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PDB: 262 results

8UF7
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Cryo-EM structure of POmAb, a Type-I anti-prothrombin antiphospholipid antibody, bound to kringle-1 of human prothrombin
Descriptor: POmAb Heavy Chain, POmAb Light Chain, Prothrombin
Authors:Kumar, S, Summers, B, Basore, K, Pozzi, N.
Deposit date:2023-10-03
Release date:2024-02-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure and functional basis of prothrombin recognition by a type I antiprothrombin antiphospholipid antibody.
Blood, 143, 2024
6CA8
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BU of 6ca8 by Molmil
Crystal structure of Plasmodium falciparum topoisomerase II DNA-binding, cleavage and re-ligation domain
Descriptor: DNA topoisomerase 2
Authors:Kumar, S, Kandavelu, P, Rathod, P.K.
Deposit date:2018-01-29
Release date:2019-02-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.331 Å)
Cite:Crystal structure of Plasmodium falciparum topoisomerase II DNA-binding, cleavage and re-ligation domain
To Be Published
6CE0
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BU of 6ce0 by Molmil
Crystal structure of a HIV-1 clade B tier-3 isolate H078.14 UFO-BG Env trimer in complex with broadly neutralizing Fabs PGT124 and 35O22 at 4.6 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22 Heavy chain, ...
Authors:Kumar, S, Sarkar, A, Wilson, I.A.
Deposit date:2018-02-09
Release date:2018-12-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (4.602 Å)
Cite:HIV-1 vaccine design through minimizing envelope metastability.
Sci Adv, 4, 2018
8X1H
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BU of 8x1h by Molmil
Crystal structure of N-terminal domain of Nucleocapsid protein of SARS-CoV-2
Descriptor: GLYCEROL, Nucleoprotein
Authors:Kumari, S, Gupta, G.D.
Deposit date:2023-11-07
Release date:2023-11-22
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Unveiling potential inhibitors targeting the nucleocapsid protein of SARS-CoV-2: Structural insights into their binding sites.
Int.J.Biol.Macromol., 273, 2024
6A8D
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BU of 6a8d by Molmil
Crystal Structure of Chlamydomonas reinhardtii ARF
Descriptor: ARF/SAR superfamily small monomeric GTP binding protein, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kumari, S, Goel, M, Kateriya, S, Sharma, P.
Deposit date:2018-07-06
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Crystal structure of Chlamydomonas reinhardtii Arf
To Be Published
6A88
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Crystal Structure of T. gondii prolyl tRNA synthetase with Febrifugine and ATP Analog
Descriptor: 3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Kumari, S, Mishra, S, Yogavel, M, Sharma, A.
Deposit date:2018-07-06
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.596 Å)
Cite:Conformational heterogeneity in apo and drug-bound structures of Toxoplasma gondii prolyl-tRNA synthetase.
Acta Crystallogr.,Sect.F, 75, 2019
6JP9
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BU of 6jp9 by Molmil
Crsytal structure of a XMP complexed ATPPase subunit of M. jannaschii GMP synthetase
Descriptor: GMP synthase [glutamine-hydrolyzing] subunit B, MALONIC ACID, TRIETHYLENE GLYCOL, ...
Authors:Shivakumarasamy, S, Balaram, H.
Deposit date:2019-03-26
Release date:2020-04-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mechanistic Insights into the Functioning of a Two-Subunit GMP Synthetase, an Allosterically Regulated, Ammonia Channeling Enzyme.
Biochemistry, 61, 2022
2F8Q
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An alkali thermostable F/10 xylanase from alkalophilic Bacillus sp. NG-27
Descriptor: MAGNESIUM ION, alkaline thermostable endoxylanase
Authors:Ramakumar, S, Manikandan, K, Bhardwaj, A, Ghosh, A, Reddy, V.S.
Deposit date:2005-12-03
Release date:2006-09-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions.
Protein Sci., 15, 2006
2FGL
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An alkali thermostable F/10 xylanase from alkalophilic Bacillus sp. NG-27
Descriptor: MAGNESIUM ION, alkaline thermostable endoxylanase, alpha-D-xylopyranose, ...
Authors:Ramakumar, S, Manikandan, K, Bhardwaj, A, Reddy, V.S, Lokanath, N.K, Ghosh, A.
Deposit date:2005-12-22
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions.
Protein Sci., 15, 2006
5XLU
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BU of 5xlu by Molmil
High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin
Descriptor: (2S)-AMINO[(5S)-3-CHLORO-4,5-DIHYDROISOXAZOL-5-YL]ACETIC ACID, CALCIUM ION, GLYCEROL, ...
Authors:Kumari, S, Goel, M, Gupta, R, Pal, R.
Deposit date:2017-05-11
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin
To Be Published
5Y8X
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Crystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with Azaserine
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
Authors:Kumari, S, Goel, M, Pal, R, Gupta, R.
Deposit date:2017-08-21
Release date:2018-10-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with Azaserine
To Be Published
5ZDI
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BU of 5zdi by Molmil
Crystal structure of CsaA chaperone protein from picrophilus torridus
Descriptor: GLYCEROL, Protein secretion chaperonin CsaA
Authors:Kumari, S, Sharma, A, Goel, M.
Deposit date:2018-02-23
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of CsaA chaperone protein from picrophilus torridus
To Be Published
8I7E
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BU of 8i7e by Molmil
Crystal structure of Glyceraldehyde 3-phosphate dehydrogenase from Salmonella typhi at 2.05A
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Kumar, N, Dilawari, R, Chaubey, G.K, Modanwal, R, Talukdar, S, Dhiman, A, Chaudhary, S, Patidar, A, Kumar, A, Raje, C.I, Raje, M, Kumaran, S.
Deposit date:2023-01-31
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of Glyceraldehyde 3-phosphate dehydrogenase from Salmonella typhi at 2.05A
To Be Published
3E9K
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BU of 3e9k by Molmil
Crystal structure of Homo sapiens kynureninase-3-hydroxyhippuric acid inhibitor complex
Descriptor: 3-Hydroxyhippuric acid, Kynureninase, PYRIDOXAL-5'-PHOSPHATE
Authors:Lima, S, Kumar, S, Gawandi, V, Momany, C, Phillips, R.S.
Deposit date:2008-08-22
Release date:2008-12-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the Homo sapiens kynureninase-3-hydroxyhippuric acid inhibitor complex: insights into the molecular basis of kynureninase substrate specificity.
J.Med.Chem., 52, 2009
4LQ6
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BU of 4lq6 by Molmil
Crystal structure of Rv3717 reveals a novel amidase from M. tuberculosis
Descriptor: CHLORIDE ION, N-acetymuramyl-L-alanine amidase-related protein, PLATINUM (II) ION, ...
Authors:Kumar, A, Kumar, S, Kumar, D, Mishra, A, Dewangan, R.P, Shrivastava, P, Ramachandran, S, Taneja, B.
Deposit date:2013-07-17
Release date:2013-12-04
Last modified:2014-01-15
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis.
Acta Crystallogr.,Sect.D, 69, 2013
7X7N
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BU of 7x7n by Molmil
3D model of the 3-RBD up single trimeric spike protein of SARS-CoV2 in the presence of synthetic peptide SIH-5.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, Synthetic peptide SIH-5
Authors:Khatri, B, Pramanick, I, Malladi, S.K, Rajmani, R.S, Kumar, S, Ghosh, P, Sengupta, N, Rahisuddin, R, Kumaran, S, Ringe, R.P, Varadarajan, R, Dutta, S, Chatterjee, J.
Deposit date:2022-03-10
Release date:2022-04-27
Last modified:2022-11-16
Method:ELECTRON MICROSCOPY (4.47 Å)
Cite:A dimeric proteomimetic prevents SARS-CoV-2 infection by dimerizing the spike protein.
Nat.Chem.Biol., 18, 2022
1BJF
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BU of 1bjf by Molmil
CRYSTAL STRUCTURE OF RECOMBINANT BOVINE NEUROCALCIN DELTA AT 2.4 ANGSTROMS
Descriptor: CALCIUM ION, NEUROCALCIN DELTA
Authors:Vijay-Kumar, S, Kumar, V.D.
Deposit date:1998-06-25
Release date:1999-07-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of recombinant bovine neurocalcin.
Nat.Struct.Biol., 6, 1999
1UBQ
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STRUCTURE OF UBIQUITIN REFINED AT 1.8 ANGSTROMS RESOLUTION
Descriptor: UBIQUITIN
Authors:Vijay-Kumar, S, Bugg, C.E, Cook, W.J.
Deposit date:1987-01-02
Release date:1987-04-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of ubiquitin refined at 1.8 A resolution.
J.Mol.Biol., 194, 1987
1HIG
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BU of 1hig by Molmil
THREE-DIMENSIONAL STRUCTURE OF RECOMBINANT HUMAN INTERFERON-GAMMA.
Descriptor: INTERFERON-GAMMA
Authors:Ealick, S.E, Cook, W.J, Vijay-Kumar, S, Carson, M, Nagabhushan, T.L, Trotta, P.P, Bugg, C.E.
Deposit date:1991-10-03
Release date:1992-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Three-dimensional structure of recombinant human interferon-gamma.
Science, 252, 1991
3BM5
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BU of 3bm5 by Molmil
Crystal structure of O-acetyl-serine sulfhydrylase from Entamoeba histolytica in complex with cysteine
Descriptor: CYSTEINE, Cysteine synthase, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Krishna, C, Kumar, M, Kumar, S, Gourinath, S.
Deposit date:2007-12-12
Release date:2008-04-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of native O-acetyl-serine sulfhydrylase from Entamoeba histolytica and its complex with cysteine: structural evidence for cysteine binding and lack of interactions with serine acetyl transferase.
Proteins, 72, 2008
3OIH
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BU of 3oih by Molmil
Crystal Structure of the complex of xylanase-alpha-amylase inhibitor Protein (XAIP-I) with trehalose at 1.87 A resolution
Descriptor: ACETATE ION, Haementhin, PHOSPHATE ION, ...
Authors:Kumar, M, Kumar, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2010-08-19
Release date:2010-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal Structure of the complex of xylanase-alpha-amylase inhibitor Protein (XAIP-I) with trehalose at 1.87 A resolution
To be Published
3FG5
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Crystal structure determination of a ternary complex of phospholipase A2 with a pentapeptide FLSYK and Ajmaline at 2.5 A resolution
Descriptor: AJMALINE, Group II Phospholipase A2, pentapeptide FLSYK
Authors:Kumar, M, Kumar, S, Vikram, G, Singh, N, Sinha, M, Bhushan, A, Kaur, P, Srinivasan, A, Sharma, S, Singh, T.P.
Deposit date:2008-12-05
Release date:2008-12-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure determination of a ternary complex of phospholipase A2 with a pentapeptide FLSYK and Ajmaline at 2.5 A resolution
To be Published
3S8H
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BU of 3s8h by Molmil
Structure of dihydrodipicolinate synthase complexed with 3-Hydroxypropanoic acid(HPA)at 2.70 A resolution
Descriptor: 3-HYDROXY-PROPANOIC ACID, Dihydrodipicolinate synthase
Authors:Kumar, M, Kaur, N, Kumar, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2011-05-28
Release date:2011-06-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of dihydrodipicolinate synthase complexed with 3-Hydroxypropanoic acid(HPA)at 2.70 A resolution
TO BE PUBLISHED
3PUO
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Crystal structure of dihydrodipicolinate synthase from Pseudomonas aeruginosa(PsDHDPS)complexed with L-lysine at 2.65A resolution
Descriptor: Dihydrodipicolinate synthase, GLYCEROL, LYSINE
Authors:Kaur, N, Kumar, M, Kumar, S, Gautam, A, Sinha, M, Kaur, P, Sharma, S, Sharma, R, Tewari, R, Singh, T.P.
Deposit date:2010-12-06
Release date:2010-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Biochemical studies and crystal structure determination of dihydrodipicolinate synthase from Pseudomonas aeruginosa
Int.J.Biol.Macromol., 48, 2011
8IYO
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BU of 8iyo by Molmil
Crystal structure of a protein acetyltransferase, HP0935, acetyl-CoA bound form
Descriptor: ACETYL COENZYME *A, N-acetyltransferase domain-containing protein
Authors:Dadireddy, V, Mahanta, P, Kumar, A, Desirazu, R.N, Ramakumar, S.
Deposit date:2023-04-05
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of a protein acetyltransferase, HP0935, acetyl-CoA bound form
To be published

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