Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42391 results

5HWL
DownloadVisualize
BU of 5hwl by Molmil
Human glutathione s-transferase Mu2 complexed with BDEA, monoclinic crystal form
Descriptor: GLUTATHIONE, Glutathione S-transferase Mu 2, N,N'-(butane-1,4-diyl)bis{2-[2,3-dichloro-4-(2-methylidenebutanoyl)phenoxy]acetamide}
Authors:Zhang, X, Wei, J, Wu, S, Zhang, H.P, Luo, M, Yang, X.L, Liao, F, Wang, D.Q.
Deposit date:2016-01-29
Release date:2017-11-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Human glutathione s-transferase Mu2 complexed with BDEA, monoclinic crystal form
To Be Published
3FRQ
DownloadVisualize
BU of 3frq by Molmil
Structure of the macrolide biosensor protein, MphR(A), with erythromcyin
Descriptor: CHLORIDE ION, ERYTHROMYCIN A, GLYCEROL, ...
Authors:Zheng, J, Sagar, V, Smolinsky, A, Bourke, C, LaRonde-LeBlanc, N, Cropp, T.A.
Deposit date:2009-01-08
Release date:2009-03-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structure and function of the macrolide biosensor protein, MphR(A), with and without erythromycin
J.Mol.Biol., 387, 2009
6TPF
DownloadVisualize
BU of 6tpf by Molmil
Fragment-based discovery of pyrazolopyridones as JAK1 inhibitors with excellent subtype selectivity
Descriptor: (1~{S})-2,2-bis(fluoranyl)-~{N}-[4-(3-methyl-6-oxidanylidene-2,7-dihydropyrazolo[3,4-b]pyridin-4-yl)cyclohexyl]cyclopropane-1-carboxamide, Tyrosine-protein kinase JAK1
Authors:Hansen, B.B, Jepsen, T.H, Larsen, M, Sindet, R, Vifian, T, Burhardt, M.N, Larsen, J, Seitzberg, J.G, Carnerup, M.A, Jerre, A, Molck, C, Rai, S, Nasipireddy, V.R, Griessner, A, Ritzen, A.
Deposit date:2019-12-13
Release date:2020-06-10
Last modified:2020-07-22
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Fragment-Based Discovery of Pyrazolopyridones as JAK1 Inhibitors with Excellent Subtype Selectivity.
J.Med.Chem., 63, 2020
2Q5I
DownloadVisualize
BU of 2q5i by Molmil
Crystal structure of apo S581L Glycyl-tRNA synthetase mutant
Descriptor: Glycyl-tRNA synthetase, SULFATE ION
Authors:Cader, M.Z, Ren, J, James, P.A, Bird, L.E, Talbot, K, Stammers, D.K, Oxford Protein Production Facility (OPPF)
Deposit date:2007-06-01
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of human wildtype and S581L-mutant glycyl-tRNA synthetase, an enzyme underlying distal spinal muscular atrophy.
Febs Lett., 581, 2007
5HY9
DownloadVisualize
BU of 5hy9 by Molmil
Glycosylated, disulfide-linked Knob-into-Hole Fc fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Kuglstatter, A, Stihle, M, Benz, J.
Deposit date:2016-02-01
Release date:2017-02-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural differences between glycosylated, disulfide-linked heterodimeric Knob-into-Hole Fc fragment and its homodimeric Knob-Knob and Hole-Hole side products.
Protein Eng. Des. Sel., 30, 2017
3FQZ
DownloadVisualize
BU of 3fqz by Molmil
Staphylococcus aureus dihydrofolate reductase complexed with NADPH and 2,4-diamino-5-[3-(3-methoxy-4-phenylphenyl)but-1-ynyl]-6-methylpyrimidine
Descriptor: 5-[(3S)-3-(2-methoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Trimethoprim-sensitive dihydrofolate reductase
Authors:Anderson, A.C, Frey, K.M, Liu, J, Lombardo, M.N.
Deposit date:2009-01-07
Release date:2009-03-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structures of wild-type and mutant methicillin-resistant Staphylococcus aureus dihydrofolate reductase reveal an alternate conformation of NADPH that may be linked to trimethoprim resistance.
J.Mol.Biol., 387, 2009
3T8K
DownloadVisualize
BU of 3t8k by Molmil
The crystal structure of a functionally unknown protein Lebu_0176 from Leptotrichia buccalis C-1013-b
Descriptor: uncharacterized protein
Authors:Tan, K, Bigelow, L, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-08-01
Release date:2011-08-31
Method:X-RAY DIFFRACTION (1.769 Å)
Cite:The crystal structure of a functionally unknown protein Lebu_0176 from Leptotrichia buccalis C-1013-b
To be Published
6TQB
DownloadVisualize
BU of 6tqb by Molmil
X-ray structure of Roquin ROQ domain in complex with a UCP3 CDE1 SL RNA motif
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Binas, O, Tants, J.-N, Peter, S.A, Janowski, R, Davydova, E, Braun, J, Niessing, D, Schwalbe, H, Weigand, J.E, Schlundt, A.
Deposit date:2019-12-16
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for the recognition of transiently structured AU-rich elements by Roquin.
Nucleic Acids Res., 48, 2020
4ZPH
DownloadVisualize
BU of 4zph by Molmil
Crystal Structure of the Heterodimeric HIF-2a:ARNT Complex with Proflavine
Descriptor: Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1, PROFLAVIN
Authors:Wu, D, Potluri, N, Lu, J, Kim, Y, Rastinejad, F.
Deposit date:2015-05-07
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural integration in hypoxia-inducible factors.
Nature, 524, 2015
4ZR6
DownloadVisualize
BU of 4zr6 by Molmil
Lymnaea Stagnalis Acetylcholine Binding Protein in Complex with 3-[(4E)-4-[(3-methylimidazol-4-yl)methylene]-2,3-dihydropyrrol-5-yl]pyridine
Descriptor: 3-{(4E)-4-[(1-methyl-1H-imidazol-5-yl)methylidene]-3,4-dihydro-2H-pyrrol-5-yl}pyridine, Acetylcholine-binding protein
Authors:Bobango, J, Bryant, D, Denton, T.T, Talley, T.T.
Deposit date:2015-05-11
Release date:2016-05-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-guided design and analysis of arylidene anabaseines and myosmines
To be Published
5HP4
DownloadVisualize
BU of 5hp4 by Molmil
Crystal structure bacteriohage T5 D15 flap endonuclease (D155K) pseudo-enzyme-product complex with DNA and metal ions
Descriptor: CALCIUM ION, DNA (5'-D(*GP*AP*TP*CP*TP*AP*TP*AP*TP*GP*CP*CP*AP*TP*CP*GP*G)-3'), Exodeoxyribonuclease, ...
Authors:Almalki, F.A, Zhang, J, Sedelnikova, S.E, Rafferty, J.B, Sayers, J.R, Artymiuk, P.A.
Deposit date:2016-01-20
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Direct observation of DNA threading in flap endonuclease complexes.
Nat.Struct.Mol.Biol., 23, 2016
4ZEW
DownloadVisualize
BU of 4zew by Molmil
Crystal structure of PfHAD1 in complex with glucose-6-phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Park, J, Tolia, N.H.
Deposit date:2015-04-20
Release date:2015-09-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cap-domain closure enables diverse substrate recognition by the C2-type haloacid dehalogenase-like sugar phosphatase Plasmodium falciparum HAD1.
Acta Crystallogr. D Biol. Crystallogr., 71, 2015
6LHI
DownloadVisualize
BU of 6lhi by Molmil
Quadruple mutant (N51I+C59R+S108N+I164L) plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with C466 (compound 42) and NADPH
Descriptor: 1-[3-[(4-chlorophenyl)-(phenylmethyl)amino]propoxy]-6,6-dimethyl-1,3,5-triazine-2,4-diamine, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, Bifunctional dihydrofolate reductase-thymidylate synthase, ...
Authors:Vanichtanankul, J, Vitsupakorn, D.
Deposit date:2019-12-09
Release date:2020-12-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Flexible diaminodihydrotriazine inhibitors of Plasmodium falciparum dihydrofolate reductase: Binding strengths, modes of binding and their antimalarial activities.
Eur.J.Med.Chem., 195, 2020
6LJR
DownloadVisualize
BU of 6ljr by Molmil
human galectin-16 R55N/H57R
Descriptor: Galectin-16, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Su, J.
Deposit date:2019-12-17
Release date:2020-10-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Human galectin-16 has a pseudo ligand binding site and plays a role in regulating c-Rel-mediated lymphocyte activity.
Biochim Biophys Acta Gen Subj, 1865, 2020
5HQE
DownloadVisualize
BU of 5hqe by Molmil
Crystal structure of human dihydroorotate dehydrogenase (DHODH) with compound 18T
Descriptor: ACETATE ION, Dihydroorotate dehydrogenase (quinone), mitochondrial, ...
Authors:Huang, J, Wu, D, Lu, Q.
Deposit date:2016-01-21
Release date:2016-07-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structure of human dihydroorotate dehydrogenase (DHODH) with 18T at 1.62 A resolution
To Be Published
6TTZ
DownloadVisualize
BU of 6ttz by Molmil
Structure of the ClpP:ADEP4-complex from Staphylococcus aureus (open state)
Descriptor: ATP-dependent Clp protease proteolytic subunit, N-[(2S)-3-(3,5-difluorophenyl)-1-[[(3S,9S,13S,15R,19S,22S)-15,19-dimethyl-2,8,12,18,21-pentaoxo-11-oxa-1,7,17,20-tetrazatetracyclo[20.4.0.03,7.013,17]hexacosan-9-yl]amino]-1-oxopropan-2-yl]heptanamide
Authors:Malik, I.T, Pereira, R, Vielberg, M.-T, Mayer, C, Straetener, J, Thomy, D, Famulla, K, Castro, H.C, Sass, P, Groll, M, Broetz-Oesterheldt, H.
Deposit date:2019-12-30
Release date:2020-03-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Functional Characterisation of ClpP Mutations Conferring Resistance to Acyldepsipeptide Antibiotics in Firmicutes.
Chembiochem, 21, 2020
3FWX
DownloadVisualize
BU of 3fwx by Molmil
The crystal structure of the peptide deformylase from Vibrio cholerae O1 biovar El Tor str. N16961
Descriptor: Peptide deformylase, ZINC ION
Authors:Zhang, R, Zhou, M, Stam, J, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-01-19
Release date:2009-03-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of the peptide deformylase from Vibrio cholerae O1 biovar El Tor
To be Published
2PLJ
DownloadVisualize
BU of 2plj by Molmil
Crystal structure of lysine/ornithine decarboxylase complexed with putrescine from Vibrio vulnificus
Descriptor: (4-{[(4-AMINOBUTYL)AMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, MAGNESIUM ION, lysine/ornithine decarboxylase
Authors:Lee, J, Goldsmith, E.J, Phillips, M.A.
Deposit date:2007-04-19
Release date:2007-07-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Phylogenetic diversity and the structural basis of substrate specificity in the beta/alpha-barrel fold basic amino acid decarboxylases.
J.Biol.Chem., 282, 2007
4ZR5
DownloadVisualize
BU of 4zr5 by Molmil
Soluble rabbit neprilysin in complex with phosphoramidon
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN, ...
Authors:Labiuk, S.L, Grochulski, P, Sygusch, J.
Deposit date:2015-05-11
Release date:2016-06-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.8016 Å)
Cite:Structures of soluble rabbit neprilysin complexed with phosphoramidon or thiorphan.
Acta Crystallogr.,Sect.F, 75, 2019
2PM7
DownloadVisualize
BU of 2pm7 by Molmil
Crystal structure of yeast Sec13/31 edge element of the COPII vesicular coat, selenomethionine version
Descriptor: Protein transport protein SEC13, Protein transport protein SEC31
Authors:Goldberg, J, Fath, S, Mancias, J.D, Bi, X.
Deposit date:2007-04-20
Release date:2007-07-03
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure and Organization of Coat Proteins in the COPII Cage.
Cell(Cambridge,Mass.), 129, 2007
3T7T
DownloadVisualize
BU of 3t7t by Molmil
Crystal structure of complex of SAH and BVU_3255, a methyltransferase from Bacteroides vulgatus ATCC 8482
Descriptor: Putative methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kumar, V, Sivaraman, J.
Deposit date:2011-07-31
Release date:2011-10-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural characterization of BVU_3255, a methyltransferase from human intestine antibiotic resistant pathogen Bacteroides vulgatus
J.Struct.Biol., 2011
3TBM
DownloadVisualize
BU of 3tbm by Molmil
Crystal structure of a type 4 CDGSH iron-sulfur protein.
Descriptor: FE2/S2 (INORGANIC) CLUSTER, L(+)-TARTARIC ACID, NONAETHYLENE GLYCOL, ...
Authors:Lin, J, Zhang, L, Ye, K.
Deposit date:2011-08-07
Release date:2011-10-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.797 Å)
Cite:Structure and Molecular Evolution of CDGSH Iron-Sulfur Domains.
Plos One, 6, 2011
4ZGN
DownloadVisualize
BU of 4zgn by Molmil
Structure Cdc123 complexed with the C-terminal domain of eIF2gamma
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division cycle protein 123, Eukaryotic translation initiation factor 2 subunit gamma, ...
Authors:Panvert, M, Dubiez, E, Arnold, L, Perez, J, Seufert, W, Mechulam, Y, Schmitt, E.
Deposit date:2015-04-23
Release date:2015-09-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Cdc123, a Cell Cycle Regulator Needed for eIF2 Assembly, Is an ATP-Grasp Protein with Unique Features.
Structure, 23, 2015
6TR2
DownloadVisualize
BU of 6tr2 by Molmil
Pre-folded structures govern folding pathways of human telomeric G-quadruplexes
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')
Authors:Wang, B, Frelih, T, Plavec, J, Sket, P.
Deposit date:2019-12-17
Release date:2020-01-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Pre-folded structures govern folding pathways of human telomeric G-quadruplexes.
Nucleic Acids Res., 48, 2020
6TR8
DownloadVisualize
BU of 6tr8 by Molmil
Corynebacterium diphtheriae methionine sulfoxide reductase B (MsrB) solution structure - reduced form
Descriptor: Peptide-methionine (R)-S-oxide reductase, ZINC ION
Authors:Volkov, A.N, Tossounian, M.A, Buts, L, Messens, J.
Deposit date:2019-12-18
Release date:2020-02-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Methionine sulfoxide reductase B fromCorynebacterium diphtheriaecatalyzes sulfoxide reduction via an intramolecular disulfide cascade.
J.Biol.Chem., 295, 2020

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon