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PDB: 17892 results

6EOM
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BU of 6eom by Molmil
Structure of DPP III from Caldithrix abyssi
Descriptor: 1,2-ETHANEDIOL, ALANINE, CHLORIDE ION, ...
Authors:Sabljic, I.
Deposit date:2017-10-10
Release date:2018-03-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:The first dipeptidyl peptidase III from a thermophile: Structural basis for thermal stability and reduced activity.
PLoS ONE, 13, 2018
6ZOI
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BU of 6zoi by Molmil
A lid blocking mechanism of a cone snail toxin revealed at the atomic level
Descriptor: Conknunitzin-C3 mutante
Authors:Saikia, C, Altman-Gueta, H, Dym, O, Frolow, F, Gurevitz, M, Gordon, D, Reuveny, E, Karbat, I.
Deposit date:2020-07-07
Release date:2021-07-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:A lid blocking mechanism of a cone snail toxin revealed at the atomic level
To Be Published
6ZRE
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BU of 6zre by Molmil
Deciphering the role of the channel constrictions in the opening mechanism of MexAB-OprM efflux pump from Pseudomonas aeruginosa
Descriptor: Outer membrane protein OprM, PALMITIC ACID, SULFATE ION, ...
Authors:Ntsogo Enguene, Y.V, Monlezun, L, Ma, M, Garnier, C, Lascombe, M.B, Salem, M, Guenard, S, Plesiat, P, Llanes, C, Phan, G, Broutin, I.
Deposit date:2020-07-13
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Deciphering the role of OprM constrictions in the opening mechanism of the MexAB-OprM efflux pump from Pseudomonas aeruginosa.
To Be Published
6S3K
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BU of 6s3k by Molmil
KimA from Bacillus subtilis in inward-facing, occluded state
Descriptor: APC family permease, POTASSIUM ION
Authors:Tascon, I, Sousa, J.S, Vonck, J, Haenelt, I.
Deposit date:2019-06-25
Release date:2020-02-12
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of proton-coupled potassium transport in the KUP family.
Nat Commun, 11, 2020
8G5B
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BU of 8g5b by Molmil
Influenza A H3N2 X-31 Hemagglutinin in complex with FL-1061
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FL-1061 heavy chain, FL-1061 light chain, ...
Authors:Windsor, I.W, Thornlow, D, Schmidt, A.G.
Deposit date:2023-02-12
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Fabs elicited by hyperglycosylated immunogen
To Be Published
6RHG
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BU of 6rhg by Molmil
Structure of Chloroflexus aggregans Cagg_3753 LOV domain
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, Multi-sensor hybrid histidine kinase
Authors:Nazarenko, V.V, Remeeva, A, Yudenko, A, Kovalev, K, Gordeliy, V, Gushchin, I.
Deposit date:2019-04-19
Release date:2019-05-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:A thermostable flavin-based fluorescent protein from Chloroflexus aggregans: a framework for ultra-high resolution structural studies.
Photochem. Photobiol. Sci., 18, 2019
4R8F
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BU of 4r8f by Molmil
Crystal structure of yeast aminopeptidase 1 (Ape1)
Descriptor: Vacuolar aminopeptidase 1
Authors:Su, M.-Y, Chang, C.-I.
Deposit date:2014-09-02
Release date:2015-08-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of yeast Ape1 and its role in autophagic vesicle formation.
Autophagy, 11, 2015
8G5X
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BU of 8g5x by Molmil
Structure of the Class II Fructose-1,6-Bisphophatase from Francisella tularensis complexed with native metal cofactor Mn++ and substrate Fructose-1,6-Bisphosphate
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, Fructose-1,6-bisphosphatase, GLYCEROL, ...
Authors:Abad-Zapatero, C, Selezneva, A.I.
Deposit date:2023-02-14
Release date:2023-06-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:New structures of Class II Fructose-1,6-Bisphosphatase from Francisella tularensis provide a framework for a novel catalytic mechanism for the entire class.
Plos One, 18, 2023
8G5W
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BU of 8g5w by Molmil
Structure of the Class II Fructose-1,6-Bisphophatase from Francisella tularensis complexed with native metal cofactor Mn++
Descriptor: Fructose-1,6-bisphosphatase, GLYCEROL, MANGANESE (II) ION
Authors:Abad-Zapatero, C, Selezneva, A.I.
Deposit date:2023-02-14
Release date:2023-06-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:New structures of Class II Fructose-1,6-Bisphosphatase from Francisella tularensis provide a framework for a novel catalytic mechanism for the entire class.
Plos One, 18, 2023
7MC9
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BU of 7mc9 by Molmil
X-RAY STRUCTURE OF PEDV PAPAIN-LIKE PROTEASE 2 bound to UB-PA
Descriptor: 3C-like proteinase, Ubiquitin, ZINC ION, ...
Authors:Durie, I.A, Dzimianski, J.V, Daczkowski, C.M, Pegan, S.D.
Deposit date:2021-04-01
Release date:2021-07-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.099 Å)
Cite:Structural insights into the interaction of papain-like protease 2 from the alphacoronavirus porcine epidemic diarrhea virus and ubiquitin
Acta Cryst. D, 77, 2021
5BVW
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BU of 5bvw by Molmil
Fragment-based discovery of potent and selective DDR1/2 inhibitors
Descriptor: Epithelial discoidin domain-containing receptor 1, IODIDE ION, N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE-5-CARBOXAMIDE
Authors:Murray, C, Berdini, V, Buck, I, Carr, M, Cleasby, A, Coyle, J, Curry, J, Day, J, Hearn, K, Iqbal, A, Lee, L, Martins, V, Mortenson, P, Munck, J, Page, L, Patel, S, Roomans, S, Kirsten, T, Saxty, G.
Deposit date:2015-06-05
Release date:2015-08-05
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Fragment-Based Discovery of Potent and Selective DDR1/2 Inhibitors.
Acs Med.Chem.Lett., 6, 2015
4RCO
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BU of 4rco by Molmil
1.9 Angstrom Crystal Structure of Superantigen-like Protein, Exotoxin from Staphylococcus aureus, in Complex with Sialyl-LewisX.
Descriptor: CHLORIDE ION, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-alpha-D-glucopyranose, Putative uncharacterized protein
Authors:Minasov, G, Nocadello, S, Shuvalova, L, Filippova, E, Halavaty, A, Dubrovska, I, Flores, K, Bagnoli, F, Falugi, F, Bottomley, M, Grandi, G, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-09-16
Release date:2014-10-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:1.9 Angstrom Crystal Structure of Superantigen-like Protein, Exotoxin from Staphylococcus aureus, in Complex with Sialyl-LewisX.
TO BE PUBLISHED
6E9A
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BU of 6e9a by Molmil
HIV-1 WILD TYPE PROTEASE WITH GRL-034-17A, (3aS, 5R, 6aR)-2-OXOHEXAHYD CYCLOPENTA[D]-5-OXAZOLYL URETHANE WITH A BICYCLIC OXAZOLIDINONE SCAFF AS THE P2 LIGAND
Descriptor: (3aS,5R,6aR)-2-oxohexahydro-2H-cyclopenta[d][1,3]oxazol-5-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate, CHLORIDE ION, FORMIC ACID, ...
Authors:Wang, Y.-F, Agniswamy, J, Weber, I.T.
Deposit date:2018-07-31
Release date:2018-11-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Design and Synthesis of Potent HIV-1 Protease Inhibitors Containing Bicyclic Oxazolidinone Scaffold as the P2 Ligands: Structure-Activity Studies and Biological and X-ray Structural Studies.
J. Med. Chem., 61, 2018
7A0H
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BU of 7a0h by Molmil
Structure of homodimeric actin capping protein alpha subunit from Plasmodium berghei
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BROMIDE ION, F-actin-capping protein subunit alpha, ...
Authors:Bendes, A.A, Kursula, P, Kursula, I.
Deposit date:2020-08-09
Release date:2021-08-18
Last modified:2022-02-23
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structure and function of an atypical homodimeric actin capping protein from the malaria parasite.
Cell.Mol.Life Sci., 79, 2022
8GR2
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BU of 8gr2 by Molmil
Crystal structure of the GDSL-family esterase CJ0610C from Campylobacter jejuni
Descriptor: DUF459 domain-containing protein, SULFATE ION
Authors:Ki, D.U, Song, W.S, Yoon, S.I.
Deposit date:2022-08-31
Release date:2022-11-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and biochemical analysis of the GDSL-family esterase CJ0610C from Campylobacter jejuni.
Biochem.Biophys.Res.Commun., 631, 2022
5JUL
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BU of 5jul by Molmil
Near atomic structure of the Dark apoptosome
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Apaf-1 related killer DARK
Authors:Cheng, T.C, Akey, I.V, Yuan, S, Yu, Z, Ludtke, S.J, Akey, C.W.
Deposit date:2016-05-10
Release date:2017-02-22
Last modified:2019-12-25
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:A Near-Atomic Structure of the Dark Apoptosome Provides Insight into Assembly and Activation.
Structure, 25, 2017
5BVK
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BU of 5bvk by Molmil
Fragment-based discovery of potent and selective DDR1/2 inhibitors
Descriptor: 1-(2-chlorophenyl)-3-(pyridin-3-ylmethyl)urea, Epithelial discoidin domain-containing receptor 1, IODIDE ION
Authors:Murray, C, Berdini, V, Buck, I, Carr, M, Cleasby, A, Coyle, J, Curry, J, Day, J, Hearn, K, Iqbal, A, Lee, L, Martins, V, Mortenson, P, Munck, J, Page, L, Patel, S, Roomans, S, Kirsten, T, Saxty, G.
Deposit date:2015-06-05
Release date:2015-08-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Fragment-Based Discovery of Potent and Selective DDR1/2 Inhibitors.
Acs Med.Chem.Lett., 6, 2015
5BVO
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BU of 5bvo by Molmil
Fragment-based discovery of potent and selective DDR1/2 inhibitors
Descriptor: Epithelial discoidin domain-containing receptor 1, IODIDE ION, N-(5-{(1S)-1-[(5-fluoro-1,3-benzoxazol-2-yl)amino]ethyl}-2-methylphenyl)imidazo[1,2-a]pyridine-3-carboxamide
Authors:Murray, C, Berdini, V, Buck, I, Carr, M, Cleasby, A, Coyle, J, Curry, J, Day, J, Hearn, K, Iqbal, A, Lee, L, Martins, V, Mortenson, P, Munck, J, Page, L, Patel, S, Roomans, S, Kirsten, T, Saxty, G.
Deposit date:2015-06-05
Release date:2015-08-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Fragment-Based Discovery of Potent and Selective DDR1/2 Inhibitors.
Acs Med.Chem.Lett., 6, 2015
5K8A
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BU of 5k8a by Molmil
NIST FAB
Descriptor: Heavy chain, humanized Fab Lite chain
Authors:Gallagher, D.T, Galvin, C.V, Karageorgos, I, Marino, J.P.
Deposit date:2016-05-27
Release date:2017-08-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Data on crystal organization in the structure of the Fab fragment from the NIST reference antibody, RM 8671.
Data Brief, 16, 2018
5C9J
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BU of 5c9j by Molmil
Human CD1c with ligands in A' and F' channel
Descriptor: Beta-2-microglobulin, GLYCEROL, LAURIC ACID, ...
Authors:Tews, I, Machelett, M.M, Mansour, S, Gadola, S.D.
Deposit date:2015-06-27
Release date:2016-03-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Cholesteryl esters stabilize human CD1c conformations for recognition by self-reactive T cells.
Proc.Natl.Acad.Sci.USA, 113, 2016
8APN
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BU of 8apn by Molmil
Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Hypothetical protein, MAGNESIUM ION, ...
Authors:Tobiasson, V, Berzina, I, Amunts, A.
Deposit date:2022-08-10
Release date:2022-11-16
Last modified:2023-01-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.
Nat Commun, 13, 2022
8GQ0
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BU of 8gq0 by Molmil
Crystal structure of BRD4 bromodomain 1 (BD1) in complex with STL233497
Descriptor: Bromodomain-containing protein 4, FORMIC ACID, GLYCEROL, ...
Authors:Park, T.H, Lee, B.I.
Deposit date:2022-08-27
Release date:2023-01-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Crystal structure of [1,2,4]triazolo[4,3-b]pyridazine derivatives as BRD4 bromodomain inhibitors and structure-activity relationship study.
Sci Rep, 13, 2023
1N4K
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BU of 1n4k by Molmil
Crystal structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with IP3
Descriptor: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Inositol 1,4,5-trisphosphate receptor type 1
Authors:Bosanac, I, Alattia, J.R, Mal, T.K, Chan, J, Talarico, S, Tong, F.K, Tong, K.I, Yoshikawa, F, Furuichi, T, Iwai, M, Michikawa, T, Mikoshiba, K, Ikura, M.
Deposit date:2002-10-31
Release date:2002-12-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with its ligand.
Nature, 420, 2002
7AC6
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BU of 7ac6 by Molmil
Structure of sponge-phase grown PepTst2 collected by rotation serial crystallography on a COC membrane at a synchrotron source
Descriptor: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, 2-(2-METHOXYETHOXY)ETHANOL, Di-or tripeptide:H+ symporter, ...
Authors:Martiel, I, Padeste, C, Karpik, A, Huang, C.Y, Wang, M, Marsh, M.
Deposit date:2020-09-10
Release date:2021-09-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Versatile microporous polymer-based supports for serial macromolecular crystallography.
Acta Crystallogr D Struct Biol, 77, 2021
7AC5
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BU of 7ac5 by Molmil
Structure of Tubulin Darpin complex 1 collected by rotation serial crystallography on a COC membrane at a synchrotron source
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, Designed Ankyrin Repeat Protein (DARPIN) D1, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Martiel, I, Olieric, N, Wranik, M, Padeste, C, Karpik, A, Huang, C.Y, Wang, M, Marsh, M.
Deposit date:2020-09-10
Release date:2021-09-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Versatile microporous polymer-based supports for serial macromolecular crystallography.
Acta Crystallogr D Struct Biol, 77, 2021

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