1Y7O
 
 | | The structure of Streptococcus pneumoniae A153P ClpP | | Descriptor: | ATP-dependent Clp protease proteolytic subunit, CALCIUM ION | | Authors: | Kimber, M.S, Gribun, A, Ching, R, Sprangers, R, Fiebig, K.M, Houry, W.A. | | Deposit date: | 2004-12-09 | | Release date: | 2005-02-08 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (2.51 Å) | | Cite: | The ClpP double ring tetradecameric protease exhibits plastic ring-ring interactions, and the N termini of its subunits form flexible loops that are essential for ClpXP and ClpAP complex formation.
J.Biol.Chem., 280, 2005
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1F1W
 | | SRC SH2 THREF1TRP MUTANT COMPLEXED WITH THE PHOSPHOPEPTIDE S(PTR)VNVQN | | Descriptor: | PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC, S(PTR)VNVQN PHOSPHOPEPTIDE | | Authors: | Kimber, M.S, Nachman, J, Cunningham, A.M, Gish, G.D, Pawson, T, Pai, E.F. | | Deposit date: | 2000-05-20 | | Release date: | 2000-07-06 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural basis for specificity switching of the Src SH2 domain.
Mol.Cell, 5, 2000
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3GWL
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3GWN
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2MNG
 | | Apo Structure of human HCN4 CNBD solved by NMR | | Descriptor: | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | | Authors: | Akimoto, M, Zhang, Z, Boulton, S, Selvaratnam, R, VanSchouwen, B, Gloyd, M, Accili, E.A, Lange, O.F, Melacini, G. | | Deposit date: | 2014-04-03 | | Release date: | 2014-06-04 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | A mechanism for the auto-inhibition of hyperpolarization-activated cyclic nucleotide-gated (HCN) channel opening and its relief by cAMP.
J.Biol.Chem., 289, 2014
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3QZY
 | | Structure of Baculovirus Sulfhydryl Oxidase Ac92 | | Descriptor: | Baculovirus sulfhydryl oxidase Ac92, FLAVIN-ADENINE DINUCLEOTIDE, IMIDAZOLE, ... | | Authors: | Hakim, M, Fass, D. | | Deposit date: | 2011-03-07 | | Release date: | 2012-02-15 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.14 Å) | | Cite: | Structure of a baculovirus sulfhydryl oxidase, a highly divergent member of the erv flavoenzyme family.
J.Virol., 85, 2011
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3P0K
 | | Structure of Baculovirus Sulfhydryl Oxidase Ac92 | | Descriptor: | ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, IMIDAZOLE, ... | | Authors: | Hakim, M, Fass, D. | | Deposit date: | 2010-09-29 | | Release date: | 2011-12-07 | | Method: | X-RAY DIFFRACTION (1.47 Å) | | Cite: | Structure of a baculovirus sulfhydryl oxidase, a highly divergent member of the erv flavoenzyme family.
J.Virol., 85, 2011
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1IHJ
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3SSS
 | | CcmK1 with residues 103-113 deleted | | Descriptor: | CHLORIDE ION, Carbon dioxide concentrating mechanism protein | | Authors: | Kimber, M.S, Samborska, B. | | Deposit date: | 2011-07-08 | | Release date: | 2012-07-11 | | Last modified: | 2023-09-13 | | Method: | X-RAY DIFFRACTION (2.05 Å) | | Cite: | A CcmK2 double layer is the dominant architectural feature of the beta-carboxysomal shell facet
Structure, 2012
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3SSR
 | | CcmK2 dodecamer - form 2 | | Descriptor: | Carbon dioxide concentrating mechanism protein, SULFATE ION | | Authors: | Kimber, M.S, Samborska, B. | | Deposit date: | 2011-07-08 | | Release date: | 2012-07-11 | | Last modified: | 2023-09-13 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | A CcmK2 double layer is the dominant architectural feature of the beta-carboxysomal shell facet
Structure, 2012
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3TD7
 | | Crysal structure of the mimivirus sulfhydryl oxidase R596 | | Descriptor: | FAD-linked sulfhydryl oxidase R596, FLAVIN-ADENINE DINUCLEOTIDE | | Authors: | Hakim, M, Fass, D. | | Deposit date: | 2011-08-10 | | Release date: | 2012-09-05 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2.21 Å) | | Cite: | Exploring ORFan domains in giant viruses: structure of mimivirus sulfhydryl oxidase R596.
Plos One, 7, 2012
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7P80
 | | Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compressed state) | | Descriptor: | ADEP2, ATP-dependent Clp protease proteolytic subunit | | Authors: | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-06-29 | | Last modified: | 2024-01-31 | | Method: | X-RAY DIFFRACTION (2.98 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7P81
 | | Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compact state) | | Descriptor: | ADEP2, ATP-dependent Clp protease proteolytic subunit | | Authors: | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-06-29 | | Last modified: | 2024-01-31 | | Method: | X-RAY DIFFRACTION (2.79 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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9IKC
 | | Orf virus scaffolding protein Orfv075 | | Descriptor: | 62 kDa protein | | Authors: | Hyun, J, Kim, S, Ko, S, Kim, M, Jang, Y. | | Deposit date: | 2024-06-27 | | Release date: | 2024-08-07 | | Method: | ELECTRON MICROSCOPY (1.9 Å) | | Cite: | Cryo-EM structure of orf virus scaffolding protein orfv075.
Biochem.Biophys.Res.Commun., 728, 2024
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8YA8
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7XLJ
 | | The crystal structure of ORE1(ANAC092) NAC domain | | Descriptor: | NAC domain-containing protein 92 | | Authors: | Chun, I.S, Kim, M.S. | | Deposit date: | 2022-04-21 | | Release date: | 2023-03-29 | | Last modified: | 2023-09-06 | | Method: | X-RAY DIFFRACTION (2.45 Å) | | Cite: | Structural basis of DNA binding by the NAC transcription factor ORE1, a master regulator of plant senescence.
Plant Commun., 4, 2023
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8K9Z
 | | Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-bound calmodulin | | Descriptor: | CALCIUM ION, Calmodulin-2, RDTND-RID CBD | | Authors: | Lee, Y, Choi, S, Hwang, J, Kim, M.H. | | Deposit date: | 2023-08-02 | | Release date: | 2024-07-10 | | Last modified: | 2024-08-07 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet.
Nat Commun, 15, 2024
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8KA1
 | | Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-free calmodulin | | Descriptor: | Calmodulin-2, MAGNESIUM ION, RDTND-RID CBD | | Authors: | Lee, Y, Choi, S, Hwang, J, Kim, M.H. | | Deposit date: | 2023-08-02 | | Release date: | 2024-07-10 | | Last modified: | 2024-08-07 | | Method: | X-RAY DIFFRACTION (2.82 Å) | | Cite: | Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet.
Nat Commun, 15, 2024
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8KA0
 | | Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-bound calmodulin and a nicotinamide adenine dinucleotide (NAD+) | | Descriptor: | CALCIUM ION, Calmodulin-2, GLYCEROL, ... | | Authors: | Lee, Y, Choi, S, Hwang, J, Kim, M.H. | | Deposit date: | 2023-08-02 | | Release date: | 2024-07-10 | | Last modified: | 2024-08-07 | | Method: | X-RAY DIFFRACTION (2.35 Å) | | Cite: | Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet.
Nat Commun, 15, 2024
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8KA2
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2PV6
 | | HIV-1 gp41 Membrane Proximal Ectodomain Region peptide in DPC micelle | | Descriptor: | Envelope glycoprotein | | Authors: | Sun, Z.-Y.J, Oh, K.J, Kim, M, Reinherz, E.L, Wagner, G. | | Deposit date: | 2007-05-09 | | Release date: | 2008-03-18 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | HIV-1 broadly neutralizing antibody extracts its epitope from a kinked gp41 ectodomain region on the viral membrane
Immunity, 28, 2008
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2QOJ
 | | Coevolution of a homing endonuclease and its host target sequence | | Descriptor: | I-AniI DNA target seq1, I-AniI DNA target seq2, LAGLIDADG endonuclease, ... | | Authors: | Scalley-Kim, M, McConnell Smith, A, Stoddard, B.L. | | Deposit date: | 2007-07-20 | | Release date: | 2008-11-11 | | Last modified: | 2021-10-20 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Coevolution of a homing endonuclease and its host target sequence.
J.Mol.Biol., 372, 2007
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8ISO
 | | Crystal structure of extended-spectrum class A beta-lactamase, CESS-1 | | Descriptor: | 1,2-ETHANEDIOL, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, Beta-lactamase | | Authors: | Jeong, B.G, Kim, M.Y, Jeong, C.S, Do, H.W, Lee, J.H, Cha, S.S. | | Deposit date: | 2023-03-21 | | Release date: | 2024-05-15 | | Method: | X-RAY DIFFRACTION (1.29 Å) | | Cite: | Characterization of the extended substrate spectrum of the class A beta-lactamase CESS-1 from Stenotrophomonas sp. and structure-based investigation into its substrate preference.
Int J Antimicrob Agents, 63, 2024
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8ISP
 | | Crystal structure of extended-spectrum class A beta-lactamase, CESS-1 E166Q acylated by cephalexin | | Descriptor: | (R)-2-((R)-((R)-2-amino-2-phenylacetamido)(carboxy)methyl)-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, Beta-lactamase | | Authors: | Jeong, B.G, Kim, M.Y, Jeong, C.S, Do, H.W, Lee, J.H, Cha, S.S. | | Deposit date: | 2023-03-21 | | Release date: | 2024-05-15 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.11 Å) | | Cite: | Characterization of the extended substrate spectrum of the class A beta-lactamase CESS-1 from Stenotrophomonas sp. and structure-based investigation into its substrate preference.
Int J Antimicrob Agents, 63, 2024
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8ISQ
 | | Crystal structure of extended-spectrum class A beta-lactamase, CESS-1 E166Q acylated by ampicillin | | Descriptor: | (2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-lactamase, ... | | Authors: | Jeong, B.G, Kim, M.Y, Jeong, C.S, Do, H.W, Lee, J.H, Cha, S.S. | | Deposit date: | 2023-03-21 | | Release date: | 2024-05-15 | | Method: | X-RAY DIFFRACTION (2.24 Å) | | Cite: | Characterization of the extended substrate spectrum of the class A beta-lactamase CESS-1 from Stenotrophomonas sp. and structure-based investigation into its substrate preference.
Int J Antimicrob Agents, 63, 2024
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