Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42507 件

4PDH
DownloadVisualize
BU of 4pdh by Molmil
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM POLAROMONAS SP JS666 (Bpro_1871, TARGET EFI-510164) BOUND TO D-ERYTHRONATE
分子名称: (2R,3R)-2,3,4-trihydroxybutanoic acid, TRAP dicarboxylate transporter, DctP subunit
著者Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2014-04-18
公開日2014-05-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
8JJA
DownloadVisualize
BU of 8jja by Molmil
SP1746 in complex with acetate ions
分子名称: ACETATE ION, FE (III) ION, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
著者Jin, Y, Niu, L, Ke, J.
登録日2023-05-30
公開日2024-05-08
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and biochemical characterization of a nucleotide hydrolase from Streptococcus pneumonia.
Structure, 2024
1SGH
DownloadVisualize
BU of 1sgh by Molmil
Moesin FERM domain bound to EBP50 C-terminal peptide
分子名称: Ezrin-radixin-moesin binding phosphoprotein 50, Moesin
著者Finnerty, C.M, Chambers, D, Ingraffea, J, Faber, H.R, Karplus, P.A, Bretscher, A.
登録日2004-02-23
公開日2004-06-29
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献The EBP50-moesin interaction involves a binding site regulated by direct masking on the FERM domain
J.Cell.Sci., 117, 2004
4PE3
DownloadVisualize
BU of 4pe3 by Molmil
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RHODOBACTER SPHAEROIDES (Rsph17029_3620, TARGET EFI-510199), APO OPEN STRUCTURE
分子名称: 1,2-ETHANEDIOL, ACETATE ION, IMIDAZOLE, ...
著者Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2014-04-22
公開日2014-05-14
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
2YNW
DownloadVisualize
BU of 2ynw by Molmil
GIM-1-2Mol native. Crystal structures of Pseudomonas aeruginosa GIM- 1: active site plasticity in metallo-beta-lactamases
分子名称: GIM-1 PROTEIN, GLYCEROL, SULFATE ION, ...
著者Borra, P.S, Samuelsen, O, Spencer, J, Lorentzen, M.S, Leiros, H.-K.S.
登録日2012-10-18
公開日2013-07-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structures of Pseudomonas Aeruginosa Gim-1: Active-Site Plasticity in Metallo-Beta-Lactamases.
Antimicrob.Agents Chemother., 57, 2013
1PBU
DownloadVisualize
BU of 1pbu by Molmil
Solution structure of the C-terminal domain of the human eEF1Bgamma subunit
分子名称: Elongation factor 1-gamma
著者Vanwetswinkel, S, Kriek, J, Andersen, G.R, Guntert, P, Dijk, J, Canters, G.W, Siegal, G.
登録日2003-05-15
公開日2003-07-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献1H, (15)N and (13)C resonance assignments of the highly conserved 19 kDa C-terminal domain from human Elongation Factor 1Bgamma.
J.Biomol.Nmr, 26, 2003
4ZSL
DownloadVisualize
BU of 4zsl by Molmil
MITOGEN ACTIVATED PROTEIN KINASE 7 IN COMPLEX WITH INHIBITOR
分子名称: 3-amino-5-[(4-chlorophenyl)amino]-N-[(1S)-1-phenylethyl]-1H-1,2,4-triazole-1-carboxamide, GLYCEROL, Mitogen-activated protein kinase 7
著者Ogg, D.J, Tucker, J.
登録日2015-05-13
公開日2016-05-04
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Discovery of a novel allosteric inhibitor-binding site in ERK5: comparison with the canonical kinase hinge ATP-binding site.
Acta Crystallogr D Struct Biol, 72, 2016
8JK8
DownloadVisualize
BU of 8jk8 by Molmil
SP1746 in complex with UDP
分子名称: 1,2-ETHANEDIOL, FE (III) ION, GLYCEROL, ...
著者Jin, Y, Niu, L, Ke, J.
登録日2023-06-01
公開日2024-05-08
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural and biochemical characterization of a nucleotide hydrolase from Streptococcus pneumonia.
Structure, 2024
7ZHL
DownloadVisualize
BU of 7zhl by Molmil
Salmonella enterica Rhs1 C-terminal toxin TreTu
分子名称: RHS repeat protein, ZINC ION
著者Jurenas, D, Rey, M, Chamot-Rooke, J, Terradot, L, Cascales, E.
登録日2022-04-06
公開日2022-11-23
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Salmonella antibacterial Rhs polymorphic toxin inhibits translation through ADP-ribosylation of EF-Tu P-loop.
Nucleic Acids Res., 50, 2022
5A5W
DownloadVisualize
BU of 5a5w by Molmil
Crystal structure of Salmonella enterica HisA D7N D176A with ProFAR
分子名称: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, [(2R,3S,4R,5R)-5-[4-aminocarbonyl-5-[(E)-[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]amino]methylideneamino]imidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate
著者Soderholm, A, Guo, X, Newton, M.S, Evans, G.B, Nasvall, J, Patrick, W.M, Selmer, M.
登録日2015-06-23
公開日2015-09-02
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Two-Step Ligand Binding in a Beta/Alpha8 Barrel Enzyme -Substrate-Bound Structures Shed New Light on the Catalytic Cycle of Hisa
J.Biol.Chem., 290, 2015
7ZHM
DownloadVisualize
BU of 7zhm by Molmil
Salmonella enterica Rhs1 C-terminal toxin TreTu complex with TriTu immunity protein
分子名称: Immunity protein TriTu, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Rhs1 protein, ...
著者Jurenas, D, Rey, M, Chamot-Rooke, J, Terradot, L, Cascales, E.
登録日2022-04-06
公開日2022-11-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Salmonella antibacterial Rhs polymorphic toxin inhibits translation through ADP-ribosylation of EF-Tu P-loop.
Nucleic Acids Res., 50, 2022
3K6U
DownloadVisualize
BU of 3k6u by Molmil
M. acetivorans Molybdate-Binding Protein (ModA) in Unliganded Open Form
分子名称: Solute-binding protein MA_0280
著者Chan, S, Giuroiu, I, Chernishof, I, Sawaya, M.R, Chiang, J, Gunsalus, R.P, Arbing, M.A, Perry, L.J.
登録日2009-10-09
公開日2010-01-12
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Apo and ligand-bound structures of ModA from the archaeon Methanosarcina acetivorans
Acta Crystallogr.,Sect.F, 66, 2010
2Y6H
DownloadVisualize
BU of 2y6h by Molmil
X-2 L110F CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase
分子名称: CALCIUM ION, XYLANASE
著者von Schantz, L, Hakansson, M, Logan, D.T, Walse, B, Osterlin, J, Nordberg-Karlsson, E, Ohlin, M.
登録日2011-01-21
公開日2012-03-07
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献Structural basis for carbohydrate-binding specificity--a comparative assessment of two engineered carbohydrate-binding modules.
Glycobiology, 22, 2012
5A4P
DownloadVisualize
BU of 5a4p by Molmil
Structure of UBE2Z provides functional insight into specificity in the FAT10 conjugation machinery
分子名称: DI(HYDROXYETHYL)ETHER, MALONATE ION, UBIQUITIN-CONJUGATING ENZYME E2 Z
著者Schelpe, J, Monte, D, Dewitte, F, Sixma, T.K, Rucktooa, P.
登録日2015-06-11
公開日2015-11-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of Ube2Z Provides Functional Insight Into Specificity in the Fat10 Conjugation Machinery
J.Biol.Chem., 291, 2016
8A1Z
DownloadVisualize
BU of 8a1z by Molmil
Crystal structure of Phosphoserine phosphatase SerB from Mycobacterium avium in complex with 1-(2,4-dichlorophenyl)-3-hydroxyurea
分子名称: 1-(2,4-dichlorophenyl)-3-oxidanyl-urea, CHLORIDE ION, MAGNESIUM ION, ...
著者Haufroid, M, Wouters, J.
登録日2022-06-02
公開日2022-11-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Targeting the phosphoserine phosphatase MtSerB2 for tuberculosis drug discovery, an hybrid knowledge based /fragment based approach.
Eur.J.Med.Chem., 245, 2022
8JL1
DownloadVisualize
BU of 8jl1 by Molmil
membrane proteins
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYL COENZYME *A, ...
著者Yu, J, Ge, J.P, Xu, R.S.
登録日2023-06-02
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献membrane proteins
To Be Published
2Y89
DownloadVisualize
BU of 2y89 by Molmil
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PHOSPHORIBOSYL ISOMERASE A (VARIANT D11N)
分子名称: PHOSPHORIBOSYL ISOMERASE A, SULFATE ION
著者Due, A.V, Kuper, J, Geerlof, A, Wilmanns, M.
登録日2011-02-03
公開日2011-03-02
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Bisubstrate Specificity in Histidine/Tryptophan Biosynthesis Isomerase from Mycobacterium Tuberculosis by Active Site Metamorphosis.
Proc.Natl.Acad.Sci.USA, 108, 2011
2YL2
DownloadVisualize
BU of 2yl2 by Molmil
Crystal structure of human acetyl-CoA carboxylase 1, biotin carboxylase (BC) domain
分子名称: ACETYL-COA CARBOXYLASE 1
著者Muniz, J.R.C, Froese, D.S, Krysztofinska, E, Vollmar, M, Beltrami, A, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bountra, C, Yue, W.W, Oppermann, U.
登録日2011-05-31
公開日2011-06-15
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Human Acetyl-Coa Carboxylase 1, Biotin Carboxylase (Bc) Domain
To be Published
7K7W
DownloadVisualize
BU of 7k7w by Molmil
The X-ray crystal structure of SSR4, an S. pombe chromatin remodelling protein: native
分子名称: CHLORIDE ION, GLYCEROL, SWI/SNF and RSC complexes subunit ssr4
著者Peat, T.S, Newman, J.
登録日2020-09-24
公開日2020-12-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献The X-ray crystal structure of the N-terminal domain of Ssr4, a Schizosaccharomyces pombe chromatin-remodelling protein.
Acta Crystallogr.,Sect.F, 76, 2020
5ALB
DownloadVisualize
BU of 5alb by Molmil
Ticagrelor antidote candidate MEDI2452 in complex with ticagrelor
分子名称: MEDI2452 HEAVY CHAIN, MEDI2452 LIGHT CHAIN, Ticagrelor
著者Buchanan, A, Newton, P, Pehrsson, S, Inghardt, T, Antonsson, T, Svensson, P, Sjogren, T, Oster, L, Janefeldt, A, Sandinge, A, Keyes, F, Austin, M, Spooner, J, Penney, M, Howells, G, Vaughan, T, Nylander, S.
登録日2015-03-07
公開日2015-04-01
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Structural and Functional Characterisation of a Specific Antidote for Ticagrelor.
Blood, 125, 2015
8A0V
DownloadVisualize
BU of 8a0v by Molmil
Crystal structure of TEAD3 in complex with CPD2
分子名称: DIMETHYL SULFOXIDE, MYRISTIC ACID, PHOSPHATE ION, ...
著者Scheufler, C, Kallen, J.
登録日2022-05-30
公開日2022-08-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.699 Å)
主引用文献The First Class of Small Molecules Potently Disrupting the YAP-TEAD Interaction by Direct Competition.
Chemmedchem, 17, 2022
3K8A
DownloadVisualize
BU of 3k8a by Molmil
Neisseria gonorrhoeae PriB
分子名称: Putative primosomal replication protein
著者Lopper, M.E, Dong, J, George, N.P, Duckett, K.L, DeBeer, M.A.
登録日2009-10-14
公開日2010-01-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The crystal structure of Neisseria gonorrhoeae PriB reveals mechanistic differences among bacterial DNA replication restart pathways
Nucleic Acids Res., 38, 2010
2Y8A
DownloadVisualize
BU of 2y8a by Molmil
VIM-7 with Oxidised. Structural and computational investigations of VIM-7: Insights into the substrate specificity of VIM metallo-beta- lactamases
分子名称: MAGNESIUM ION, METALLO-B-LACTAMASE, UNKNOWN ATOM OR ION, ...
著者Saradhi, P, Leiros, H.-K.S, Ahmad, R, Spencer, J, Leiros, I, Walsh, T.R, Sundsfjord, A, Samuelsen, O.
登録日2011-02-03
公開日2011-06-15
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Structural and Computational Investigations of Vim- 7: Insights Into the Substrate Specificity of Vim Metallo-Beta-Lactamases
J.Mol.Biol., 411, 2011
2YIX
DownloadVisualize
BU of 2yix by Molmil
Triazolopyridine Inhibitors of p38
分子名称: 1-ethyl-3-(2-{[3-(1-methylethyl)[1,2,4]triazolo[4,3-a]pyridin-6-yl]sulfanyl}benzyl)urea, MITOGEN-ACTIVATED PROTEIN KINASE 14
著者Millan, D.S, Anderson, M, Bunnage, M.E, Burrows, J.L, Butcher, K.J, Dodd, P.G, Evans, T.J, Fairman, D.A, Han, s, Hughes, S.J, Irving, S.L, Kilty, I.C, Lemaitre, A, Lewthawaite, R.A, Mahke, A, Marr, E, Mathias, J.P, Philip, J, Phillips, C, Smith, R.T, Stefaniak, M.H, Yeadon, M.
登録日2011-05-17
公開日2011-11-30
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Design and Synthesis of Inhaled P38 Inhibitors for the Treatment of Chronic Obstructive Pulmonary Disease.
J.Med.Chem., 54, 2011
8JH5
DownloadVisualize
BU of 8jh5 by Molmil
Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the Naproxen-bound state
分子名称: (2S)-2-(6-methoxynaphthalen-2-yl)propanoic acid, Auxin efflux carrier component 1, nanobody
著者Sun, L, Liu, X, Yang, Z, Xia, J.
登録日2023-05-22
公開日2024-05-29
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the Naproxen-bound state
To be published

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon