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PDB: 37 results
1B10
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BU of 1b10 by Molmil
SOLUTION NMR STRUCTURE OF RECOMBINANT SYRIAN HAMSTER PRION PROTEIN RPRP(90-231) , 25 STRUCTURES
Descriptor: PROTEIN (PRION PROTEIN)
Authors:James, T.L, Liu, H, Ulyanov, N.B, Farr-Jones, S.
Deposit date:1998-11-25
Release date:1998-12-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of a 142-residue recombinant prion protein corresponding to the infectious fragment of the scrapie isoform.
Proc.Natl.Acad.Sci.USA, 94, 1997
3PT2
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BU of 3pt2 by Molmil
Structure of a viral OTU domain protease bound to Ubiquitin
Descriptor: 1.7.6 3-bromanylpropan-1-amine, ACETATE ION, RNA polymerase, ...
Authors:James, T.W, Bacik, J.P, Frias-Staheli, N, Garcia-Sastre, A, Mark, B.L.
Deposit date:2010-12-02
Release date:2011-01-19
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the removal of ubiquitin and interferon-stimulated gene 15 by a viral ovarian tumor domain-containing protease.
Proc.Natl.Acad.Sci.USA, 108, 2011
2P2R
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BU of 2p2r by Molmil
Crystal structure of the third KH domain of human Poly(C)-Binding Protein-2 in complex with C-rich strand of human telomeric DNA
Descriptor: 6-AMINOPYRIMIDIN-2(1H)-ONE, C-rich strand of human telomeric DNA, Poly(rC)-binding protein 2
Authors:James, T.L, Stroud, R.M, Du, Z, Fenn, S, Tjhen, R, Lee, J.K.
Deposit date:2007-03-07
Release date:2007-06-12
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the third KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.6 A resolution.
Nucleic Acids Res., 35, 2007
2PQU
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BU of 2pqu by Molmil
Crystal structure of KH1 domain of human PCBP2 complexed to single-stranded 12-mer telomeric dna
Descriptor: 12-mer C-rich strand of human telomeric DNA, Poly(rC)-binding protein 2
Authors:James, T.L, Lee, J.
Deposit date:2007-05-02
Release date:2007-06-12
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2.
Rna, 13, 2007
2PY9
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BU of 2py9 by Molmil
Protein-RNA Interaction involving KH1 domain from Human Poly(C)-Binding Protein-2
Descriptor: 12-mer C-rich strand of human telomeric RNA, Poly(rC)-binding protein 2
Authors:James, T.L, Du, Z, Lee, J.K.
Deposit date:2007-05-15
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2.
Rna, 13, 2007
3C4B
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BU of 3c4b by Molmil
Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer
Descriptor: Endoribonuclease Dicer
Authors:Lee, J.K, Du, Z, Tjhen, R.J, Stroud, R.M, James, T.L.
Deposit date:2008-01-29
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3C4T
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BU of 3c4t by Molmil
Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer
Descriptor: CADMIUM ION, Endoribonuclease Dicer
Authors:Lee, J.K, Du, Z, Tjhen, R.J, Stroud, R.M, James, T.L.
Deposit date:2008-01-30
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage.
Proc.Natl.Acad.Sci.Usa, 105, 2008
1LVJ
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BU of 1lvj by Molmil
STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING
Descriptor: 1-[10-(3-DIMETHYLAMINO-PROPYL)-10H-PHENOTHIAZIN-2-YL]-ETHANONE, HIV-1 Trans Activating Region RNA
Authors:Du, Z, Lind, K.E, James, T.L.
Deposit date:2002-05-28
Release date:2002-12-11
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening
CHEM.BIOL., 9, 2002
140D
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BU of 140d by Molmil
SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA
Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3')
Authors:Mujeeb, A, Kerwin, S.M, Kenyon, G.L, James, T.L.
Deposit date:1993-09-24
Release date:1994-04-30
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra.
Biochemistry, 32, 1993
142D
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BU of 142d by Molmil
SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA
Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3')
Authors:Mujeeb, A, James, T.L.
Deposit date:1993-09-24
Release date:1994-04-30
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra.
Biochemistry, 32, 1993
141D
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BU of 141d by Molmil
SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA
Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3')
Authors:Mujeeb, A, James, T.L.
Deposit date:1993-09-24
Release date:1994-04-30
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra.
Biochemistry, 32, 1993
1BAU
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BU of 1bau by Molmil
NMR STRUCTURE OF THE DIMER INITIATION COMPLEX OF HIV-1 GENOMIC RNA, MINIMIZED AVERAGE STRUCTURE
Descriptor: SL1 RNA DIMER
Authors:Mujeeb, A, Clever, J.L, Billeci, T.M, James, T.L, Parslow, T.G.
Deposit date:1998-04-18
Release date:1999-04-27
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the dimer initiation complex of HIV-1 genomic RNA.
Nat.Struct.Biol., 5, 1998
4IUM
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BU of 4ium by Molmil
Equine arteritis virus papain-like protease 2 (PLP2) covalently bound to ubiquitin
Descriptor: GLYCEROL, Ubiquitin, ZINC ION, ...
Authors:Bailey-Elkin, B.A, James, T.W, Mark, B.L.
Deposit date:2013-01-21
Release date:2013-02-13
Last modified:2013-03-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Deubiquitinase function of arterivirus papain-like protease 2 suppresses the innate immune response in infected host cells.
Proc.Natl.Acad.Sci.USA, 110, 2013
219D
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BU of 219d by Molmil
DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, James, T.L.
Deposit date:1995-07-25
Release date:1995-10-15
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints.
Biochemistry, 34, 1995
3PSE
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BU of 3pse by Molmil
Structure of a viral OTU domain protease bound to interferon-stimulated gene 15 (ISG15)
Descriptor: 1.7.6 3-bromanylpropan-1-amine, GLYCEROL, RNA polymerase, ...
Authors:Bacik, J.P, James, T.W, Frias-Staheli, N, Garcia-Sastre, A, Mark, B.L.
Deposit date:2010-12-01
Release date:2011-01-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the removal of ubiquitin and interferon-stimulated gene 15 by a viral ovarian tumor domain-containing protease.
Proc.Natl.Acad.Sci.USA, 108, 2011
2GM0
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BU of 2gm0 by Molmil
Linear dimer of stemloop SL1 from HIV-1
Descriptor: RNA (35-MER)
Authors:Ulyanov, N.B, Mujeeb, A, Du, Z, Tonelli, M, Parslow, T.G, James, T.L.
Deposit date:2006-04-05
Release date:2006-04-25
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:NMR Structure of the Full-length Linear Dimer of Stem-Loop-1 RNA in the HIV-1 Dimer Initiation Site.
J.Biol.Chem., 281, 2006
1R7Z
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BU of 1r7z by Molmil
NMR STRUCTURE OF THE R(GGAGGACAUUCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUUCCU BULGE
Descriptor: 34-MER
Authors:Du, Z, Ulyanov, N.B, Yu, J, James, T.L.
Deposit date:2003-10-22
Release date:2004-05-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR Structures of Loop B RNAs from the Stem-Loop IV Domain of the Enterovirus Internal Ribosome Entry Site: A Single C to U Substitution Drastically Changes the Shape and Flexibility of RNA(,).
Biochemistry, 43, 2004
1R7W
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BU of 1r7w by Molmil
NMR STRUCTURE OF THE R(GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUCCCU BULGE
Descriptor: 34-MER
Authors:Du, Z, Ulyanov, N.B, Yu, J, James, T.L.
Deposit date:2003-10-22
Release date:2004-05-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR Structures of Loop B RNAs from the Stem-Loop IV Domain of the Enterovirus Internal Ribosome Entry Site: A Single C to U Substitution Drastically Changes the Shape and Flexibility of RNA(,).
Biochemistry, 43, 2004
2AXY
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BU of 2axy by Molmil
Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA
Descriptor: C-rich strand of human telomeric dna, Poly(rC)-binding protein 2
Authors:Du, Z, Lee, J.K, Tjhen, R.J, Li, S, Stroud, R.M, James, T.L.
Deposit date:2005-09-06
Release date:2005-09-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the First KH Domain of Human Poly(C)-binding Protein-2 in Complex with a C-rich Strand of Human Telomeric DNA at 1.7 A
J.Biol.Chem., 280, 2005
1D42
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BU of 1d42 by Molmil
SOLUTION STRUCTURE OF [D(GTATATAC)]2 VIA RESTRAINED MOLECULAR DYNAMICS SIMULATIONS WITH NUCLEAR MAGNETIC RESONANCE CONSTRAINTS DERIVED FROM RELAXATION MATRIX ANALYSIS OF TWO-DIMENSIONAL NUCLEAR OVERHAUSER EFFECT EXPERIMENTS
Descriptor: DNA (5'-D(*GP*TP*AP*TP*AP*TP*AP*C)-3')
Authors:Schmitz, U, James, T.L.
Deposit date:1991-05-15
Release date:1993-04-15
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of [d(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear Overhauser effect experiments.
J.Mol.Biol., 221, 1991
2JZX
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BU of 2jzx by Molmil
PCBP2 KH1-KH2 domains
Descriptor: Poly(rC)-binding protein 2
Authors:Du, Z, Fenn, S, Tjhen, R, James, T.
Deposit date:2008-01-21
Release date:2008-08-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the first and second KH domains of human poly-C binding protein-2 reveals insights into its regulatory mechanisms
To be Published
1RSW
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BU of 1rsw by Molmil
12-mer from site II calbindin D9K (DKNGDGEVSFEE) coordination Pb(II)
Descriptor: Vitamin D-dependent calcium-binding protein, intestinal
Authors:Ferrari, R, Mendoza, G, James, T, Tonelli, M, Basus, V, Gasque, L.
Deposit date:2003-12-10
Release date:2005-07-26
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Coordination Compounds derived from a dodecapeptide and Pb2+, Cd2+ and Zn2+. Modeling the site II from the Calbindin D9K
To be published
1RSX
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BU of 1rsx by Molmil
12-mer from site II calbindin D9K (DKNGDGEVSFEE) coordinating Cd(II)
Descriptor: Vitamin D-dependent calcium-binding protein, intestinal
Authors:Ferrari, R, Mendoza, G, James, T, Tonelli, M, Basus, V, Gasque, L.
Deposit date:2003-12-10
Release date:2005-07-26
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Coordination Compounds derived from a dodecapeptide and Pb2+, Cd2+ and Zn2+. Modeling the site II from the Calbindin D9K
To be Published
1RT0
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BU of 1rt0 by Molmil
12-mer from site II calbindin D9K (DKNGDGEVSFEE) coordinating Zn(II)
Descriptor: Vitamin D-dependent calcium-binding protein, intestinal
Authors:Ferrari, R, Mendoza, G, James, T, Tonelli, M, Basus, V, Gasque, L.
Deposit date:2003-12-10
Release date:2005-07-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Coordination Compounds derived from a dodecapeptide and Pb2+, Cd2+ and Zn2+. Modeling the site II from the Calbindin D9K
To be Published
1ROQ
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BU of 1roq by Molmil
Extending the Family of UNCG-like Tetraloop Motifs: NMR Structure of a CACG Tetraloop from Coxsackievirus B3
Descriptor: 5'-R(*GP*GP*UP*AP*UP*CP*AP*CP*GP*GP*UP*AP*CP*C)-3'
Authors:Du, Z, Yu, J, Andino, R, James, T.L.
Deposit date:2003-12-02
Release date:2004-05-18
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Extending the Family of UNCG-like Tetraloop Motifs: NMR Structure of a CACG Tetraloop from Coxsackievirus B3
Biochemistry, 42, 2003

 

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