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PDB: 244 results

9JO3
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Cryo-EM structure of human BKca channel-compound 10b complex
Descriptor: 5-azanyl-2-[2,3,5,6-tetrakis(fluoranyl)-4-(trifluoromethyl)phenoxy]phenol, CALCIUM ION, CHOLESTEROL HEMISUCCINATE, ...
Authors:Kim, S, Park, S, Lee, N.Y, Lee, E.Y, Lee, N, Roh, E.C, Kim, Y.G, Kim, H.J, Jin, M.S, Park, C.S, Kim, Y.C.
Deposit date:2024-09-24
Release date:2025-02-26
Last modified:2025-03-12
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Discovery of Diphenyl Ether Derivatives as Novel BK Ca Channel Activators: Structure-Activity Relationship, Cryo-EM Complex Structures, and In Vivo Animal Studies.
J.Med.Chem., 68, 2025
9JO4
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Cryo-EM structure of human BKca channel-compound 51b complex
Descriptor: 5-(5-morpholin-4-ylpentylamino)-2-[2,3,5,6-tetrakis(fluoranyl)-4-(trifluoromethyl)phenoxy]phenol, CALCIUM ION, CHOLESTEROL HEMISUCCINATE, ...
Authors:Kim, S, Park, S, Lee, N.Y, Lee, E.Y, Lee, N, Roh, E.C, Kim, Y.G, Kim, H.J, Jin, M.S, Park, C.S, Kim, Y.C.
Deposit date:2024-09-24
Release date:2025-02-26
Last modified:2025-03-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Discovery of Diphenyl Ether Derivatives as Novel BK Ca Channel Activators: Structure-Activity Relationship, Cryo-EM Complex Structures, and In Vivo Animal Studies.
J.Med.Chem., 68, 2025
9JYW
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Crystal structure of the gamma-carbonic anhydrase from the polyextremophilic bacterium Aeribacillus pallidus
Descriptor: Gamma carbonic anhydrase family protein, SULFATE ION, ZINC ION
Authors:Choi, S.H, Jin, M.S.
Deposit date:2024-10-13
Release date:2024-12-11
Last modified:2025-01-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of gamma-carbonic anhydrase from the polyextremophilic bacterium Aeribacillus pallidus.
Mol.Cells, 48, 2024
6K65
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BU of 6k65 by Molmil
Application of anti-helix antibodies in protein structure determination (9014-1P4B)
Descriptor: 1P4B variable heavy chain, 1P4B variable light chain, Immunoglobulin G-binding protein A
Authors:Lee, J.O, Jin, M.S, Kim, J.W, Kim, S, Lee, H, Cho, G.Y.
Deposit date:2019-06-01
Release date:2019-08-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Application of antihelix antibodies in protein structure determination.
Proc.Natl.Acad.Sci.USA, 116, 2019
6K6B
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Application of anti-helix antibodies in protein structure determination (8496-3LRH)
Descriptor: 3LRH intrabody, Protein A
Authors:Lee, J.O, Jin, M.S, Kim, J.W, Kim, S, Lee, H, Cho, G.Y.
Deposit date:2019-06-02
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Application of antihelix antibodies in protein structure determination.
Proc.Natl.Acad.Sci.USA, 116, 2019
6K3M
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BU of 6k3m by Molmil
Application of anti-helix antibodies in protein structure determination (8189-3LRH)
Descriptor: 3LRH intrabody, SpA IgG-binding domain protein,Protein A
Authors:Lee, J.O, Jin, M.S, Kim, J.W, Kim, S, Lee, H, Cho, G.Y.
Deposit date:2019-05-20
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Application of antihelix antibodies in protein structure determination.
Proc.Natl.Acad.Sci.USA, 116, 2019
6K67
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BU of 6k67 by Molmil
Application of anti-helix antibodies in protein structure determination (9011-3LRH)
Descriptor: 3LRH introbody, CALCIUM ION, Engineered calmodulin
Authors:Lee, J.O, Jin, M.S, Kim, J.W, Kim, S, Lee, H, Cho, G.Y.
Deposit date:2019-06-01
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Application of antihelix antibodies in protein structure determination.
Proc.Natl.Acad.Sci.USA, 116, 2019
3A7C
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BU of 3a7c by Molmil
Crystal structure of TLR2-PE-DTPA complex
Descriptor: (10S,13R)-3-{2-[{2-[bis(carboxymethyl)amino]ethyl}(carboxymethyl)amino]ethyl}-10-hydroxy-5,16-dioxo-13-(tetradecanoyloxy)-9,11,15-trioxa-3,6-diaza-10-phosphanonacosan-1-oic acid 10-oxide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kang, J.Y, Jin, M.S, Lee, J.-O.
Deposit date:2009-09-20
Release date:2009-11-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer
Immunity, 31, 2009
3A79
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Crystal structure of TLR2-TLR6-Pam2CSK4 complex
Descriptor: (2S)-propane-1,2-diyl dihexadecanoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kang, J.Y, Jin, M.S, Lee, J.-O.
Deposit date:2009-09-20
Release date:2009-11-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer
Immunity, 31, 2009
3A7B
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BU of 3a7b by Molmil
Crystal structure of TLR2-Streptococcus Pneumoniae lipoteichoic acid complex
Descriptor: (2S)-1-({3-O-[2-(acetylamino)-4-amino-2,4,6-trideoxy-beta-D-galactopyranosyl]-alpha-D-glucopyranosyl}oxy)-3-(heptanoyloxy)propan-2-yl (7Z)-pentadec-7-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kang, J.Y, Jin, M.S, Lee, J.-O.
Deposit date:2009-09-20
Release date:2009-11-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer
Immunity, 31, 2009
2Z81
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Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide
Descriptor: (2R)-3-{[(2S)-3-HYDROXY-2-(PALMITOYLAMINO)PROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, Toll-like receptor 2, ...
Authors:Lee, J.O, Jin, M.S, Kim, S.E, Heo, J.Y.
Deposit date:2007-08-30
Release date:2007-10-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the TLR1-TLR2 Heterodimer Induced by Binding of a Tri-Acylated Lipopeptide
Cell(Cambridge,Mass.), 130, 2007
2Z7X
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Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide
Descriptor: (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITIC ACID, ...
Authors:Lee, J.O, Jin, M.S, Kim, S.E, Heo, J.Y.
Deposit date:2007-08-29
Release date:2007-10-02
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of the TLR1-TLR2 Heterodimer Induced by Binding of a Tri-Acylated Lipopeptide
Cell(Cambridge,Mass.), 130, 2007
2Z80
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BU of 2z80 by Molmil
Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Toll-like receptor 2, Variable lymphocyte receptor B
Authors:Lee, J.O, Jin, M.S, Kim, S.E, Heo, J.Y.
Deposit date:2007-08-30
Release date:2007-09-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the TLR1-TLR2 Heterodimer Induced by Binding of a Tri-Acylated Lipopeptide
Cell(Cambridge,Mass.), 130, 2007
5JDB
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BU of 5jdb by Molmil
Binding specificity of P[8] VP8* proteins of rotavirus vaccine strains with histo-blood group antigens
Descriptor: Outer capsid protein VP4
Authors:Sun, X, Guo, N, Li, D, Zhou, Y, Jin, M, Xie, G, Pang, L, Zhang, Q, Cao, Y, Duan, Z.
Deposit date:2016-04-16
Release date:2016-07-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Binding specificity of P[8] VP8* proteins of rotavirus vaccine strains with histo-blood group antigens.
Virology, 495, 2016
9LSK
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BU of 9lsk by Molmil
Cryo-EM structure of the Klebsiella pneumoniae CitS (citrate-bound occluded state)
Descriptor: CITRIC ACID, Citrate/sodium symporter, PALMITIC ACID
Authors:Kim, S, Kim, J.W, Park, J.G, Lee, S.S, Choi, S.H, Lee, J.-O, Jin, M.S.
Deposit date:2025-02-04
Release date:2025-03-12
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Disulfide-stabilized diabodies enable near-atomic cryo-EM imaging of small proteins: A case study of the bacterial Na+/citrate symporter CitS
To Be Published
9LSJ
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BU of 9lsj by Molmil
Cryo-EM structure of the G15C-R66C and T83C-T83C diabody complex (CitS-diabody #7-TLR3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, ...
Authors:Kim, S, Kim, J.W, Park, J.G, Lee, S.S, Choi, S.H, Lee, J.-O, Jin, M.S.
Deposit date:2025-02-04
Release date:2025-03-12
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Disulfide-stabilized diabodies enable near-atomic cryo-EM imaging of small proteins: A case study of the bacterial Na+/citrate symporter CitS
To Be Published
9LSI
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BU of 9lsi by Molmil
Cryo-EM structure of the S82C-S82C diabody complex (CitS-diabody #2-TLR3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kim, S, Kim, J.W, Park, J.G, Lee, S.S, Choi, S.H, Lee, J.-O, Jin, M.S.
Deposit date:2025-02-04
Release date:2025-03-12
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Disulfide-stabilized diabodies enable near-atomic cryo-EM imaging of small proteins: A case study of the bacterial Na+/citrate symporter CitS
To Be Published
9LSH
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BU of 9lsh by Molmil
Cryo-EM structure of the wild-type diabody complex (CitS-diabody #1-TLR3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kim, S, Kim, J.W, Park, J.G, Lee, S.S, Choi, S.H, Lee, J.-O, Jin, M.S.
Deposit date:2025-02-04
Release date:2025-03-12
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Disulfide-stabilized diabodies enable near-atomic cryo-EM imaging of small proteins: A case study of the bacterial Na+/citrate symporter CitS
To Be Published
5H1L
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BU of 5h1l by Molmil
Crystal structure of WD40 repeat domains of Gemin5 in complex with 7-nt U4 snRNA fragment
Descriptor: GLYCEROL, Gem-associated protein 5, U4 snRNA (5'-R(*AP*UP*UP*UP*UP*UP*G)-3')
Authors:Jin, W, Wang, Y, Liu, C.P, Yang, N, Jin, M, Cong, Y, Wang, M, Xu, R.M.
Deposit date:2016-10-10
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for snRNA recognition by the double-WD40 repeat domain of Gemin5
Genes Dev., 30, 2016
5H1M
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BU of 5h1m by Molmil
Crystal structure of WD40 repeat domains of Gemin5 in complex with M7G
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Gem-associated protein 5
Authors:Jin, W, Wang, Y, Liu, C.P, Yang, N, Jin, M, Cong, Y, Wang, M, Xu, R.M.
Deposit date:2016-10-10
Release date:2016-11-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.492 Å)
Cite:Structural basis for snRNA recognition by the double-WD40 repeat domain of Gemin5
Genes Dev., 30, 2016
5H1K
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BU of 5h1k by Molmil
Crystal structure of WD40 repeat domains of Gemin5 in complex with 13-nt U4 snRNA fragment
Descriptor: Gem-associated protein 5, U4 snRNA (5'-R(*GP*CP*AP*AP*UP*UP*UP*UP*UP*GP*AP*CP*A)-3')
Authors:Wang, Y, Jin, W, Liu, C.P, Yang, N, Jin, M, Cong, Y, Wang, M, Xu, R.M.
Deposit date:2016-10-10
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for snRNA recognition by the double-WD40 repeat domain of Gemin5
Genes Dev., 30, 2016
7DNZ
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BU of 7dnz by Molmil
Cryo-EM structure of the human ABCB6 (Hemin and GSH-bound)
Descriptor: ATP-binding cassette sub-family B member 6, mitochondrial, CHOLESTEROL HEMISUCCINATE, ...
Authors:Kim, S, Lee, S.S, Park, J.G, Kim, J.W, Kim, S, Kim, N.J, Hong, S, Kang, J.Y, Jin, M.S.
Deposit date:2020-12-11
Release date:2022-06-22
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Insights into Porphyrin Recognition by the Human ATP-Binding Cassette Transporter ABCB6.
Mol.Cells, 45, 2022
5TSP
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BU of 5tsp by Molmil
Crystal structure of the catalytic domain of Clostridium perfringens neuraminidase (NanI) in complex with a CHES
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Sialidase
Authors:Lee, Y, Youn, H.-S, Lee, J.-G, An, J.Y, Park, K.R, Kang, J.Y, Jin, M.S, Ryu, Y.B, Park, K.H, Eom, S.H.
Deposit date:2016-10-31
Release date:2017-03-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Crystal structure of the catalytic domain of Clostridium perfringens neuraminidase in complex with a non-carbohydrate-based inhibitor, 2-(cyclohexylamino)ethanesulfonic acid
Biochem. Biophys. Res. Commun., 486, 2017
5WCO
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BU of 5wco by Molmil
Matrix Protein (M1) of Infectious Salmon Anaemia Virus
Descriptor: NS2
Authors:Zhang, W, Zheng, W, Toh, Y, Betancourt, M.A, Tu, J, Fan, Y, Vakharia, V, Liu, J, McNew, J.A, Jin, M, Tao, Y.J.
Deposit date:2017-07-01
Release date:2017-08-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Crystal structure of an orthomyxovirus matrix protein reveals mechanisms for self-polymerization and membrane association.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8YR4
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BU of 8yr4 by Molmil
Cryo-EM structure of the human ABCB6 in complex with Cd(II):Phytochelatin 2
Descriptor: ATP-binding cassette sub-family B member 6, CADMIUM ION, Phytochelatin 2
Authors:Choi, S.H, Lee, S.S, Lee, H.Y, Kim, S, Kim, J.W, Jin, M.S.
Deposit date:2024-03-20
Release date:2024-06-19
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of cadmium-bound human ABCB6.
Commun Biol, 7, 2024

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