Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42391 results

2PMR
DownloadVisualize
BU of 2pmr by Molmil
Crystal structure of a protein of unknown function from Methanobacterium thermoautotrophicum
Descriptor: Uncharacterized protein
Authors:Bonanno, J.B, Freeman, J, Bain, K.T, Wu, B, Ozyurt, S, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-04-23
Release date:2007-05-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Crystal structure of a protein of unknown function from Methanobacterium thermoautotrophicum.
To be Published
5HKN
DownloadVisualize
BU of 5hkn by Molmil
Crystal structure de novo designed fullerene organizing protein complex with fullerene
Descriptor: (C_{60}-I_{h})[5,6]fullerene, fullerene organizing protein
Authors:Paul, J, Acharya, R, Kim, K.-H, Kim, Y.H, Kim, N.H, Grigoryan, G, DeGardo, W.F.
Deposit date:2016-01-14
Release date:2016-05-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.761 Å)
Cite:Protein-directed self-assembly of a fullerene crystal.
Nat Commun, 7, 2016
6LBU
DownloadVisualize
BU of 6lbu by Molmil
Crystal structure of yeast Stn1 and Ten1
Descriptor: KLLA0C11825p, KLLA0E09417p
Authors:Ge, Y, Wu, Z, Wu, J, Lei, M.
Deposit date:2019-11-14
Release date:2020-07-15
Last modified:2020-08-19
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into telomere protection and homeostasis regulation by yeast CST complex.
Nat.Struct.Mol.Biol., 27, 2020
3F4K
DownloadVisualize
BU of 3f4k by Molmil
Crystal structure of a probable methyltransferase from Bacteroides thetaiotaomicron. Northeast Structural Genomics target BtR309.
Descriptor: Putative methyltransferase
Authors:Seetharaman, J, Lew, S, Wang, H, Janjua, H, Foote, E.L, Xiao, R, Nair, R, Everett, J.K, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-10-31
Release date:2008-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a probable methyltransferase from Bacteroides thetaiotaomicron. Northeast Structural Genomics target BtR309.
To be Published
5HD4
DownloadVisualize
BU of 5hd4 by Molmil
Dissecting Therapeutic Resistance to ERK Inhibition Rat Wild Type SCH772984 in complex with (3R)-1-(2-oxo-2-{4-[4-(pyrimidin-2-yl)phenyl]piperazin-1-yl}ethyl)-N-[3-(pyridin-4-yl)-2H-indazol-5-yl]pyrrolidine-3-carboxamide
Descriptor: (3R)-1-(2-oxo-2-{4-[4-(pyrimidin-2-yl)phenyl]piperazin-1-yl}ethyl)-N-[3-(pyridin-4-yl)-2H-indazol-5-yl]pyrrolidine-3-carboxamide, DIMETHYL SULFOXIDE, Mitogen-activated protein kinase 1, ...
Authors:Jha, S, Morris, E.J, Hruza, A, Mansueto, M.S, Schroeder, G, Arbanas, J, McMasters, D, Restaino, C.R, Dayananth, R, Black, S, Elsen, N.L, Mannarino, A, Cooper, A, Fawell, S, Zawel, L, Jayaraman, L, Samatar, A.A.
Deposit date:2016-01-04
Release date:2016-02-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Dissecting Therapeutic Resistance to ERK Inhibition.
Mol.Cancer Ther., 15, 2016
5HDI
DownloadVisualize
BU of 5hdi by Molmil
Structural characterization of CYP144A1, a Mycobacterium tuberculosis cytochrome P450
Descriptor: Cytochrome P450 144, PROTOPORPHYRIN IX CONTAINING FE
Authors:Chenge, J, Driscoll, M.D, McLean, K.J, Munro, A.W, Leys, D.
Deposit date:2016-01-05
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural characterization of CYP144A1 - a cytochrome P450 enzyme expressed from alternative transcripts in Mycobacterium tuberculosis.
Sci Rep, 6, 2016
3FMP
DownloadVisualize
BU of 3fmp by Molmil
Crystal structure of the nucleoporin Nup214 in complex with the DEAD-box helicase Ddx19
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DDX19B, Nuclear pore complex protein Nup214
Authors:Napetschnig, J, Debler, E.W, Blobel, G, Hoelz, A.
Deposit date:2008-12-22
Release date:2009-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Structural and functional analysis of the interaction between the nucleoporin Nup214 and the DEAD-box helicase Ddx19.
Proc.Natl.Acad.Sci.USA, 106, 2009
3F5M
DownloadVisualize
BU of 3f5m by Molmil
Crystal Structure of ATP-Bound Phosphofructokinase from Trypanosoma brucei
Descriptor: 6-phospho-1-fructokinase (ATP-dependent phosphofructokinase), ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
Authors:McNae, I.W, Martinez-Oyanedel, J, Keillor, J.W, Michels, P.A.M, Fothergill-Gilmore, L.A, Walkinshaw, M.D.
Deposit date:2008-11-04
Release date:2008-11-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The crystal structure of ATP-bound phosphofructokinase from Trypanosoma brucei reveals conformational transitions different from those of other phosphofructokinases.
J.Mol.Biol., 385, 2009
6LD1
DownloadVisualize
BU of 6ld1 by Molmil
Zika NS5 polymerase domain
Descriptor: 1,2-ETHANEDIOL, RNA-directed RNA polymerase NS5, ZINC ION
Authors:El Sahili, A, Lescar, J.
Deposit date:2019-11-20
Release date:2020-08-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Non-nucleoside Inhibitors of Zika Virus RNA-Dependent RNA Polymerase.
J.Virol., 94, 2020
3FNJ
DownloadVisualize
BU of 3fnj by Molmil
Crystal structure of the full-length lp_1913 protein from Lactobacillus plantarum, Northeast Structural Genomics Consortium Target LpR140
Descriptor: protein lp_1913
Authors:Seetharaman, J, Chen, Y, Forouhar, F, Sahdev, S, Janjua, H, Xiao, R, Ciccosanti, C, Foote, E.L, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-12-25
Release date:2009-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the full-length lp_1913 protein from Lactobacillus plantarum, Northeast Structural Genomics Consortium Target LpR140
To be Published
3F6J
DownloadVisualize
BU of 3f6j by Molmil
F17a-G lectin domain with bound GlcNAc(beta1-3)Gal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-methyl beta-D-galactopyranoside, F17a-G
Authors:Buts, L, de Boer, A, Olsson, J.D.M, Jonckheere, W, De Kerpel, M, De Genst, E, Guerardel, Y, Willaert, R, Wyns, L, Wuhrer, M, Oscarson, S, De Greve, H, Bouckaert, J.
Deposit date:2008-11-06
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli
Biology, 2, 2013
4Z54
DownloadVisualize
BU of 4z54 by Molmil
High Resolution Human Septin3 GTPase domain with alpha-zero helix in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Neuronal-specific septin-3
Authors:Valadares, N.F, Macedo, J.N, Pereira, H.M, Brandao-Neto, J, Matos, S.O, Leonardo, D.A, Araujo, A.P.U, Garratt, R.C.
Deposit date:2015-04-02
Release date:2016-04-06
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:A complete compendium of crystal structures for the human SEPT3 subgroup reveals functional plasticity at a specific septin interface
Iucrj, 2020
4Z2C
DownloadVisualize
BU of 4z2c by Molmil
Quinolone(Moxifloxacin)-DNA cleavage complex of gyrase from S. pneumoniae
Descriptor: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Laponogov, I, Veselkov, D.A, Pan, X.-S, Selvarajah, J, Crevel, I.M.-T, Fisher, L.M, Sanderson, M.R.
Deposit date:2015-03-29
Release date:2016-09-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae
To Be Published
4RXT
DownloadVisualize
BU of 4rxt by Molmil
Crystal structure of carbohydrate transporter solute binding protein Arad_9553 from Agrobacterium Radiobacter, Target EFI-511541, in complex with D-arabinose
Descriptor: Sugar ABC transporter, alpha-L-arabinopyranose
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Morisco, L.L, Wasserman, S.R, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Hillerich, B, Siedel, R.D, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-12-11
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal Structure of Sugar Binding Transporter Arad_9553 from Agrobacterium Radiobacter, Target Efi-511541
To be Published
6LEU
DownloadVisualize
BU of 6leu by Molmil
Quadruple mutant (N51I+C59R+S108N+I164L) plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with compound 42 and NADPH
Descriptor: 1-[3-[(4-chlorophenyl)-(phenylmethyl)amino]propoxy]-6,6-dimethyl-1,3,5-triazine-2,4-diamine, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, Bifunctional dihydrofolate reductase-thymidylate synthase, ...
Authors:Vanichtanankul, J, Vitsupakorn, D.
Deposit date:2019-11-27
Release date:2020-12-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Flexible diaminodihydrotriazine inhibitors of Plasmodium falciparum dihydrofolate reductase: Binding strengths, modes of binding and their antimalarial activities.
Eur.J.Med.Chem., 195, 2020
5HFA
DownloadVisualize
BU of 5hfa by Molmil
Crystal structure of human acetylcholinesterase in complex with paraoxon and 2-PAM
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Franklin, M.F, Rudolph, M.J, Ginter, C, Cassidy, M.S, Cheung, J.
Deposit date:2016-01-06
Release date:2016-06-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Structures of paraoxon-inhibited human acetylcholinesterase reveal perturbations of the acyl loop and the dimer interface.
Proteins, 84, 2016
6T4S
DownloadVisualize
BU of 6t4s by Molmil
3C-like protease from Southampton virus complexed with FMOPL000013a.
Descriptor: 2-(trifluoromethoxy)benzoic acid, Genome polyprotein
Authors:Guo, J, Cooper, J.B.
Deposit date:2019-10-14
Release date:2020-08-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors.
J Struct Biol X, 4, 2020
6T5D
DownloadVisualize
BU of 6t5d by Molmil
3C-like protease from Southampton virus complexed with FMOPL000014a.
Descriptor: 2-phenylmethoxyaniline, Genome polyprotein
Authors:Guo, J, Cooper, J.B.
Deposit date:2019-10-16
Release date:2020-08-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors.
J Struct Biol X, 4, 2020
3FE2
DownloadVisualize
BU of 3fe2 by Molmil
Human DEAD-BOX RNA helicase DDX5 (P68), conserved domain I in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, Probable ATP-dependent RNA helicase DDX5, ...
Authors:Karlberg, T, Siponen, M.I, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Kotenyova, T, Lehtio, L, Moche, M, Nilsson, M.E, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Weigelt, J, Welin, M, Wikstrom, M, Wisniewska, M, Schuler, H, Structural Genomics Consortium (SGC)
Deposit date:2008-11-27
Release date:2008-12-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Comparative Structural Analysis of Human DEAD-Box RNA Helicases
Plos One, 5, 2010
4RYL
DownloadVisualize
BU of 4ryl by Molmil
Human Protein Arginine Methyltransferase 3 in complex with 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea
Descriptor: 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea, PRMT3 protein, UNKNOWN ATOM OR ION
Authors:Dong, A, Dobrovetsky, E, Kaniskan, H.U, Szewczyk, M, Yu, Z, Eram, M.S, Yang, X, Schmidt, K, Luo, X, Dai, M, He, F, Zang, I, Lin, Y, Kennedy, S, Li, F, Tempel, W, Smil, D, Min, S.J, Landon, M, Lin-Jones, J, Huang, X.P, Roth, B.L, Schapira, M, Atadja, P, Barsyte-Lovejoy, D, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Brown, P.J, Zhao, K, Jin, J, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-12-15
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Potent, Selective and Cell-Active Allosteric Inhibitor of Protein Arginine Methyltransferase 3 (PRMT3).
Angew.Chem.Int.Ed.Engl., 54, 2015
4S3A
DownloadVisualize
BU of 4s3a by Molmil
IspG in complex with Intermediate I
Descriptor: (3S)-1,3-dihydroxy-4-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}-2-methylbut-2-ylium, carbokation intermediate, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, ...
Authors:Quitterer, F, Frank, A, Wang, K, Rao, G, O'Dowd, B, Li, J, Guerra, F, Abdel-Azeim, S, Bacher, A, Eppinger, J, Oldfield, E, Groll, M.
Deposit date:2015-01-26
Release date:2015-05-06
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Atomic-Resolution Structures of Discrete Stages on the Reaction Coordinate of the [Fe4S4] Enzyme IspG (GcpE).
J.Mol.Biol., 427, 2015
4Z53
DownloadVisualize
BU of 4z53 by Molmil
Quinolone(Trovafloxacin)-DNA cleavage complex of topoisomerase IV from S. pneumoniae
Descriptor: DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A, E-site DNA, MAGNESIUM ION, ...
Authors:Laponogov, I, Veselkov, D.A, Pan, X.-S, Selvarajah, J, Crevel, I.M.-T, Fisher, L.M, Sanderson, M.R.
Deposit date:2015-04-02
Release date:2016-09-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.26 Å)
Cite:Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae
To Be Published
5HQF
DownloadVisualize
BU of 5hqf by Molmil
DNA duplex containing a ribonolactone lesion
Descriptor: DNA (5'-D(*CP*GP*CP*TP*CP*(RIB)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3')
Authors:Zalesak, J, Constant, J.F, Jourdan, M.
Deposit date:2016-01-21
Release date:2016-09-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Solution Structure of DNA Featuring Clustered 2'-Deoxyribonolactone and 8-Oxoguanine Lesions.
Biochemistry, 55, 2016
6KY9
DownloadVisualize
BU of 6ky9 by Molmil
Crystal structure of ASFV dUTPase and UMP complex
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, E165R
Authors:Li, C, Chai, Y, Song, H, Qi, J, Sun, Y, Gao, G.F.
Deposit date:2019-09-17
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of African Swine Fever Virus dUTPase Reveals a Potential Drug Target.
Mbio, 10, 2019
5HRF
DownloadVisualize
BU of 5hrf by Molmil
The crystal structure of AsfvPolX: DNA5: dGTP ternary complex
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*GP*AP*TP*CP*CP*T*)-3'), DNA polymerase beta-like protein, ...
Authors:Chen, Y.Q, Zhang, J, Gan, J.H.
Deposit date:2016-01-23
Release date:2017-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon