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PDB: 42254 件

4KAD
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Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with N1-(2.3-dihydro-1H-inden-5-yl)acetam
分子名称: ADENOSINE, DIMETHYL SULFOXIDE, N-(4,7-dihydro-1H-inden-6-yl)acetamide, ...
著者Malashkevich, V.N, Bhosle, R, Toro, R, Hillerich, B, Gizzi, A, Garforth, S, Kar, A, Chan, M.K, Lafluer, J, Patel, H, Matikainen, B, Chamala, S, Lim, S, Celikgil, A, Villegas, G, Evans, B, Love, J, Fiser, A, Khafizov, K, Seidel, R, Bonanno, J.B, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
登録日2013-04-22
公開日2013-05-22
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with N1-(2.3-dihydro-1H-inden-5-yl)acetam
To be Published
7XCP
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Cryo-EM structure of Omicron RBD complexed with ACE2 and 304 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 304 Fab, ...
著者Zhao, Z, Qi, J, Gao, F.G.
登録日2022-03-24
公開日2022-08-31
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Omicron SARS-CoV-2 mutations stabilize spike up-RBD conformation and lead to a non-RBM-binding monoclonal antibody escape
Nat Commun, 13, 2022
6CMX
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BU of 6cmx by Molmil
Human Teneurin 2 extra-cellular region
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Teneurin-2, alpha-D-mannopyranose, ...
著者Shalev-Benami, M, Li, J, Sudhof, T, Skiniotis, G, Arac, D.
登録日2018-03-06
公開日2018-07-25
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural Basis for Teneurin Function in Circuit-Wiring: A Toxin Motif at the Synapse.
Cell, 173, 2018
4YTK
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BU of 4ytk by Molmil
Structure of the KOW1-Linker1 domain of Transcription Elongation Factor Spt5
分子名称: Transcription elongation factor SPT5
著者Meyer, P.A, Li, S, Zhang, M, Yamada, K, Takagi, Y, Hartzog, G.A, Fu, J.
登録日2015-03-17
公開日2015-08-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.0904 Å)
主引用文献Structures and Functions of the Multiple KOW Domains of Transcription Elongation Factor Spt5.
Mol.Cell.Biol., 35, 2015
7CR1
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BU of 7cr1 by Molmil
human KCNQ2 in complex with ztz240
分子名称: N-(6-chloranylpyridin-3-yl)-4-fluoranyl-benzamide, Potassium voltage-gated channel subfamily KQT member 2
著者Li, X, Lv, D, Wang, J, Ye, S, Guo, J.
登録日2020-08-12
公開日2020-09-16
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Molecular basis for ligand activation of the human KCNQ2 channel.
Cell Res., 31, 2021
6CSF
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BU of 6csf by Molmil
Crystal structure of sodium/alanine symporter AgcS with D-alanine bound
分子名称: D-ALANINE, Monoclonal antibody FAB heavy chain, Monoclonal antibody FAB light chain, ...
著者Ma, J, Reyes, F.E, Gonen, T.
登録日2018-03-20
公開日2019-01-30
最終更新日2019-02-20
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural basis for substrate binding and specificity of a sodium-alanine symporter AgcS.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
4YUK
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BU of 4yuk by Molmil
Multiconformer synchrotron model of CypA at 260 K
分子名称: Peptidyl-prolyl cis-trans isomerase A
著者Keedy, D.A, Kenner, L.R, Warkentin, M, Woldeyes, R.A, Thompson, M.C, Brewster, A.S, Van Benschoten, A.H, Baxter, E.L, Hopkins, J.B, Uervirojnangkoorn, M, McPhillips, S.E, Song, J, Mori, R.A, Holton, J.M, Weis, W.I, Brunger, A.T, Soltis, M, Lemke, H, Gonzalez, A, Sauter, N.K, Cohen, A.E, van den Bedem, H, Thorne, R.E, Fraser, J.S.
登録日2015-03-18
公開日2015-10-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.
Elife, 4, 2015
4YM5
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Crystal structure of the human nucleosome containing 6-4PP (inside)
分子名称: 144 mer-DNA, 144-mer DNA, Histone H2A type 1-B/E, ...
著者Osakabe, A, Tachiwana, H, Kagawa, W, Horikoshi, N, Matsumoto, S, Hasegawa, M, Matsumoto, N, Toga, T, Yamamoto, J, Hanaoka, F, Thoma, N.H, Sugasawa, K, Iwai, S, Kurumizaka, H.
登録日2015-03-06
公開日2015-12-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (4.005 Å)
主引用文献Structural basis of pyrimidine-pyrimidone (6-4) photoproduct recognition by UV-DDB in the nucleosome
Sci Rep, 5, 2015
6CCG
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Crystal structure MBD3 MBD domain in complex with methylated CpG DNA
分子名称: DNA, Methyl-CpG-binding domain protein 3, UNKNOWN ATOM OR ION
著者Liu, K, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
登録日2018-02-07
公開日2018-05-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analyses reveal that MBD3 is a methylated CG binder.
Febs J., 286, 2019
5VAK
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BU of 5vak by Molmil
Crystal Structure of Beta-Klotho, Domain 1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-klotho, ...
著者Lee, S, Schlessinger, J.
登録日2017-03-27
公開日2018-01-31
最終更新日2021-03-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures of beta-klotho reveal a 'zip code'-like mechanism for endocrine FGF signalling.
Nature, 553, 2018
6CE5
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BU of 6ce5 by Molmil
NMR structure of the Rous sarcoma virus matrix protein (M-domain) in the presence of myo-inositol hexakisphosphate
分子名称: virus matrix protein (M-domain)
著者Vlach, J, Saad, J.S.
登録日2018-02-11
公開日2018-11-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for targeting avian sarcoma virus Gag polyprotein to the plasma membrane for virus assembly.
J. Biol. Chem., 293, 2018
4YND
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BU of 4ynd by Molmil
The Discovery of A-893, A New Cell-Active Benzoxazinone Inhibitor of Lysine Methyltransferase SMYD2
分子名称: N-cyclohexyl-N~3~-[2-(3,4-dichlorophenyl)ethyl]-N-(2-{[(2R)-2-hydroxy-2-(3-oxo-3,4-dihydro-2H-1,4-benzoxazin-8-yl)ethyl]amino}ethyl)-beta-alaninamide, N-lysine methyltransferase SMYD2, S-ADENOSYLMETHIONINE, ...
著者Sweis, R.F, Wang, Z, Algire, M, Arrowsmith, C.H, Brown, P.J, Chiang, G.C, Guo, J, Jakob, C.G, Kennedy, S, Li, F, Soni, N.B, Vedadi, M, Pappano, W.N.
登録日2015-03-09
公開日2015-05-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Discovery of A-893, A New Cell-Active Benzoxazinone Inhibitor of Lysine Methyltransferase SMYD2.
Acs Med.Chem.Lett., 6, 2015
4KTO
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BU of 4kto by Molmil
Crystal Structure Of a Putative Isovaleryl-CoA dehydrogenase (PSI-NYSGRC-012251) from Sinorhizobium meliloti 1021
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FLAVIN-ADENINE DINUCLEOTIDE, isovaleryl-CoA dehydrogenase
著者Kumar, P.R, Ahmed, M, Attonito, J, Bhosle, R, Bonanno, J, Chamala, S, Chowdhury, S, Glenn, A.S, Hammonds, J, Hillerich, B, Himmel, D, Love, J.D, Seidel, R, Stead, M, Toro, R, Wasserman, S.R, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
登録日2013-05-20
公開日2013-06-19
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.137 Å)
主引用文献Crystal structure of a Putative Isovaleryl-CoA dehydrogenase from Sinorhizobium meliloti 1021
to be published
2PUW
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BU of 2puw by Molmil
The crystal structure of isomerase domain of glucosamine-6-phosphate synthase from Candida albicans
分子名称: 6-O-phosphono-beta-D-glucopyranose, CHLORIDE ION, isomerase domain of glutamine-fructose-6-phosphate transaminase (isomerizing)
著者Raczynska, J, Olchowy, J, Milewski, S, Rypniewski, W.
登録日2007-05-09
公開日2007-09-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.151 Å)
主引用文献The Crystal and Solution Studies of Glucosamine-6-phosphate Synthase from Candida albicans
J.Mol.Biol., 372, 2007
6CN2
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Crystal structure of zebrafish Phosphatidylinositol-4-phosphate 5- kinase alpha isoform D236N with bound ATP/Ca2+
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Phosphatidylinositol-4-phosphate 5-kinase, ...
著者Zeng, X, Sui, D, Hu, J.
登録日2018-03-07
公開日2018-03-21
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.102 Å)
主引用文献Structural insights into lethal contractural syndrome type 3 (LCCS3) caused by a missense mutation of PIP5K gamma.
Biochem. J., 475, 2018
4YU0
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BU of 4yu0 by Molmil
Crystal structure of a tetramer of GluA2 TR mutant ligand binding domains bound with glutamate at 1.26 Angstrom resolution
分子名称: DI(HYDROXYETHYL)ETHER, GLUTAMIC ACID, Glutamate receptor 2,Glutamate receptor 2, ...
著者Chebli, M, Salazar, H, Baranovic, J, Carbone, A.L, Ghisi, V, Faelber, K, Lau, A.Y, Daumke, O, Plested, A.J.R.
登録日2015-03-18
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.26 Å)
主引用文献Crystal structure of the tetrameric GluA2 ligand-binding domain in complex with glutamate at 1.26 Angstroms resolution
To Be Published
8QBX
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BU of 8qbx by Molmil
Chimeric Adenovirus-derived dodecamer
分子名称: Penton protein
著者Buzas, D, Borucu, U, Bufton, J, Kapadalakere, S.Y, Toelzer, C.
登録日2023-08-25
公開日2023-12-27
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders.
Structure, 32, 2024
4K9I
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BU of 4k9i by Molmil
CRYSTAL STRUCTURE OF probable sugar kinase protein from Rhizobium etli CFN 42 complexed with Norharmane
分子名称: ADENOSINE, DIMETHYL SULFOXIDE, Norharmane, ...
著者Malashkevich, V.N, Bhosle, R, Toro, R, Hillerich, B, Gizzi, A, Garforth, S, Kar, A, Chan, M.K, Lafluer, J, Patel, H, Matikainen, B, Chamala, S, Lim, S, Celikgil, A, Villegas, G, Evans, B, Love, J, Fiser, A, Khafizov, K, Seidel, R, Bonanno, J.B, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
登録日2013-04-19
公開日2013-05-22
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献CRYSTAL STRUCTURE OF probable sugar kinase protein from Rhizobium etli CFN 42 complexed with Norharmane
To be Published
4YUP
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Multiconformer fixed-target X-ray free electron (XFEL) model of CypA at 273 K
分子名称: Peptidyl-prolyl cis-trans isomerase A
著者Keedy, D.A, Kenner, L.R, Warkentin, M, Woldeyes, R.A, Thompson, M.C, Brewster, A.S, Van Benschoten, A.H, Baxter, E.L, Hopkins, J.B, Uervirojnangkoorn, M, McPhillips, S.E, Song, J, Mori, R.A, Holton, J.M, Weis, W.I, Brunger, A.T, Soltis, M, Lemke, H, Gonzalez, A, Sauter, N.K, Cohen, A.E, van den Bedem, H, Thorne, R.E, Fraser, J.S.
登録日2015-03-18
公開日2015-10-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.
Elife, 4, 2015
4YVD
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BU of 4yvd by Molmil
Crytsal structure of human Pleiotropic Regulator 1 (PRL1)
分子名称: CHLORIDE ION, Pleiotropic regulator 1, SODIUM ION, ...
著者Dong, A, Zeng, H, Xu, C, Tempel, W, Li, Y, He, H, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Min, J, Wu, H, Structural Genomics Consortium (SGC)
登録日2015-03-19
公開日2015-04-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crytsal structure of human Pleiotropic Regulator 1 (PRL1).
to be published
6CB8
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Cryo-EM structure of the Gasdermin A3 membrane pore
分子名称: CARDIOLIPIN, Gasdermin-A3
著者Ruan, J, Wu, H.
登録日2018-02-02
公開日2018-04-25
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Cryo-EM structure of the gasdermin A3 membrane pore.
Nature, 557, 2018
2K96
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Solution structure of the RDC-refined P2B-P3 pseudoknot from human telomerase RNA (delta U177)
分子名称: TELOMERASE RNA P2B-P3 PSEUDOKNOT
著者Kim, N.-K, Zhang, Q, Zhou, J, Theimer, C.A, Peterson, R.D, Feigon, J.
登録日2008-09-29
公開日2008-11-25
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure and Dynamics of the Wild-type Pseudoknot of Human Telomerase RNA.
J.Mol.Biol., 384, 2008
6BIM
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BU of 6bim by Molmil
Structure of NlpC1 from Trichomonas vaginalis
分子名称: Clan CA, family C40, NlpC/P60 superfamily cysteine peptidase
著者Pinheiro, J, Simoes-Barbosa, A, Goldstone, D.C.
登録日2017-11-02
公開日2018-11-07
最終更新日2019-05-29
実験手法X-RAY DIFFRACTION (1.547 Å)
主引用文献The ProtozoanTrichomonas vaginalisTargets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases.
Mbio, 9, 2018
8Q0N
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HACE1 in complex with RAC1 Q61L
分子名称: E3 ubiquitin-protein ligase HACE1, GUANOSINE-5'-TRIPHOSPHATE, Ras-related C3 botulinum toxin substrate 1, ...
著者Wolter, M, Duering, J, Dienemann, C, Lorenz, S.
登録日2023-07-28
公開日2024-01-10
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural mechanisms of autoinhibition and substrate recognition by the ubiquitin ligase HACE1.
Nat.Struct.Mol.Biol., 31, 2024
8PWL
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Cryo-EM structure of a full-length HACE1 dimer
分子名称: E3 ubiquitin-protein ligase HACE1
著者Duering, J, Wolter, M, Dienemann, C, Lorenz, S.
登録日2023-07-20
公開日2024-01-10
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (4.73 Å)
主引用文献Structural mechanisms of autoinhibition and substrate recognition by the ubiquitin ligase HACE1.
Nat.Struct.Mol.Biol., 31, 2024

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件を2024-07-10に公開中

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