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PDB: 42938 results

3DXC
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BU of 3dxc by Molmil
Crystal structure of the intracellular domain of human APP in complex with Fe65-PTB2
Descriptor: Amyloid beta A4 protein, Amyloid beta A4 protein-binding family B member 1
Authors:Radzimanowski, J, Sinning, I, Wild, K.
Deposit date:2008-07-24
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the intracellular domain of the amyloid precursor protein in complex with Fe65-PTB2.
Embo Rep., 9, 2008
6K61
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BU of 6k61 by Molmil
Cryo-EM structure of the tetrameric photosystem I from a heterocyst-forming cyanobacterium Anabaena sp. PCC7120
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Zheng, L, Li, Y, Li, X, Zhong, Q, Li, N, Zhang, K, Zhang, Y, Chu, H, Ma, C, Li, G, Zhao, J, Gao, N.
Deposit date:2019-05-31
Release date:2019-10-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.37 Å)
Cite:Structural and functional insights into the tetrameric photosystem I from heterocyst-forming cyanobacteria.
Nat.Plants, 5, 2019
5V7Z
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BU of 5v7z by Molmil
SSNMR Structure of the Human RIP1/RIP3 Necrosome
Descriptor: PRO-LEU-VAL-ASN-ILE-TYR-ASN-CYS-SER-GLY-VAL-GLN-VAL-GLY-ASP, THR-ILE-TYR-ASN-SER-THR-GLY-ILE-GLN-ILE-GLY-ALA-TYR-ASN-TYR-MET-GLU-ILE
Authors:Mompean, M, Li, W, Li, J, Laage, S, Siemer, A.B, Wu, H, McDermott, A.E.
Deposit date:2017-03-21
Release date:2018-03-28
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:The Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex.
Cell, 173, 2018
6K53
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BU of 6k53 by Molmil
A variant of metagenome-derived GH6 cellobiohydrolase, HmCel6A (P88S/L230F/F414S)
Descriptor: CITRATE ANION, GH6 cellobiohydrolase, HMCEL6A, ...
Authors:Baba, S, Takeda, M, Okuma, J, Hirose, Y, Nishimura, A, Takata, M, Oda, K, Shibata, D, Kondo, Y, Kumasaka, T.
Deposit date:2019-05-28
Release date:2020-06-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:A hyperthermophilic GH6 cellobiohydrolase (HmCel6A) from a hot spring metagenomic data
To Be Published
6DV4
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BU of 6dv4 by Molmil
HIV-1 wild type protease with GRL-04315A, a tetrahydronaphthalene carboxamide with (R)-Boc-amine and (S)-hydroxyl functionalities as the P2 ligand
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Wang, Y.-F, Agniswamy, J, Weber, I.T.
Deposit date:2018-06-22
Release date:2018-10-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Design, synthesis, and X-ray studies of potent HIV-1 protease inhibitors incorporating aminothiochromane and aminotetrahydronaphthalene carboxamide derivatives as the P2 ligands.
Eur J Med Chem, 160, 2018
4A07
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BU of 4a07 by Molmil
Human PDK1 Kinase Domain in Complex with Allosteric Activator PS171 Bound to the PIF-Pocket
Descriptor: (3S)-3-(4-CHLOROPHENYL)-4-(5,7-DICHLORO-1H-BENZIMIDAZOL-2-YL)BUTANOIC ACID, 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Schulze, J.O, Lopez-Garcia, L.A, Froehner, W, Zhang, H, Navratil, J, Hindie, V, Zeuzem, S, Alzari, P.M, Neimanis, S, Engel, M, Biondi, R.M.
Deposit date:2011-09-08
Release date:2011-12-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Allosteric Regulation of Protein Kinase Pkczeta by the N-Terminal C1 Domain and Small Compounds to the Pif-Pocket.
Chem.Biol., 18, 2011
6K9A
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BU of 6k9a by Molmil
The complex of NrS-1 N terminal domain (1-305) with dGTP
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Primase
Authors:Chen, X, Gan, J.
Deposit date:2019-06-14
Release date:2020-06-17
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural studies reveal a unique ring-shaped helicase architecture at the C-terminus of deep-sea vent phage DNA polymerase
To Be Published
3DZQ
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BU of 3dzq by Molmil
Human EphA3 kinase domain in complex with inhibitor AWL-II-38.3
Descriptor: EPH receptor A3, N-[2-methyl-5-({[3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]carbonyl}amino)phenyl]isoxazole-5-carboxamide
Authors:Walker, J.R, Syeda, F, Gray, N, Mansoor, W, Mackenzie, F, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2008-07-30
Release date:2008-08-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Kinase Domain of Human Ephrin Type-A Receptor 3 (Epha3) in Complex with ALW-II-38-3.
To be Published
6HA8
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BU of 6ha8 by Molmil
Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Crowe-McAuliffe, C, Graf, M, Huter, P, Abdelshahid, M, Novacek, J, Wilson, D.N.
Deposit date:2018-08-07
Release date:2018-08-29
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3E0E
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BU of 3e0e by Molmil
Crystal structure of a domain of replication protein A from Methanococcus maripaludis. NorthEast Structural Genomics targe MrR110B
Descriptor: Replication protein A
Authors:Seetharaman, J, Chen, Y, Wang, H, Janjua, H, Foote, E.L, Xiao, R, Nair, R, Everett, J.K, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-07-31
Release date:2008-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a domain of replication protein A from Methanococcus maripaludis. NorthEast Structural Genomics targe MrR110B
To be Published
4A04
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BU of 4a04 by Molmil
Structure of the DNA-bound T-box domain of human TBX1, a transcription factor associated with the DiGeorge syndrome
Descriptor: DNA, T-BOX TRANSCRIPTION FACTOR TBX1
Authors:El Omari, K, De Mesmaeker, J, Karia, D, Ginn, H, Bhattacharya, S, Mancini, E.J.
Deposit date:2011-09-07
Release date:2011-10-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structure of the DNA-Bound T-Box Domain of Human Tbx1, a Transcription Factor Associated with the Digeorge Syndrome
Proteins, 80, 2012
3IYX
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BU of 3iyx by Molmil
Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of E.coli 70S ribosome (EMD-1056)
Descriptor: 30S ribosomal protein S13, 50S ribosomal protein L31, 50S ribosomal protein L5
Authors:Shasmal, M, Chakraborty, B, Sengupta, J.
Deposit date:2010-07-23
Release date:2010-09-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome
Biochem.Biophys.Res.Commun., 399, 2010
6DRK
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BU of 6drk by Molmil
Structure of TRPM2 ion channel receptor by single particle electron cryo-microscopy, Apo state
Descriptor: Transient receptor potential cation channel, subfamily M, member 2
Authors:Du, J, Lu, W, Huang, Y, Winkler, P, Sun, W.
Deposit date:2018-06-12
Release date:2018-09-19
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Architecture of the TRPM2 channel and its activation mechanism by ADP-ribose and calcium.
Nature, 562, 2018
4A64
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BU of 4a64 by Molmil
Crystal structure of the N-terminal domain of human Cul4B at 2.57A resolution
Descriptor: 1,2-ETHANEDIOL, CULLIN-4B
Authors:Vollmar, M, Ayinampudi, V, Cooper, C, Guo, K, Krojer, T, Muniz, J.R.C, von Delft, F, Weigelt, J, Arrowsmith, C.H, Bountra, C, Edwards, A, Bullock, A.
Deposit date:2011-10-31
Release date:2012-02-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Crystal Structure of the N-Terminal Domain of Human Cul4B at 2.57A Resolution
To be Published
6DT0
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BU of 6dt0 by Molmil
Cryo-EM structure of a mitochondrial calcium uniporter
Descriptor: CALCIUM ION, Mitochondrial calcium uniporter
Authors:Yoo, J, Wu, M, Yin, Y, Herzik, M.A.J, Lander, G.C, Lee, S.-Y.
Deposit date:2018-06-14
Release date:2018-07-11
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of a mitochondrial calcium uniporter.
Science, 361, 2018
1KKX
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BU of 1kkx by Molmil
Solution structure of the DNA-binding domain of ADR6
Descriptor: Transcription regulatory protein ADR6
Authors:Tu, X, Wu, J, Xu, Y, Shi, Y.
Deposit date:2001-12-10
Release date:2002-07-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:1H, 13C and 15N resonance assignments and secondary structure of ADR6 DNA-binding domain.
J.Biomol.Nmr, 21, 2001
3IYD
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BU of 3iyd by Molmil
Three-dimensional EM structure of an intact activator-dependent transcription initiation complex
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, DNA (98-MER), ...
Authors:Hudson, B.P, Quispe, J, Lara, S, Kim, Y, Berman, H, Arnold, E, Ebright, R.H, Lawson, C.L.
Deposit date:2009-08-01
Release date:2009-11-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (19.799999 Å)
Cite:Three-dimensional EM structure of an intact activator-dependent transcription initiation complex
Proc.Natl.Acad.Sci.USA, 106, 2009
3ZZW
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BU of 3zzw by Molmil
Crystal structure of the kinase domain of ROR2
Descriptor: CHLORIDE ION, SULFATE ION, TYROSINE-PROTEIN KINASE TRANSMEMBRANE RECEPTOR ROR2
Authors:Tresaugues, L, Moche, M, Arrowsmith, C.H, Berglund, H, Bountra, C, Edwards, A.M, Ekblad, T, Graslund, S, Karlberg, T, Nyman, T, Schuler, H, Thorsell, A.G, Weigelt, J, Nordlund, P, Structural Genomics Consortium (SGC)
Deposit date:2011-09-05
Release date:2011-09-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of the Kinase Domain of Ror2
To be Published
4A90
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BU of 4a90 by Molmil
Crystal structure of mouse SAP18 residues 1-143
Descriptor: GLYCEROL, HISTONE DEACETYLASE COMPLEX SUBUNIT SAP18
Authors:Murachelli, A.G, Ebert, J, Basquin, C, Le Hir, H, Conti, E.
Deposit date:2011-11-22
Release date:2012-03-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Structure of the Asap Core Complex Reveals the Existence of a Pinin-Containing Psap Complex
Nat.Struct.Mol.Biol., 19, 2012
3FRV
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BU of 3frv by Molmil
Structure of Human CHMP3 (residues 1-150)
Descriptor: Charged multivesicular body protein 3
Authors:Hill, C.P, Schubert, H.L, McCullough, J, Sundquist, W.I.
Deposit date:2009-01-08
Release date:2009-06-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural basis for ESCRT-III protein autoinhibition.
Nat.Struct.Mol.Biol., 16, 2009
3FGB
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BU of 3fgb by Molmil
Crystal structure of the Q89ZH8_BACTN protein from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium target BtR289b.
Descriptor: uncharacterized protein Q89ZH8_BACTN
Authors:Vorobiev, S.M, Lew, S, Seetharaman, J, Lee, D, Foote, L.E, Ciccosanti, C, Janjua, H, Xiao, R, Acton, T, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-12-05
Release date:2008-12-23
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the Q89ZH8_BACTN protein from Bacteroides thetaiotaomicron.
To be Published
6DV3
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BU of 6dv3 by Molmil
Structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG in the open gate state
Descriptor: Protein InvG
Authors:Hu, J, Worrall, L.J, Vuckovic, M, Atkinson, C.E, Strynadka, N.C.J.
Deposit date:2018-06-22
Release date:2018-10-03
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Cryo-EM analysis of the T3S injectisome reveals the structure of the needle and open secretin.
Nat Commun, 9, 2018
3F4N
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BU of 3f4n by Molmil
Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein PdxJ from Yersinia pestis
Descriptor: PYRIDOXINE-5'-PHOSPHATE, Pyridoxine 5'-phosphate synthase, SULFATE ION
Authors:Kim, Y, Maltseva, N, Stam, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2008-11-01
Release date:2008-11-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein PdxJ from Yersinia pestis
To be Published, 2008
4A4W
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BU of 4a4w by Molmil
Ligand binding domain of human PPAR gamma in complex with amorfrutin B
Descriptor: AMORFRUTIN B, PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
Authors:de Groot, J.C, Weidner, C, Krausze, J, Kawamoto, K, Schroeder, F.C, Sauer, S, Buessow, K.
Deposit date:2011-10-20
Release date:2012-10-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Characterization of Amorfrutins Bound to the Peroxisome Proliferator-Activated Receptor Gamma.
J.Med.Chem., 56, 2013
6D6T
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BU of 6d6t by Molmil
Human GABA-A receptor alpha1-beta2-gamma2 subtype in complex with GABA and flumazenil, conformation B
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, GAMMA-AMINO-BUTANOIC ACID, ...
Authors:Zhu, S, Noviello, C.M, Teng, J, Walsh Jr, R.M, Kim, J.J, Hibbs, R.E.
Deposit date:2018-04-22
Release date:2018-06-27
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.86 Å)
Cite:Structure of a human synaptic GABAAreceptor.
Nature, 559, 2018

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