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PDB: 5628 results

6CXZ
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RNA octamer containing 2'-F, 4'-Calpha-Me U.
Descriptor: CACODYLATE ION, COBALT HEXAMMINE(III), RNA (5'-R(*CP*GP*AP*AP*(U4M)P*UP*CP*G)-3')
Authors:Harp, J.M, Egli, M.
Deposit date:2018-04-04
Release date:2018-08-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis for the synergy of 4'- and 2'-modifications on siRNA nuclease resistance, thermal stability and RNAi activity.
Nucleic Acids Res., 46, 2018
5UUP
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Human Bfl-1 covalently cross-linked to an electrophilic variant of a Bfl-1-specific selected peptide
Descriptor: Bcl-2-related protein A1, Bfl-1-specific selected peptide, SULFATE ION
Authors:Jenson, J.M, Grant, R.A, Keating, A.E.
Deposit date:2017-02-17
Release date:2017-06-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.726 Å)
Cite:Epistatic mutations in PUMA BH3 drive an alternate binding mode to potently and selectively inhibit anti-apoptotic Bfl-1.
Elife, 6, 2017
6CI4
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BU of 6ci4 by Molmil
Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis soaked with UDP-4-amino-4,6-dideoxy-L-AltNAc
Descriptor: (2R,3R,4S,5R,6S)-3-(acetylamino)-5-amino-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate, formyltransferase PseJ
Authors:Harb, I, Reimer, J.M, Schmeing, T.M.
Deposit date:2018-02-23
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.824068 Å)
Cite:Structural Insight into a Novel Formyltransferase and Evolution to a Nonribosomal Peptide Synthetase Tailoring Domain.
ACS Chem. Biol., 13, 2018
6CNH
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BU of 6cnh by Molmil
Human PRPF4B in complex with Rebastinib
Descriptor: 4-[4-({[3-tert-butyl-1-(quinolin-6-yl)-1H-pyrazol-5-yl]carbamoyl}amino)-3-fluorophenoxy]-N-methylpyridine-2-carboxamide, SULFATE ION, Serine/threonine-protein kinase PRP4 homolog
Authors:Godoi, P.H.C, Santiago, A.S, Ramos, P.Z, Fala, A.M, Salmazo, A.P.T, Counago, R.M, Righetto, G.L, Silva, P.N.B, Gileadi, O, Guimaraes, C.R.W, Massirer, K.B, Arruda, P, Elkins, J.M, Edwards, A.M, Structural Genomics Consortium (SGC)
Deposit date:2018-03-08
Release date:2018-03-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the human PRPF4B in complex with Rebastinib
To be Published
5KRD
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BU of 5krd by Molmil
Crystal structure of haliscomenobacter hydrossis iodotyrosine deiodinase (IYD) bound to FMN and 2-iodophenol (2IP)
Descriptor: 2-iodanylphenol, FLAVIN MONONUCLEOTIDE, Nitroreductase
Authors:Ingavat, N, Kavran, J.M, Sun, Z, Rokita, S.
Deposit date:2016-07-07
Release date:2017-02-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Active Site Binding Is Not Sufficient for Reductive Deiodination by Iodotyrosine Deiodinase.
Biochemistry, 56, 2017
5YAK
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BU of 5yak by Molmil
The crystal structure of human IYD Thr239 mutant with ligand 3-Fluorotyrosine (F-Tyr)
Descriptor: 3-FLUOROTYROSINE, FLAVIN MONONUCLEOTIDE, Iodotyrosine deiodinase 1
Authors:Hu, J.M, Rokita, S.E, Schlessman, J.
Deposit date:2017-09-01
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Redox control of iodotyrosine deiodinase
Protein Sci., 28, 2019
6CQH
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BU of 6cqh by Molmil
Crystal Structure of the Human vaccinia-related kinase bound to a N-propynyl-N-ethyl-dihydropteridine inhibitor
Descriptor: (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-8-ethyl-7-methyl-5-(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one, ACETATE ION, CHLORIDE ION, ...
Authors:dos Reis, C.V, de Souza, G.P, Counago, R.M, Azevedo, A, Guimaraes, C, Mascarello, A, Gama, F, Ferreira, M, Massirer, K.B, Arruda, P, Edwards, A.M, Elkins, J.M, Structural Genomics Consortium (SGC)
Deposit date:2018-03-15
Release date:2018-03-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structure of the Human vaccinia-related kinase bound to a N-propynyl-N-ethyl-dihydropteridine inhibitor
To Be Published
5KNI
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BU of 5kni by Molmil
Crystal Structure of the wild-type SAM domain of human Tankyrase-1
Descriptor: Tankyrase-1
Authors:Pascal, J.M, McCauley, M, Langelier, M.F, Riccio, A.A.
Deposit date:2016-06-28
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Tankyrase Sterile alpha Motif Domain Polymerization Is Required for Its Role in Wnt Signaling.
Structure, 24, 2016
5KOD
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BU of 5kod by Molmil
Crystal Structure of GH3.5 Acyl Acid Amido Synthetase from Arabidopsis thaliana
Descriptor: 1H-INDOL-3-YLACETIC ACID, ADENOSINE MONOPHOSPHATE, Indole-3-acetic acid-amido synthetase GH3.5, ...
Authors:Jez, J.M, Westfall, C.S, Zubieta, C.
Deposit date:2016-06-30
Release date:2016-11-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Arabidopsis thaliana GH3.5 acyl acid amido synthetase mediates metabolic crosstalk in auxin and salicylic acid homeostasis.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5UVI
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BU of 5uvi by Molmil
Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using Synchrotron Radiation
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a, ...
Authors:Martin-Garcia, J.M, Conrad, C.E, Nelson, G, Stander, N, Zatsepin, N.A, Zook, J, Zhu, L, Geiger, J, Chun, E, Kissick, D, Hilgart, M.C, Ogata, C, Ishchenko, A, Nagaratnam, N, Roy-Chowdhury, S, Coe, J, Subramanian, G, Schaffer, A, James, D, Ketawala, G, Venugopalan, N, Xu, S, Corcoran, S, Ferguson, D, Weierstall, U, Spence, J.C.H, Cherezov, V, Fromme, P, Fischetti, R.F, Liu, W.
Deposit date:2017-02-20
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation.
IUCrJ, 4, 2017
6BN1
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BU of 6bn1 by Molmil
Salvador Hippo SARAH domain complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, NICKEL (II) ION, Scaffold protein salvador, ...
Authors:Cairns, L, Kavran, J.M.
Deposit date:2017-11-15
Release date:2018-03-14
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Salvador has an extended SARAH domain that mediates binding to Hippo kinase.
J. Biol. Chem., 293, 2018
5KY9
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BU of 5ky9 by Molmil
mouse POFUT1 in complex with mouse Notch1 EGF12 mutant (D464G/A465G) and GDP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GDP-fucose protein O-fucosyltransferase 1, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Li, Z, Rini, J.M.
Deposit date:2016-07-21
Release date:2017-05-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1.
Nat. Chem. Biol., 13, 2017
5VZ7
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BU of 5vz7 by Molmil
Pre-catalytic ternary complex of human Polymerase Mu (G433A) mutant with incoming nonhydrolyzable UMPNPP
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, ...
Authors:Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C.
Deposit date:2017-05-27
Release date:2017-07-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Structural accommodation of ribonucleotide incorporation by the DNA repair enzyme polymerase Mu.
Nucleic Acids Res., 45, 2017
5KTZ
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BU of 5ktz by Molmil
expanded poliovirus in complex with VHH 12B
Descriptor: Genome polyprotein, VHH 12B, VP1, ...
Authors:Strauss, M, Schotte, L, Filman, D.J, Hogle, J.M.
Deposit date:2016-07-12
Release date:2016-11-02
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cryo-electron Microscopy Structures of Expanded Poliovirus with VHHs Sample the Conformational Repertoire of the Expanded State.
J. Virol., 91, 2017
5VZD
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BU of 5vzd by Molmil
Pre-catalytic ternary complex of human Polymerase Mu (W434A) mutant with incoming nonhydrolyzable UMPNPP
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, ...
Authors:Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C.
Deposit date:2017-05-27
Release date:2017-07-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Structural accommodation of ribonucleotide incorporation by the DNA repair enzyme polymerase Mu.
Nucleic Acids Res., 45, 2017
5KY4
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BU of 5ky4 by Molmil
mouse POFUT1 in complex with mouse Notch1 EGF26 and GDP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GDP-fucose protein O-fucosyltransferase 1, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Li, Z, Rini, J.M.
Deposit date:2016-07-21
Release date:2017-05-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.472 Å)
Cite:Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1.
Nat. Chem. Biol., 13, 2017
5Y25
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BU of 5y25 by Molmil
EGFR kinase domain mutant (T790M/L858R) with covalent ligand NS-062
Descriptor: (2R)-N-[4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-(3-morpholin-4-ylpropoxy)quinazolin-6-yl]-1-(2-fluoranylethanoyl)pyrrolidine-2-carboxamide, Epidermal growth factor receptor
Authors:Shiroishi, M, Abe, Y, Caaveiro, J.M.M, Sakamoto, S, Morimoto, S, Fuchida, H, Shindo, N, Ojida, A.
Deposit date:2017-07-24
Release date:2018-07-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Selective and reversible modification of kinase cysteines with chlorofluoroacetamides.
Nat.Chem.Biol., 15, 2019
6CWV
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BU of 6cwv by Molmil
Protein Tyrosine Phosphatase 1B A122S mutant
Descriptor: MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1
Authors:Hjortness, M, Zwart, P, Sankaran, B, Fox, J.M.
Deposit date:2018-03-31
Release date:2018-10-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.98002291 Å)
Cite:Evolutionarily Conserved Allosteric Communication in Protein Tyrosine Phosphatases.
Biochemistry, 57, 2018
5KO8
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BU of 5ko8 by Molmil
Crystal structure of haliscomenobacter hydrossis iodotyrosine deiodinase (IYD) bound to FMN and mono-iodotyrosine (I-Tyr)
Descriptor: 3-IODO-TYROSINE, FLAVIN MONONUCLEOTIDE, Nitroreductase
Authors:Ingavat, N, Kavran, J.M, Sun, Z, Rokita, S.E.
Deposit date:2016-06-29
Release date:2017-02-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Active Site Binding Is Not Sufficient for Reductive Deiodination by Iodotyrosine Deiodinase.
Biochemistry, 56, 2017
5L0T
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BU of 5l0t by Molmil
human POGLUT1 in complex with EGF(+) and UDP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Li, Z, Rini, J.M.
Deposit date:2016-07-28
Release date:2017-08-09
Last modified:2021-03-24
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Structural basis of Notch O-glucosylation and O-xylosylation by mammalian protein-O-glucosyltransferase 1 (POGLUT1).
Nat Commun, 8, 2017
5VRG
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BU of 5vrg by Molmil
Structural insights into lipoprotein N-acylation by Escherichia coli apolipoprotein N-acyltransferase
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Apolipoprotein N-acyltransferase, CHLORIDE ION, ...
Authors:Murray, J.M, Noland, C.L.
Deposit date:2017-05-10
Release date:2017-07-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.518 Å)
Cite:Structural insights into lipoprotein N-acylation by Escherichia coli apolipoprotein N-acyltransferase.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5L1H
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BU of 5l1h by Molmil
AMPA subtype ionotropic glutamate receptor GluA2 in complex with noncompetitive inhibitor GYKI53655
Descriptor: (8R)-5-(4-aminophenyl)-N,8-dimethyl-8,9-dihydro-2H,7H-[1,3]dioxolo[4,5-h][2,3]benzodiazepine-7-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor 2
Authors:Yelshanskaya, M.V, Singh, A.K, Sampson, J.M, Sobolevsky, A.I.
Deposit date:2016-07-29
Release date:2016-10-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.801 Å)
Cite:Structural Bases of Noncompetitive Inhibition of AMPA-Subtype Ionotropic Glutamate Receptors by Antiepileptic Drugs.
Neuron, 91, 2016
5VX0
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BU of 5vx0 by Molmil
Bak in complex with Bim-h3Glg
Descriptor: 1,2-ETHANEDIOL, Bcl-2 homologous antagonist/killer, Bcl-2-like protein 11, ...
Authors:Brouwer, J.M, Lan, P, Lessene, G, Colman, P.M, Czabotar, P.E.
Deposit date:2017-05-23
Release date:2017-11-15
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Conversion of Bim-BH3 from Activator to Inhibitor of Bak through Structure-Based Design.
Mol. Cell, 68, 2017
5KY0
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BU of 5ky0 by Molmil
mouse POFUT1 in complex with mouse Notch1 EGF12(D464G) and GDP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GDP-fucose protein O-fucosyltransferase 1, GLYCEROL, ...
Authors:Li, Z, Rini, J.M.
Deposit date:2016-07-20
Release date:2017-05-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1.
Nat. Chem. Biol., 13, 2017
5L1B
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BU of 5l1b by Molmil
AMPA subtype ionotropic glutamate receptor GluA2 in Apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor 2,Glutamate receptor 2
Authors:Yelshanskaya, M.V, Singh, A.K, Sampson, J.M, Sobolevsky, A.I.
Deposit date:2016-07-28
Release date:2016-10-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural Bases of Noncompetitive Inhibition of AMPA-Subtype Ionotropic Glutamate Receptors by Antiepileptic Drugs.
Neuron, 91, 2016

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