1VZK
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BU of 1vzk by Molmil
A Thiophene Based Diamidine Forms a "Super" AT Binding Minor Groove Agent
Descriptor: 2-(5-{4-[AMINO(IMINO)METHYL]PHENYL}-2-THIENYL)-1H-BENZIMIDAZOLE-6- CARBOXIMIDAMIDE DIHYDROCHLORIDE, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP *CP*G)-3', MAGNESIUM ION
Authors:Mallena, S, Lee, M.P.H, Bailly, C, Neidle, S, Kumar, A, Boykin, D.W, Wilson, W.D.
Deposit date:2004-05-20
Release date:2004-10-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Thiophene-Based Diamidine Forms a "Super" at Binding Minor Groove Agent
J.Am.Chem.Soc., 142, 2004
6KTA
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BU of 6kta by Molmil
Crystal structure of B. halodurans MntR in apo form
Descriptor: GLYCEROL, HTH-type transcriptional regulator MntR
Authors:Lee, J.Y, Lee, M.Y.
Deposit date:2019-08-26
Release date:2019-12-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural analysis of the manganese transport regulator MntR from Bacillus halodurans in apo and manganese bound forms.
Plos One, 14, 2019
7CV0
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BU of 7cv0 by Molmil
Crystal structure of B. halodurans NiaR in apo form
Descriptor: Transcriptional regulator NiaR, ZINC ION
Authors:Lee, J.Y, Lee, D.W, Park, Y.W, Lee, M.Y, Jeong, K.H.
Deposit date:2020-08-25
Release date:2020-12-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:Structural analysis and insight into effector binding of the niacin-responsive repressor NiaR from Bacillus halodurans.
Sci Rep, 10, 2020
6LCI
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BU of 6lci by Molmil
Solution structure of mdaA-1 domain
Descriptor: mdaA-1
Authors:Nguyen, T.A, Le, S, Lee, M, Fan, J.S, Yang, D, Yan, J, Jedd, G.
Deposit date:2019-11-19
Release date:2020-11-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Fungal Wound Healing through Instantaneous Protoplasmic Gelation.
Curr.Biol., 31, 2021
7QAJ
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BU of 7qaj by Molmil
ZK002 with Anti-angiogenic and Anti-inflamamtory Properties
Descriptor: SULFATE ION, Snaclec clone 2100755 alpha, Snaclec clone 2100755 beta
Authors:Wong, W.Y, Chan, B.D, Muk Lan Lee, M, Dai, X, Tsim, K.W.K, Hsiao, W.L.W, Li, M, Li, X.Y, Tai, W.C.S.
Deposit date:2021-11-17
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Isolation and characterization of ZK002, a novel dual function snake venom protein from Deinagkistrodon acutus with anti-angiogenic and anti-inflammatory properties.
Front Pharmacol, 14, 2023
7D47
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BU of 7d47 by Molmil
Crystal structure of SARS-CoV-2 Papain-like protease C111S
Descriptor: CALCIUM ION, Non-structural protein 3, ZINC ION
Authors:Wu, K.-P, Chen, S.-K, Lu, Y.-C, Huang, Y.-C.J, Lee, M.-H.
Deposit date:2020-09-22
Release date:2020-10-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of SARS-CoV-2 Papain-like protease
To Be Published
6UE0
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BU of 6ue0 by Molmil
Crystal structure of dihydrodipicolinate synthase from Klebsiella pneumoniae bound to pyruvate
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, CHLORIDE ION, SULFATE ION
Authors:Impey, R.E, Lee, M, Hawkins, D.A, Sutton, J.M, Panjikar, S, Perugini, M.A, Soares da Costa, T.P.
Deposit date:2019-09-20
Release date:2020-02-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.892 Å)
Cite:Mis-annotations of a promising antibiotic target in high-priority gram-negative pathogens.
Febs Lett., 594, 2020
8EZE
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BU of 8eze by Molmil
Brain-derived 42-residue amyloid-beta fibril type B
Descriptor: Beta-amyloid protein 42
Authors:Tycko, R, Lee, M, Yau, Y.-M, Louis, J.M.
Deposit date:2022-10-31
Release date:2023-03-22
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Structures of brain-derived 42-residue amyloid-beta fibril polymorphs with unusual molecular conformations and intermolecular interactions.
Proc.Natl.Acad.Sci.USA, 120, 2023
7CV2
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BU of 7cv2 by Molmil
Crystal structure of B. halodurans NiaR in niacin-bound form
Descriptor: NICOTINIC ACID, Transcriptional regulator NiaR, ZINC ION
Authors:Lee, J.Y, Lee, D.W, Park, Y.W, Lee, M.Y, Jeong, K.H.
Deposit date:2020-08-25
Release date:2020-12-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Structural analysis and insight into effector binding of the niacin-responsive repressor NiaR from Bacillus halodurans.
Sci Rep, 10, 2020
8EZD
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BU of 8ezd by Molmil
Brain-derived 42-residue amyloid-beta fibril type A
Descriptor: Beta-amyloid protein 42
Authors:Tycko, R, Lee, M, Yau, Y.-M, Louis, J.M.
Deposit date:2022-10-31
Release date:2023-03-22
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Structures of brain-derived 42-residue amyloid-beta fibril polymorphs with unusual molecular conformations and intermolecular interactions.
Proc.Natl.Acad.Sci.USA, 120, 2023
6UWZ
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BU of 6uwz by Molmil
Cryo-EM structure of Torpedo acetylcholine receptor in complex with alpha-bungarotoxin
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor subunit alpha, ...
Authors:Rahman, M.M, Teng, J, Worrell, B.T, Noveillo, C.M, Lee, M, Karlin, A, Stowell, M, Hibbs, R.E.
Deposit date:2019-11-06
Release date:2020-04-15
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Structure of the Native Muscle-type Nicotinic Receptor and Inhibition by Snake Venom Toxins.
Neuron, 106, 2020
6XFM
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BU of 6xfm by Molmil
Molecular structure of the core of amyloid-like fibrils formed by residues 111-214 of FUS
Descriptor: RNA-binding protein FUS
Authors:Tycko, R, Lee, M, Ghosh, U, Thurber, K, Kato, M.
Deposit date:2020-06-15
Release date:2020-10-07
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Molecular structure and interactions within amyloid-like fibrils formed by a low-complexity protein sequence from FUS.
Nat Commun, 11, 2020
8HM5
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BU of 8hm5 by Molmil
Epoxide hydrolase from Caballeronia sordidicola PAMC 26510
Descriptor: Epoxide hydrolase
Authors:Hwang, J, Lee, M.J, Do, H, Lee, J.H.
Deposit date:2022-12-02
Release date:2023-12-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structural insights into the distinct substrate preferences of two bacterial epoxide hydrolases.
Int.J.Biol.Macromol., 264, 2024
2RGT
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BU of 2rgt by Molmil
Crystal Structure of Lhx3 LIM domains 1 and 2 with the binding domain of Isl1
Descriptor: Fusion of LIM/homeobox protein Lhx3, linker, Insulin gene enhancer protein ISL-1, ...
Authors:Bhati, M, Lee, M, Guss, J.M, Matthews, J.M.
Deposit date:2007-10-05
Release date:2008-08-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Implementing the LIM code: the structural basis for cell type-specific assembly of LIM-homeodomain complexes.
Embo J., 27, 2008
7SMT
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BU of 7smt by Molmil
Cryo-EM structure of Torpedo acetylcholine receptor in complex with d-tubocurarine and carbachol
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-[(AMINOCARBONYL)OXY]-N,N,N-TRIMETHYLETHANAMINIUM, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rahman, M.M, Basta, T, Teng, J, Lee, M, Worrell, B.T, Stowell, M.H.B, Hibbs, R.E.
Deposit date:2021-10-26
Release date:2022-03-09
Last modified:2022-04-27
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structural mechanism of muscle nicotinic receptor desensitization and block by curare.
Nat.Struct.Mol.Biol., 29, 2022
7SMS
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BU of 7sms by Molmil
Cryo-EM structure of Torpedo acetylcholine receptor in complex with d-tubocurarine
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor subunit alpha, ...
Authors:Rahman, M.M, Basta, T, Teng, J, Lee, M, Worrell, B.T, Stowell, M.H.B, Hibbs, R.E.
Deposit date:2021-10-26
Release date:2022-03-09
Last modified:2022-04-27
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Structural mechanism of muscle nicotinic receptor desensitization and block by curare.
Nat.Struct.Mol.Biol., 29, 2022
1C03
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BU of 1c03 by Molmil
CRYSTAL STRUCTURE OF YPD1P (TRICLINIC FORM)
Descriptor: HYPOTHETICAL PROTEIN YDL235C
Authors:Song, H.K, Lee, J.Y, Lee, M.G, Suh, S.W.
Deposit date:1999-07-14
Release date:2000-01-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Insights into eukaryotic multistep phosphorelay signal transduction revealed by the crystal structure of Ypd1p from Saccharomyces cerevisiae.
J.Mol.Biol., 293, 1999
6Z3C
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BU of 6z3c by Molmil
High resolution structure of RgNanOx
Descriptor: CITRATE ANION, Gfo/Idh/MocA family oxidoreductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Naismith, J.H, Lee, M.O.
Deposit date:2020-05-19
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Uncovering a novel molecular mechanism for scavenging sialic acids in bacteria.
J.Biol.Chem., 295, 2020
7SMR
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BU of 7smr by Molmil
Cryo-EM structure of Torpedo acetylcholine receptor in complex with carbachol, desensitized state
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-[(AMINOCARBONYL)OXY]-N,N,N-TRIMETHYLETHANAMINIUM, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rahman, M.M, Basta, T, Teng, J, Lee, M, Worrell, B.T, Stowell, M.H.B, Hibbs, R.E.
Deposit date:2021-10-26
Release date:2022-03-09
Last modified:2022-04-27
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Structural mechanism of muscle nicotinic receptor desensitization and block by curare.
Nat.Struct.Mol.Biol., 29, 2022
7SMM
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BU of 7smm by Molmil
Cryo-EM structure of Torpedo acetylcholine receptor in apo form
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rahman, M.M, Basta, T, Teng, J, Lee, M, Worrell, B.T, Stowell, M.H.B, Hibbs, R.E.
Deposit date:2021-10-26
Release date:2022-03-09
Last modified:2022-04-27
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural mechanism of muscle nicotinic receptor desensitization and block by curare.
Nat.Struct.Mol.Biol., 29, 2022
7SMQ
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BU of 7smq by Molmil
Cryo-EM structure of Torpedo acetylcholine receptor in apo form with added cholesterol
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rahman, M.M, Basta, T, Teng, J, Lee, M, Worrell, B.T, Stowell, M.H.B, Hibbs, R.E.
Deposit date:2021-10-26
Release date:2022-03-09
Last modified:2022-04-27
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural mechanism of muscle nicotinic receptor desensitization and block by curare.
Nat.Struct.Mol.Biol., 29, 2022
1C02
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BU of 1c02 by Molmil
CRYSTAL STRUCTURE OF YEAST YPD1P
Descriptor: PHOSPHOTRANSFERASE YPD1P
Authors:Song, H.K, Lee, J.Y, Lee, M.G, Suh, S.W.
Deposit date:1999-07-14
Release date:2000-01-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Insights into eukaryotic multistep phosphorelay signal transduction revealed by the crystal structure of Ypd1p from Saccharomyces cerevisiae.
J.Mol.Biol., 293, 1999
6IJQ
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BU of 6ijq by Molmil
Solution structure of BCL-XL bound to P73-TAD peptide
Descriptor: Bcl-2-like protein 1,Bcl-2-like protein 1, Tumor protein p73
Authors:Yoon, M.-K, Ha, J.-H, Lee, M.-S, Chi, S.-W.
Deposit date:2018-10-11
Release date:2018-11-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Cytoplasmic pro-apoptotic function of the tumor suppressor p73 is mediated through a modified mode of recognition of the anti-apoptotic regulator Bcl-XL.
J. Biol. Chem., 293, 2018

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