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PDB: 42254 results

5MZH
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Crystal structure of ODA16 from Chlamydomonas reinhardtii
Descriptor: Dynein assembly factor with WDR repeat domains 1, SULFATE ION
Authors:Lorentzen, E, Taschner, M, Basquin, J, Mourao, A.
Deposit date:2017-01-31
Release date:2017-03-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.398 Å)
Cite:Structural basis of outer dynein arm intraflagellar transport by the transport adaptor protein ODA16 and the intraflagellar transport protein IFT46.
J. Biol. Chem., 292, 2017
5NAI
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mono-Zinc VIM-5 metallo-beta-lactamase in complex with (1-chloro-4-hydroxyisoquinoline-3-carbonyl)-D-tryptophan (Compound 1)
Descriptor: (2~{R})-2-[(1-chloranyl-4-oxidanyl-isoquinolin-3-yl)carbonylamino]-3-(1~{H}-indol-3-yl)propanoic acid, Class B metallo-beta-lactamase, FLUORIDE ION, ...
Authors:Li, G.-B, Brem, J, McDonough, M.A, Schofield, C.J.
Deposit date:2017-02-28
Release date:2017-05-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystallographic analyses of isoquinoline complexes reveal a new mode of metallo-beta-lactamase inhibition.
Chem. Commun. (Camb.), 53, 2017
2W6G
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Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration: Hydration State 3.
Descriptor: ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL, ATP SYNTHASE SUBUNIT BETA, ...
Authors:Sanchez-Weatherby, J, Felisaz, F, Gobbo, A, Huet, J, Ravelli, R.B.G, Bowler, M.W, Cipriani, F.
Deposit date:2008-12-18
Release date:2009-10-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (6 Å)
Cite:Improving Diffraction by Humidity Control: A Novel Device Compatible with X-Ray Beamlines.
Acta Crystallogr.,Sect.D, 65, 2009
5AR8
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BU of 5ar8 by Molmil
RIP2 Kinase Catalytic Domain (1 - 310) complex with Biphenylsulfonamide
Descriptor: 2,6-bis(fluoranyl)-N-[3-[5-[2-[(3-methylsulfonylphenyl)amino]pyrimidin-4-yl]-2-morpholin-4-yl-1,3-thiazol-4-yl]phenyl]benzenesulfonamide, RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2
Authors:Charnley, A.K, Convery, M.A, Lakdawala Shah, A, Jones, E, Hardwicke, P, Bridges, A, Votta, B.J, Gough, P.J, Marquis, R.W, Bertin, J, Casillas, L.
Deposit date:2015-09-24
Release date:2015-10-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Crystal Structures of Human Rip2 Kinase Catalytic Domain Complexed with ATP-Competitive Inhibitors: Foundations for Understanding Inhibitor Selectivity.
Bioorg.Med.Chem., 23, 2015
4A8C
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BU of 4a8c by Molmil
Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with a binding peptide
Descriptor: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ
Authors:Malet, H, Canellas, F, Sawa, J, Yan, J, Thalassinos, K, Ehrmann, M, Clausen, T, Saibil, H.R.
Deposit date:2011-11-20
Release date:2012-01-11
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Newly Folded Substrates Inside the Molecular Cage of the Htra Chaperone Degq
Nat.Struct.Mol.Biol., 19, 2012
5BNO
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BU of 5bno by Molmil
Crystal structure of human enterovirus D68 in complex with 6'SLN
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Liu, Y, Sheng, J, Meng, G, Xiao, C, Rossmann, M.G.
Deposit date:2015-05-26
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Sialic acid-dependent cell entry of human enterovirus D68.
Nat Commun, 6, 2015
5N2Z
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Thermolysin in complex with inhibitor JC286
Descriptor: CALCIUM ION, DIMETHYL SULFOXIDE, Thermolysin, ...
Authors:Cramer, J, Krimmer, S.G, Heine, A, Klebe, G.
Deposit date:2017-02-08
Release date:2017-06-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Paying the Price of Desolvation in Solvent-Exposed Protein Pockets: Impact of Distal Solubilizing Groups on Affinity and Binding Thermodynamics in a Series of Thermolysin Inhibitors.
J. Med. Chem., 60, 2017
5H0I
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BU of 5h0i by Molmil
Structure of OaAEP1 asparaginyl peptide ligase in its proenzyme form
Descriptor: Asparaginyl endopeptidase
Authors:Yang, R, Wong, Y.H, Lescar, J, Wu, B.
Deposit date:2016-10-04
Release date:2017-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Engineering a Catalytically Efficient Recombinant Protein Ligase
J. Am. Chem. Soc., 139, 2017
5H0S
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BU of 5h0s by Molmil
EM Structure of VP1A and VP1B
Descriptor: VP1
Authors:Li, X, Zhou, N, Xu, B, Chen, W, Zhu, B, Wang, X, Wang, J, Liu, H, Cheng, L.
Deposit date:2016-10-06
Release date:2017-01-25
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Near-Atomic Resolution Structure Determination of a Cypovirus Capsid and Polymerase Complex Using Cryo-EM at 200kV
J. Mol. Biol., 429, 2017
5N3V
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BU of 5n3v by Molmil
Thermolysin in complex with inhibitor JC292
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Cramer, J, Krimmer, S.G, Heine, A, Klebe, G.
Deposit date:2017-02-09
Release date:2017-06-21
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Paying the Price of Desolvation in Solvent-Exposed Protein Pockets: Impact of Distal Solubilizing Groups on Affinity and Binding Thermodynamics in a Series of Thermolysin Inhibitors.
J. Med. Chem., 60, 2017
5N70
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BU of 5n70 by Molmil
CRYSTAL STRUCTURE OF MATURE CATHEPSIN D FROM THE TICK IXODES RICINUS (IRCD1) IN COMPLEX WITH THE N-TERMINAL OCTAPEPTIDE OF THE PROPEPTID
Descriptor: ALA-PHE-ARG-ILE-PRO-LEU-THR-ARG, Putative cathepsin d
Authors:Brynda, J, Hanova, I, Hobizalova, R, Mares, M.
Deposit date:2017-02-17
Release date:2017-12-27
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Novel Structural Mechanism of Allosteric Regulation of Aspartic Peptidases via an Evolutionarily Conserved Exosite.
Cell Chem Biol, 25, 2018
3JZR
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BU of 3jzr by Molmil
Human MDM2 liganded with a 12mer peptide inhibitor (pDI6W)
Descriptor: E3 ubiquitin-protein ligase Mdm2, pDI6W peptide (12mer)
Authors:Schonbrunn, E, Phan, J.
Deposit date:2009-09-24
Release date:2009-11-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based design of high affinity peptides inhibiting the interaction of p53 with MDM2 and MDMX.
J.Biol.Chem., 285, 2010
4PQ8
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BU of 4pq8 by Molmil
Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR465
Descriptor: CHLORIDE ION, DESIGNED PROTEIN OR465
Authors:Vorobiev, S, Parmeggiani, F, Seetharaman, J, Janjua, H, Xiao, R, Maglaqui, M, Park, K, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J, Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-02-28
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.833 Å)
Cite:Crystal Structure of Engineered Protein OR465.
To be Published
2WP8
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BU of 2wp8 by Molmil
yeast rrp44 nuclease
Descriptor: CHLORIDE ION, EXOSOME COMPLEX COMPONENT RRP45, EXOSOME COMPLEX COMPONENT SKI6, ...
Authors:Basquin, J, Bonneau, F, Ebert, J, Lorentzen, E, Conti, E.
Deposit date:2009-08-03
Release date:2009-11-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Yeast Exosome Functions as a Macromolecular Cage to Channel RNA Substrates for Degradation.
Cell(Cambridge,Mass.), 139, 2009
4PSJ
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BU of 4psj by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium (NESG) Target OR464.
Descriptor: OR464
Authors:Vorobiev, S, Parmeggiani, F, Seetharaman, J, Huang, P.-S, Janjua, H, Xiao, R, Maglaqui, M, Park, K, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J, Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-03-07
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.992 Å)
Cite:Crystal Structure of Engineered Protein OR464.
To be Published
5N55
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BU of 5n55 by Molmil
mono-Zinc VIM-5 metallo-beta-lactamase in complex with (1-chloro-4-hydroxyisoquinoline-3-carbonyl)-L-tryptophan (Compound 2)
Descriptor: (1-chloro-4-hydroxyisoquinoline-3-carbonyl)-L-tryptophan, Class B metallo-beta-lactamase, ZINC ION
Authors:Li, G.-B, Brem, J, McDonough, M.A, Schofield, C.J.
Deposit date:2017-02-13
Release date:2017-05-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystallographic analyses of isoquinoline complexes reveal a new mode of metallo-beta-lactamase inhibition.
Chem. Commun. (Camb.), 53, 2017
5H4Z
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BU of 5h4z by Molmil
Crystal structure of S202G mutant of human SYT-5 C2A domain
Descriptor: CALCIUM ION, CHLORIDE ION, Synaptotagmin-5
Authors:Qiu, X, Ge, J, Yan, X, Gao, Y, Teng, M, Niu, L.
Deposit date:2016-11-02
Release date:2016-11-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural analysis of Ca(2+)-binding pocket of synaptotagmin 5 C2A domain
Int. J. Biol. Macromol., 95, 2017
4PRP
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BU of 4prp by Molmil
Crystal structure of TK3 TCR-HLA-B*35:01-HPVG-Q5 complex
Descriptor: Beta-2-microglobulin, Epstein-Barr nuclear antigen 1, MHC class I antigen, ...
Authors:Yu Chih, L, Rossjohn, J, Gras, S.
Deposit date:2014-03-06
Release date:2014-04-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Molecular Basis for the Interplay between T Cells, Viral Mutants, and Human Leukocyte Antigen Micropolymorphism.
J.Biol.Chem., 289, 2014
5AML
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BU of 5aml by Molmil
Three dimensional structure of human carbonic anhydrase II in complex with 2-(But-2-yn-1-ylsulfamoyl)-4-sulfamoylbenzoic acid
Descriptor: 2-(BUT-2-YN-1-YLSULFAMOYL)-4-SULFAMOYLBENZOIC ACID, CARBONIC ANHYDRASE 2, ZINC ION
Authors:Leitans, J, Tars, K, Zalubovskis, R.
Deposit date:2015-03-10
Release date:2015-04-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:X-Ray Crystallography-Promoted Drug Design of Carbonic Anhydrase Inhibitors.
Chem.Commun.(Camb.), 51, 2015
5N7N
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BU of 5n7n by Molmil
CRYSTAL STRUCTURE OF CATHEPSIN D ZYMOGEN FROM THE TICK IXODES RICINUS (IRCD1)
Descriptor: AMMONIUM ION, Putative cathepsin d, SULFATE ION
Authors:Brynda, J, Hanova, I, Hobizalova, R, Mares, M.
Deposit date:2017-02-21
Release date:2017-12-27
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Novel Structural Mechanism of Allosteric Regulation of Aspartic Peptidases via an Evolutionarily Conserved Exosite.
Cell Chem Biol, 25, 2018
4PTS
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BU of 4pts by Molmil
Crystal structure of a glutathione transferase from Gordonia bronchialis DSM 43247, target EFI-507405
Descriptor: glutathione S-transferase
Authors:Kim, J, Toro, R, Bhosle, R, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-03-11
Release date:2014-04-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Crystal structure of a glutathione transferase from Gordonia bronchialis DSM 43247, target EFI-507405
To be Published
5N4T
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BU of 5n4t by Molmil
VIM-2 metallo-beta-lactamase in complex with ((S)-3-mercapto-2-methylpropanoyl)-L-tryptophan (Compound 4)
Descriptor: (2~{S})-3-(1~{H}-indol-3-yl)-2-[[(2~{S})-2-methyl-3-sulfanyl-propanoyl]amino]propanoic acid, BENZOIC ACID, Beta-lactamase VIM-2, ...
Authors:Li, G.-B, Brem, J, McDonough, M.A, Schofield, C.J.
Deposit date:2017-02-11
Release date:2017-05-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Crystallographic analyses of isoquinoline complexes reveal a new mode of metallo-beta-lactamase inhibition.
Chem. Commun. (Camb.), 53, 2017
4AGT
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BU of 4agt by Molmil
Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with Fuc1-6GlcNAc.
Descriptor: FUCOSE-SPECIFIC LECTIN FLEA, SODIUM ION, alpha-L-fucopyranose, ...
Authors:Houser, J, Komarek, J, Kostlanova, N, Lahmann, M, Cioci, G, Varrot, A, Imberty, A, Wimmerova, M.
Deposit date:2012-01-31
Release date:2013-02-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent
Acta Crystallogr.,Sect.D, 71, 2015
4AHA
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BU of 4aha by Molmil
Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with fucosylated monosaccharides (Fuc1-2Gal, Fuc1- 3GlcNAc, Fuc1-4GlcNAc and Fuc1-6GlcNAc)
Descriptor: Fucose-specific lectin, alpha-L-fucopyranose, alpha-L-fucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Houser, J, Komarek, J, Kostlanova, N, Lahmann, M, Cioci, G, Varrot, A, Imberty, A, Wimmerova, M.
Deposit date:2012-02-06
Release date:2013-02-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent
Acta Crystallogr.,Sect.D, 71, 2015
3JCB
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BU of 3jcb by Molmil
Structure of Simian Immunodeficiency Virus Envelope Spikes bound with CD4 and Monoclonal Antibody 36D5
Descriptor: Antibody 36D5 heavy chain, Antibody 36D5 light chain, Envelope glycoprotein gp120, ...
Authors:Hu, G, Liu, J, Roux, K, Taylor, K.A.
Deposit date:2015-11-25
Release date:2017-05-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY
Cite:Structure of Simian Immunodeficiency Virus Envelope Spikes Bound with CD4 and Monoclonal Antibody 36D5.
J. Virol., 91, 2017

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