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PDB: 358 results

8GTA
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BU of 8gta by Molmil
Cryo-EM structure of the marine siphophage vB_Dshs-R4C capsid
Descriptor: Major capsid protein
Authors:Sun, H, Huang, Y, Zheng, Q, Li, S, Zhang, R, Xia, N.
Deposit date:2022-09-07
Release date:2023-07-12
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Structure and proposed DNA delivery mechanism of a marine roseophage.
Nat Commun, 14, 2023
4ZS3
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BU of 4zs3 by Molmil
Structural complex of 5-aminofluorescein bound to the FTO protein
Descriptor: 2-OXOGLUTARIC ACID, 5-amino-2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)benzoic acid, Alpha-ketoglutarate-dependent dioxygenase FTO, ...
Authors:Wang, T, Hong, T, Huang, Y, Yang, C.G, Zhou, X.
Deposit date:2015-05-13
Release date:2015-11-04
Last modified:2015-11-18
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Fluorescein Derivatives as Bifunctional Molecules for the Simultaneous Inhibiting and Labeling of FTO Protein
J.Am.Chem.Soc., 137, 2015
4ZS2
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BU of 4zs2 by Molmil
Structural complex of FTO/fluorescein
Descriptor: 2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID, 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase FTO, ...
Authors:Wang, T, Hong, T, Huang, Y, Yang, C.G, Zhou, X.
Deposit date:2015-05-13
Release date:2015-11-04
Last modified:2015-11-18
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Fluorescein Derivatives as Bifunctional Molecules for the Simultaneous Inhibiting and Labeling of FTO Protein
J.Am.Chem.Soc., 137, 2015
4Y25
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BU of 4y25 by Molmil
Bacterial polysaccharide outer membrane secretin
Descriptor: Poly-beta-1,6-N-acetyl-D-glucosamine export protein
Authors:Wang, Y, AndolePannuri, A, Ni, D, Zhou, H, Cao, X, Lu, X, Romeo, T, Huang, Y.
Deposit date:2015-02-09
Release date:2016-03-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.821 Å)
Cite:Structural Basis for Translocation of a Biofilm-supporting Exopolysaccharide across the Bacterial Outer Membrane
J.Biol.Chem., 291, 2016
4MZ4
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BU of 4mz4 by Molmil
Discovery of an Irreversible HCV NS5B Polymerase Inhibitor
Descriptor: 1-[(2-chloroquinolin-3-yl)methyl]-6-fluoro-5-methyl-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxylic acid, PHOSPHATE ION, RNA-directed RNA polymerase
Authors:Zeng, Q, Anilkumar, G.N, Rosenblum, S.B, Huang, H.-C, Lesburg, C.A, Jiang, Y, Selyutin, O, Chan, T.-Y, Bennett, F, Chen, K.X, Venkatraman, S, Sannigrahi, M, Velazquez, F, Duca, J.S, Gavalas, S, Huang, Y, Pu, H, Wang, L, Pinto, P, Vibulbhan, B, Agrawal, S, Ferrari, E, Jiang, C.-K, Li, C, Hesk, D, Gesell, J, Sorota, S, Shih, N.-Y, Njoroge, F.G, Kozlowski, J.A.
Deposit date:2013-09-29
Release date:2013-12-11
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Discovery of an irreversible HCV NS5B polymerase inhibitor.
Bioorg.Med.Chem.Lett., 23, 2013
1MV4
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BU of 1mv4 by Molmil
TM9A251-284: A Peptide Model of the C-Terminus of a Rat Striated Alpha Tropomyosin
Descriptor: Tropomyosin 1 alpha chain
Authors:Greenfield, N.J, Swapna, G.V.T, Huang, Y, Palm, T, Graboski, S, Montelione, G.T, Hitchcock-Degregori, S.E.
Deposit date:2002-09-24
Release date:2003-02-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:The Structure of the Carboxyl Terminus of Striated alpha-Tropomyosin in Solution Reveals an Unusual Parallel Arrangement of Interacting alpha-Helices
Biochemistry, 42, 2003
7YVA
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BU of 7yva by Molmil
Crystal structure of Candida albicans Fructose-1,6-bisphosphate aldolase complexed with lipoic acid
Descriptor: 1,2-ETHANEDIOL, Candida albicans Fructose-1,6-bisphosphate aldolase, LIPOIC ACID, ...
Authors:Cao, H, Huang, Y, Ren, Y, Wan, J.
Deposit date:2022-08-19
Release date:2023-08-30
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Crystal structure of Candida albicans Fructose-1,6-bisphosphate aldolase complexed with lipoic acid
To Be Published
4E13
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BU of 4e13 by Molmil
Substrate-directed dual catalysis of dicarbonyl compounds by diketoreductase
Descriptor: Diketoreductase, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Lu, M, White, M.A, Huang, Y, Wu, X, Liu, N, Cheng, X, Chen, Y.
Deposit date:2012-03-05
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Dual catalysis mode for the dicarbonyl reduction catalyzed by diketoreductase
Chem.Commun.(Camb.), 48, 2012
4DYD
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BU of 4dyd by Molmil
Substrate-directed dual catalysis of dicarbonyl compounds by diketoreductase
Descriptor: Diketoreductase, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Lu, M, White, M.A, Huang, Y, Wu, X, Liu, N, Cheng, X, Chen, Y.
Deposit date:2012-02-28
Release date:2012-11-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Dual catalysis mode for the dicarbonyl reduction catalyzed by diketoreductase
Chem.Commun.(Camb.), 48, 2012
4E12
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BU of 4e12 by Molmil
Substrate-directed dual catalysis of dicarbonyl compounds by diketoreductase
Descriptor: Diketoreductase, GLYCEROL, PENTAETHYLENE GLYCOL, ...
Authors:Lu, M, White, M.A, Huang, Y, Wu, X, Liu, N, Cheng, X, Chen, Y.
Deposit date:2012-03-05
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Dual catalysis mode for the dicarbonyl reduction catalyzed by diketoreductase
Chem.Commun.(Camb.), 48, 2012
6M71
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BU of 6m71 by Molmil
SARS-Cov-2 RNA-dependent RNA polymerase in complex with cofactors
Descriptor: Non-structural protein 7, Non-structural protein 8, RNA-directed RNA polymerase
Authors:Gao, Y, Yan, L, Huang, Y, Liu, F, Cao, L, Wang, T, Wang, Q, Lou, Z, Rao, Z.
Deposit date:2020-03-16
Release date:2020-04-01
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of the RNA-dependent RNA polymerase from COVID-19 virus.
Science, 368, 2020
4PLL
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BU of 4pll by Molmil
Structure of the chromodaomain of MRG2 in complex with H3K36me3
Descriptor: At1g02740, H3K36me3
Authors:Liu, Y, Huang, Y.
Deposit date:2014-05-18
Release date:2015-07-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression.
Plos Genet., 10, 2014
4PLI
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BU of 4pli by Molmil
Structure of the chromodomain of MRG2 in complex with H3K36me3
Descriptor: At1g02740, H3K36me3
Authors:Liu, Y, Huang, Y.
Deposit date:2014-05-18
Release date:2015-07-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression.
Plos Genet., 10, 2014
1K0U
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BU of 1k0u by Molmil
Inhibition of S-adenosylhomocysteine Hydrolase by "acyclic sugar" Adenosine Analogue D-eritadenine
Descriptor: D-ERITADENINE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE
Authors:Takusagawa, F, Huang, Y, Komoto, J, Takata, Y, Gomi, T, Ogawa, H, Fujioka, M, Powell, D.
Deposit date:2001-09-20
Release date:2001-10-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Inhibition of S-adenosylhomocysteine hydrolase by acyclic sugar adenosine analogue D-eritadenine. Crystal structure of S-adenosylhomocysteine hydrolase complexed with D-eritadenine.
J.Biol.Chem., 277, 2002
3U4R
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BU of 3u4r by Molmil
Novel HCV NS5B polymerase Inhibitors: Discovery of Indole C2 Acyl sulfonamides
Descriptor: 1-[(2-aminopyridin-4-yl)methyl]-5-chloro-N-({3-[(methylsulfonyl)amino]phenyl}sulfonyl)-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxamide, RNA-directed RNA polymerase
Authors:Anilkumar, G.N, Selyutin, O, Rosenblum, S.B, Zeng, Q, Jiang, Y, Chan, T.-Y, Pu, H, Wang, L, Bennett, F, Chen, K.X, Lesburg, C.A, Duca, J.S, Gavalas, S, Huang, Y, Pinto, P, Sannagrahi, M, Velazquez, F, Venkataraman, S, Vilbubhan, B, Agrawal, S, Ferrari, E, Jiang, C.-K, Huang, H.-C, Shih, N.-Y, Njoroge, F.G, Kozlowski, J.A.
Deposit date:2011-10-10
Release date:2011-12-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:II. Novel HCV NS5B polymerase inhibitors: Discovery of indole C2 acyl sulfonamides.
Bioorg.Med.Chem.Lett., 22, 2012
3U4O
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BU of 3u4o by Molmil
Novel HCV NS5B polymerase Inhibitors: Discovery of Indole C2 Acyl sulfonamides
Descriptor: 1-[(2-aminopyridin-4-yl)methyl]-5-chloro-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxylic acid, PHOSPHATE ION, RNA-directed RNA polymerase
Authors:Anilkumar, G.N, Selyutin, O, Rosenblum, S.B, Zeng, Q, Jiang, Y, Chan, T.-Y, Pu, H, Wang, L, Bennett, F, Chen, K.X, Lesburg, C.A, Duca, J.S, Gavalas, S, Huang, Y, Pinto, P, Sannigrahi, M, Velazquez, F, Venkataraman, S, Vilbubhan, B, Agrawal, S, Ferrari, E, Jiang, C.-K, Huang, H.-C, Shih, N.-Y, Njoroge, F.G, Kozlowski, J.A.
Deposit date:2011-10-10
Release date:2011-12-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:II. Novel HCV NS5B polymerase inhibitors: Discovery of indole C2 acyl sulfonamides.
Bioorg.Med.Chem.Lett., 22, 2012
6LP2
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BU of 6lp2 by Molmil
Structure of Lpg2148/UBE2N-Ub complex
Descriptor: Ubiquitin, Ubiquitin-conjugating enzyme E2 N, Uncharacterized protein lpg2148
Authors:Feng, Y, Wang, Y, Huang, Y, Li, D.
Deposit date:2020-01-08
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.479 Å)
Cite:Structure of Lpg2148/UBE2N-Ub complex
To Be Published
2YOJ
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BU of 2yoj by Molmil
HCV NS5B polymerase complexed with pyridonylindole compound
Descriptor: 4-fluoranyl-6-[(7-fluoranyl-4-oxidanylidene-3H-quinazolin-6-yl)methyl]-8-(2-oxidanylidene-1H-pyridin-3-yl)furo[2,3-e]indole-7-carboxylic acid, PHOSPHATE ION, RNA-DIRECTED RNA POLYMERASE
Authors:Chen, K.X, Venkatraman, S, Anilkumar, G.N, Zeng, Q, Lesburg, C.A, Vibulbhan, B, Yang, W, Velazquez, F, Chan, T.-Y, Bennett, F, Sannigrahi, M, Jiang, Y, Duca, J.S, Pinto, P, Gavalas, S, Huang, Y, Wu, W, Selyutin, O, Agrawal, S, Feld, B, Huang, H.-C, Li, C, Cheng, K.-C, Shih, N.-Y, Kozlowski, J.A, Rosenblum, S.B, Njoroge, F.G.
Deposit date:2012-10-24
Release date:2013-10-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Discovery of Sch 900188: A Potent Hepatitis C Virus Ns5B Polymerase Inhibitor Prodrug as a Development Candidate
Acs Med.Chem.Lett., 5, 2014
6LW4
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BU of 6lw4 by Molmil
Structure of Lpg2148/Lpg2149 complex
Descriptor: Uncharacterized protein Lpg2148, Uncharacterized protein Lpg2149
Authors:Feng, Y, Wang, Y, Huang, Y, Li, D.
Deposit date:2020-02-07
Release date:2021-02-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Lpg2148/Lpg2149 complex
To Be Published
4PL6
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BU of 4pl6 by Molmil
Structure of the chromodomain of MRG2 in complex with H3K4me3
Descriptor: At1g02740, H3K4me3
Authors:Liu, Y.C, Huang, Y.
Deposit date:2014-05-16
Release date:2015-07-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.681 Å)
Cite:Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression.
Plos Genet., 10, 2014
8WI0
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BU of 8wi0 by Molmil
wt-hMRP5 inward-open
Descriptor: ATP-binding cassette sub-family C member 5
Authors:Liu, Z.M, Huang, Y.
Deposit date:2023-09-24
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Inhibition and transport mechanisms of the ABC transporter hMRP5.
Nat Commun, 15, 2024
2M20
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BU of 2m20 by Molmil
EGFR transmembrane - juxtamembrane (TM-JM) segment in bicelles: MD guided NMR refined structure.
Descriptor: Epidermal growth factor receptor
Authors:Endres, N.F, Das, R, Smith, A, Arkhipov, A, Kovacs, E, Huang, Y, Pelton, J.G, Shan, Y, Shaw, D.E, Wemmer, D.E, Groves, J.T, Kuriyan, J.
Deposit date:2012-12-11
Release date:2013-02-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Conformational Coupling across the Plasma Membrane in Activation of the EGF Receptor.
Cell(Cambridge,Mass.), 152, 2013
6AKW
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BU of 6akw by Molmil
Crystal structure of RNA dioxygenase bound with an inhibitor
Descriptor: 2-OXOGLUTARIC ACID, 2-[[2,6-bis(chloranyl)-4-(3,5-dimethyl-1,2-oxazol-4-yl)phenyl]amino]benzoic acid, Alpha-ketoglutarate-dependent dioxygenase FTO
Authors:Yang, C.-G, Huang, Y, Gan, J.
Deposit date:2018-09-04
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Small-Molecule Targeting of Oncogenic FTO Demethylase in Acute Myeloid Leukemia.
Cancer Cell, 35, 2019
1XGR
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BU of 1xgr by Molmil
Structure for antibody HyHEL-63 Y33I mutant complexed with hen egg lysozyme
Descriptor: Lysozyme C, antibody kappa heavy chain, antibody kappa light chain
Authors:Li, Y, Huang, Y, Swaminathan, C.P, Smith-Gill, S.J, Mariuzza, R.A.
Deposit date:2004-09-17
Release date:2005-09-06
Last modified:2013-10-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces
Structure, 13, 2005
1XGU
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BU of 1xgu by Molmil
Structure for antibody HyHEL-63 Y33F mutant complexed with hen egg lysozyme
Descriptor: Lysozyme C, antibody kappa heavy chain, antibody kappa light chain
Authors:Li, Y, Huang, Y, Swaminathan, C.P, Smith-Gill, S.J, Mariuzza, R.A.
Deposit date:2004-09-17
Release date:2005-09-06
Last modified:2013-10-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces
Structure, 13, 2005

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