Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42880 results

3K71
DownloadVisualize
BU of 3k71 by Molmil
Structure of integrin alphaX beta2 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Xie, C, Zhu, J, Chen, X, Mi, L, Nishida, N, Springer, T.A.
Deposit date:2009-10-11
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.95 Å)
Cite:Structure of an integrin with an alphaI domain, complement receptor type 4.
Embo J., 29, 2010
8I0Q
DownloadVisualize
BU of 8i0q by Molmil
Structure of beta-arrestin1 in complex with a phosphopeptide corresponding to the human C-X-C chemokine receptor type 4, CXCR4 (Local refine)
Descriptor: Beta-arrestin-1, C-X-C chemokine receptor type 4, Fab30 Heavy Chain, ...
Authors:Maharana, J, Sarma, P, Yadav, M.K, Banerjee, R, Shukla, A.K.
Deposit date:2023-01-11
Release date:2023-05-17
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.45 Å)
Cite:Structural snapshots uncover a key phosphorylation motif in GPCRs driving beta-arrestin activation.
Mol.Cell, 83, 2023
8I10
DownloadVisualize
BU of 8i10 by Molmil
Structure of beta-arrestin2 in complex with a phosphopeptide corresponding to the human Vasopressin V2 receptor, V2R (Local refine)
Descriptor: Beta-arrestin-2, Fab30 Heavy Chain, Fab30 Light Chain, ...
Authors:Maharana, J, Sarma, P, Yadav, M.K, Banerjee, R, Shukla, A.K.
Deposit date:2023-01-12
Release date:2023-05-17
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:Structural snapshots uncover a key phosphorylation motif in GPCRs driving beta-arrestin activation.
Mol.Cell, 83, 2023
6SQH
DownloadVisualize
BU of 6sqh by Molmil
Crystal structure of mouse PRMT6 with partial C-terminal TEV cleavage site
Descriptor: Protein arginine N-methyltransferase 6
Authors:Bonnefond, L, Cavarelli, J.
Deposit date:2019-09-04
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Crystal structure of mouse PRMT6 in complex with inhibitors
To be published
4NN2
DownloadVisualize
BU of 4nn2 by Molmil
Protein Crystal Structure of Human Borjeson-Forssman-Lehmann Syndrome Associated Protein PHF6
Descriptor: GLYCEROL, PHD finger protein 6, ZINC ION
Authors:Liu, Z, Li, F, Zhang, J, Mei, Y, Wu, J, Shi, Y.
Deposit date:2013-11-16
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.472 Å)
Cite:Crystal Structure of the second extended PHD domain of human PHF6 protein
J.Biol.Chem., 2014
4J3Z
DownloadVisualize
BU of 4j3z by Molmil
Crystal structure of mandelate racemase/muconate lactonizing enzyme from Jannaschia sp. CCS1
Descriptor: Mandelate racemase/muconate lactonizing enzyme
Authors:Malashkevich, V.N, Bhosle, R, Toro, R, Hillerich, B, Gizzi, A, Garforth, S, Kar, A, Chan, M.K, Lafluer, J, Patel, H, Matikainen, B, Chamala, S, Lim, S, Celikgil, A, Villegas, G, Evans, B, Zenchek, W, Love, J, Fiser, A, Khafizov, K, Seidel, R, Bonanno, J.B, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-02-06
Release date:2013-03-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of mandelate racemase/muconate lactonizing enzyme from Jannaschia sp. CCS1
To be Published
6SP5
DownloadVisualize
BU of 6sp5 by Molmil
Structure of hyperstable haloalkane dehalogenase variant DhaA115
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Haloalkane dehalogenase, ...
Authors:Chmelova, K, Markova, K, Damborsky, J, Marek, M.
Deposit date:2019-08-30
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst.
Chem Sci, 11, 2020
6XIW
DownloadVisualize
BU of 6xiw by Molmil
Cryo-EM structure of the sodium leak channel NALCN-FAM155A complex
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kschonsak, M, Chua, H.C, Noland, C.L, Weidling, C, Clairfeuille, T, Bahlke, O.O, Ameen, A.O, Li, Z.R, Arthur, C.P, Ciferri, C, Pless, S.A, Payandeh, J.
Deposit date:2020-06-22
Release date:2020-07-29
Last modified:2020-11-25
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of the human sodium leak channel NALCN.
Nature, 587, 2020
7A56
DownloadVisualize
BU of 7a56 by Molmil
Schmallenberg Virus Envelope Glycoprotein Gc Fusion Domains in Postfusion Conformation
Descriptor: CHLORIDE ION, Envelopment polyprotein, PHOSPHATE ION, ...
Authors:Hellert, J, Guardado-Calvo, P, Rey, F.A.
Deposit date:2020-08-20
Release date:2021-09-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure, function, and evolution of the Orthobunyavirus membrane fusion glycoprotein.
Cell Rep, 42, 2023
1ZLI
DownloadVisualize
BU of 1zli by Molmil
Crystal structure of the tick carboxypeptidase inhibitor in complex with human carboxypeptidase B
Descriptor: Carboxypeptidase B, ZINC ION, carboxypeptidase inhibitor
Authors:Arolas, J.L, Popowicz, G.M, Lorenzo, J, Sommerhoff, C.P, Huber, R, Aviles, F.X, Holak, T.A.
Deposit date:2005-05-06
Release date:2005-07-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:The Three-Dimensional Structures of Tick Carboxypeptidase Inhibitor in Complex with A/B Carboxypeptidases Reveal a Novel Double-headed Binding Mode
J.Mol.Biol., 350, 2005
6XLS
DownloadVisualize
BU of 6xls by Molmil
The 1.80 Angstrom crystal structure of galactose oxidase variant with genetically incorporated F2-Tyr272
Descriptor: ACETATE ION, CALCIUM ION, COPPER (II) ION, ...
Authors:Liu, A, Li, J.
Deposit date:2020-06-29
Release date:2021-02-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.797 Å)
Cite:Formation of Monofluorinated Radical Cofactor in Galactose Oxidase through Copper-Mediated C-F Bond Scission.
J.Am.Chem.Soc., 142, 2020
2HSR
DownloadVisualize
BU of 2hsr by Molmil
13mer duplex DNA containing an abasic site with beta anomer
Descriptor: 5'-D(*CP*CP*AP*AP*AP*GP*(AAB)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'
Authors:Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J.
Deposit date:2006-07-22
Release date:2007-05-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites.
Biochemistry, 46, 2007
7A57
DownloadVisualize
BU of 7a57 by Molmil
La Crosse Virus Envelope Glycoprotein Gc W1066H Mutant Fusion Domains in Postfusion Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Envelopment polyprotein
Authors:Hellert, J, Guardado-Calvo, P, Rey, F.A.
Deposit date:2020-08-20
Release date:2021-09-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.155 Å)
Cite:Structure, function, and evolution of the Orthobunyavirus membrane fusion glycoprotein.
Cell Rep, 42, 2023
6XPD
DownloadVisualize
BU of 6xpd by Molmil
Cryo-EM structure of human ZnT8 double mutant - D110N and D224N, determined in outward-facing conformation
Descriptor: ZINC ION, Zinc transporter 8
Authors:Bai, X.C, Xue, J, Jiang, Y.X.
Deposit date:2020-07-08
Release date:2020-08-05
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures of human ZnT8 in both outward- and inward-facing conformations.
Elife, 9, 2020
6XPM
DownloadVisualize
BU of 6xpm by Molmil
Crystal Structure of Sialate O-acetylesterase from Bacteroides vulgatus with microfluidics crystals at room temperature
Descriptor: Lysophospholipase L1, SODIUM ION
Authors:Kim, Y, Johnson, J, Welk, L, Endres, M, Levens, A, Sherrell, D.A, Babnigg, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2020-07-08
Release date:2020-07-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Sialate O-acetylesterase from Bacteroides vulgatus with microfluidics crystals at room temperature
To Be Published
4EUN
DownloadVisualize
BU of 4eun by Molmil
Crystal structure of a sugar kinase (Target EFI-502144 from Janibacter sp. HTCC2649), unliganded structure
Descriptor: SULFATE ION, thermoresistant glucokinase
Authors:Vetting, M.W, Toro, R, Bhosle, R, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-04-25
Release date:2012-05-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a sugar kinase (Target EFI-502144 from Janibacter sp. HTCC2649), unliganded structure
To be Published
7V3L
DownloadVisualize
BU of 7v3l by Molmil
MERS S ectodomain trimer in complex with neutralizing antibody 6516
Descriptor: Spike glycoprotein, antibody H, antibody L
Authors:Wang, X, Zhao, J, Wang, Z, Wang, Y, Zeng, J.
Deposit date:2021-08-10
Release date:2022-08-17
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:MERS S ectodomain trimer in complex with neutralizing antibody 6516
to be published
6T13
DownloadVisualize
BU of 6t13 by Molmil
CRYSTAL STRUCTURE OF GLUCOCEREBROSIDASE IN COMPLEX WITH A PYRROLOPYRAZINE
Descriptor: 1,2-ETHANEDIOL, 1-[4-[2-(4-methoxyphenyl)-5-methyl-pyrrolo[2,3-b]pyrazin-6-yl]piperidin-1-yl]ethanone, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Benz, J, Ehler, A, Hug, M, Huber, S, Rufer, A.C, Guba, W, Jagasia, R, Hofmann, E.C, Rodriguez Sarmiento, R.M.
Deposit date:2019-10-03
Release date:2020-12-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Novel beta-Glucocerebrosidase Activators That Bind to a New Pocket at a Dimer Interface and Induce Dimerization.
Angew.Chem.Int.Ed.Engl., 60, 2021
7A9K
DownloadVisualize
BU of 7a9k by Molmil
Co-substituted Keggin silicotungstate with covalent bond to proteinase K
Descriptor: Co-substituted Keggin silicotungstate, Proteinase K, SULFATE ION
Authors:Breibeck, J, Rompel, A.
Deposit date:2020-09-02
Release date:2021-10-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Speciation of Transition-Metal-Substituted Keggin-Type Silicotungstates Affected by the Co-crystallization Conditions with Proteinase K.
Inorg.Chem., 60, 2021
6XV4
DownloadVisualize
BU of 6xv4 by Molmil
Neutron structure of ferric ascorbate peroxidase-ascorbate complex
Descriptor: ASCORBIC ACID, Ascorbate peroxidase, POTASSIUM ION, ...
Authors:Kwon, H, Basran, J, Devos, J.M, Schrader, T.E, Ostermann, A, Blakeley, M.P, Raven, E.L, Moody, P.C.E.
Deposit date:2020-01-21
Release date:2020-03-18
Last modified:2024-05-01
Method:NEUTRON DIFFRACTION (1.9 Å), X-RAY DIFFRACTION
Cite:Visualizing the protons in a metalloenzyme electron proton transfer pathway.
Proc.Natl.Acad.Sci.USA, 117, 2020
7A5A
DownloadVisualize
BU of 7a5a by Molmil
Crimean-Congo Hemorrhagic Fever Virus Envelope Glycoprotein Gc W1191H/W1197A/W1199A Mutant in Postfusion Conformation (Monoclinic Crystal Form)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Envelopment polyprotein
Authors:Hellert, J, Guardado-Calvo, P, Rey, F.A.
Deposit date:2020-08-20
Release date:2021-10-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.989 Å)
Cite:Structural basis of synergistic neutralization of Crimean-Congo hemorrhagic fever virus by human antibodies.
Science, 375, 2022
7A9F
DownloadVisualize
BU of 7a9f by Molmil
Co-substituted Keggin silicotungstate with covalent bond to proteinase K
Descriptor: Co-substituted Keggin silicotungstate, Proteinase K, SULFATE ION
Authors:Breibeck, J, Rompel, A.
Deposit date:2020-09-02
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Speciation of Transition-Metal-Substituted Keggin-Type Silicotungstates Affected by the Co-crystallization Conditions with Proteinase K.
Inorg.Chem., 60, 2021
7A59
DownloadVisualize
BU of 7a59 by Molmil
Crimean-Congo Hemorrhagic Fever Virus Envelope Glycoprotein Gc W1191H/W1197A/W1199A Mutant in Postfusion Conformation (Orthorhombic Crystal Form)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Envelopment polyprotein, ...
Authors:Hellert, J, Guardado-Calvo, P, Rey, F.A.
Deposit date:2020-08-20
Release date:2021-10-06
Last modified:2022-04-20
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:Structural basis of synergistic neutralization of Crimean-Congo hemorrhagic fever virus by human antibodies.
Science, 375, 2022
6DLB
DownloadVisualize
BU of 6dlb by Molmil
Crystal Structure of an influenza A hemagglutinin antibody Fab CH65:1203d4 chimera
Descriptor: CH65:1203d4 Fab heavy chain, CH65:1203d4 Fab light chain, SULFATE ION
Authors:Dong, J, Finn, J.A, Crowe, J.E.
Deposit date:2018-05-31
Release date:2019-06-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring.
Structure, 28, 2020
6Y84
DownloadVisualize
BU of 6y84 by Molmil
SARS-CoV-2 main protease with unliganded active site (2019-nCoV, coronavirus disease 2019, COVID-19)
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE
Authors:Owen, C.D, Lukacik, P, Strain-Damerell, C.M, Douangamath, A, Powell, A.J, Fearon, D, Brandao-Neto, J, Crawshaw, A.D, Aragao, D, Williams, M, Flaig, R, Hall, D.R, McAuley, K.E, Mazzorana, M, Stuart, D.I, von Delft, F, Walsh, M.A.
Deposit date:2020-03-03
Release date:2020-03-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:COVID-19 main protease with unliganded active site
To Be Published

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon