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PDB: 553 results

7Y3Z
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BU of 7y3z by Molmil
Structure of a novel carboxylesterase FEH from Acinetobacter sp. DL-2
Descriptor: Fenoxaprop-p-ethyl hydrolase
Authors:Huang, Y, Liu, W.D, Zhang, Y.J, Duan, Y.J, Lu, M.L.
Deposit date:2022-06-13
Release date:2023-07-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a novel carboxylesterase FEH from Acinetobacter sp. DL-2
To Be Published
8YB7
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BU of 8yb7 by Molmil
SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C3 symmetry)
Descriptor: Non-structural protein 4, Papain-like protease nsp3
Authors:Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T.
Deposit date:2024-02-12
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Molecular Architecture of Coronavirus Double Membrane Vesicle Pore Complex
To Be Published
8YAX
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BU of 8yax by Molmil
SARS-CoV-2 DMV nsp3-4 pore complex (full-pore)
Descriptor: Non-structural protein 4, Papain-like protease nsp3
Authors:Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T.
Deposit date:2024-02-10
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Molecular Architecture of Coronavirus Double Membrane Vesicle Pore Complex
To Be Published
8YB5
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BU of 8yb5 by Molmil
SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C6 symmetry)
Descriptor: Non-structural protein 4, Papain-like protease nsp3
Authors:Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T.
Deposit date:2024-02-11
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Molecular Architecture of Coronavirus Double Membrane Vesicle Pore Complex
To Be Published
3FIP
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BU of 3fip by Molmil
Crystal structure of Usher PapC translocation pore
Descriptor: Outer membrane usher protein papC
Authors:Huang, Y, Deisenhofer, J.
Deposit date:2008-12-12
Release date:2009-09-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.154 Å)
Cite:Insights into pilus assembly and secretion from the structure and functional characterization of usher PapC.
Proc.Natl.Acad.Sci.USA, 106, 2009
7YL2
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BU of 7yl2 by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor Y07004
Descriptor: Bromodomain-containing protein 4, GLYCEROL, N-(1-ethyl-2-oxidanylidene-3H-indol-5-yl)cyclohexanesulfonamide, ...
Authors:Huang, Y, Wei, A, Dong, R, Xu, H, Zhang, C, Chen, Z, Li, J, Wu, X, Zhang, Y, Xu, Y.
Deposit date:2022-07-25
Release date:2023-07-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor Y07004
To Be Published
2MT8
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BU of 2mt8 by Molmil
Solution structure MTAbl13, a grafted MCoTI-II
Descriptor: MTAbl13 of grafted MCoTI-II
Authors:Huang, Y, Wang, C, Craik, D.
Deposit date:2014-08-15
Release date:2015-10-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Design of substrate-based BCR-ABL kinase inhibitors using the cyclotide scaffold.
Sci Rep, 5, 2015
4JC2
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BU of 4jc2 by Molmil
Isolation, Cloning and Biophysical Analysis of a Novel Hexameric Green Fluorescent Protein from a Philippine Soft Coral
Descriptor: asFP504
Authors:Huang, Y.C, Emralino, F.L, Liu, F.C, Saloma, C.P, Bascos, N.A, Chen, C.J.
Deposit date:2013-02-21
Release date:2014-03-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Isolation, Cloning and Biophysical Analysis of a Novel Hexameric Green Fluorescent Protein from a Philippine Soft Coral
To be Published
1PW4
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BU of 1pw4 by Molmil
Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Descriptor: Glycerol-3-phosphate transporter
Authors:Huang, Y, Lemieux, M.J, Song, J, Auer, M, Wang, D.N.
Deposit date:2003-06-30
Release date:2003-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and Mechanism of the Glycerol-3-Phosphate Transporter from Escherichia Coli
Science, 301, 2003
2FMM
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BU of 2fmm by Molmil
Crystal Structure of EMSY-HP1 complex
Descriptor: Chromobox protein homolog 1, Protein EMSY, SULFATE ION
Authors:Huang, Y.
Deposit date:2006-01-09
Release date:2006-05-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the HP1-EMSY complex reveals an unusual mode of HP1 binding.
Structure, 14, 2006
7Y0B
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BU of 7y0b by Molmil
Crystal structure of human short-chain acyl-CoA dehydrogenase
Descriptor: (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[[4-[(3S)-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol, FLAVIN-ADENINE DINUCLEOTIDE, Short-chain specific acyl-CoA dehydrogenase, ...
Authors:Huang, Y, Xu, Y, Li, J.
Deposit date:2022-06-04
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.076 Å)
Cite:Crystal structure of human short-chain acyl-coA dehydrogenase
To Be Published
7Y0A
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BU of 7y0a by Molmil
Crystal structure of human short-chain acyl-CoA dehydrogenase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, Short-chain specific acyl-CoA dehydrogenase, ...
Authors:Huang, Y, Xu, Y, Li, J.
Deposit date:2022-06-04
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.317 Å)
Cite:Crystal structure of human short-chain acyl-CoA dehydrogenase
To Be Published
6IB7
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BU of 6ib7 by Molmil
Structure of wild type SuhB
Descriptor: GLYCEROL, Inositol-1-monophosphatase, MAGNESIUM ION
Authors:Huang, Y.H, Loll, B, Wahl, M.C.
Deposit date:2018-11-29
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.245 Å)
Cite:Structural basis for the function of SuhB as a transcription factor in ribosomal RNA synthesis.
Nucleic Acids Res., 47, 2019
5WQA
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BU of 5wqa by Molmil
Crystal structure of PDE4D catalytic domain complexed with Selaginpulvilins K
Descriptor: 1-[2-(4-hydroxyphenyl)ethynyl]-9,9-bis(4-methoxyphenyl)-7-oxidanyl-fluorene-2-carbaldehyde, MAGNESIUM ION, ZINC ION, ...
Authors:Huang, Y, Zhang, T, Zheng, X, Yin, S, Luo, H.B.
Deposit date:2016-11-24
Release date:2017-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The discovery, complex crystal structure, and recognition mechanism of a novel natural PDE4 inhibitor from Selaginella pulvinata
Biochem. Pharmacol., 130, 2017
6A6L
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BU of 6a6l by Molmil
Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA
Descriptor: Nuclease-sensitive element-binding protein 1, RNA (5'-R(P*CP*AP*UP*(5MC))-3')
Authors:Huang, Y.
Deposit date:2018-06-28
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA
To Be Published
6IB8
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BU of 6ib8 by Molmil
Structure of a complex of SuhB and NusA AR2 domain
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, GLYCEROL, Inositol-1-monophosphatase, ...
Authors:Huang, Y.H, Loll, B, Wahl, M.C.
Deposit date:2018-11-29
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.646 Å)
Cite:Structural basis for the function of SuhB as a transcription factor in ribosomal RNA synthesis.
Nucleic Acids Res., 47, 2019
7VRF
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BU of 7vrf by Molmil
Crystal structure of Oxpecker chromodomain in complex with H3K9me3
Descriptor: H3K9me3, Oxpecker
Authors:Huang, Y, Jin, Z, Yu, B.
Deposit date:2021-10-22
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into the chromodomain of Oxpecker in complex with histone H3 lysine 9 trimethylation reveal a transposon silencing mechanism by heterodimerization.
Biochem.Biophys.Res.Commun., 652, 2023
2IJG
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BU of 2ijg by Molmil
Crystal Structure of cryptochrome 3 from Arabidopsis thaliana
Descriptor: 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID, Cryptochrome DASH, chloroplast/mitochondrial, ...
Authors:Huang, Y, Deisenhofer, J.
Deposit date:2006-09-29
Release date:2006-11-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity
Proc.Natl.Acad.Sci.Usa, 103, 2006
6AHW
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BU of 6ahw by Molmil
Crystal structure of circular-permutated YibK methyltransferase from Haemophilus influenzae
Descriptor: circular-permutated tRNA (cytidine(34)-2'-O)-methyltransferase
Authors:Chuang, Y.C, Lyu, P.C, Hsu, S.T.D.
Deposit date:2018-08-20
Release date:2019-01-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Untying a Protein Knot by Circular Permutation.
J. Mol. Biol., 431, 2019
3WBA
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BU of 3wba by Molmil
Rice Os3BGlu6 E178Q with Covalent Glucosyl Moiety from p-nitrophenyl glucopyranoside.
Descriptor: Beta-glucosidase 6, GLYCEROL, alpha-D-glucopyranose
Authors:Sansenya, S, Hua, Y, Cairns, J.R.K.
Deposit date:2013-05-14
Release date:2013-09-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Enzymatic and structural characterization of hydrolysis of gibberellin A4 glucosyl ester by a rice beta-d-glucosidase
Arch.Biochem.Biophys., 537, 2013
3WBE
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BU of 3wbe by Molmil
Rice Os3BGlu6 Beta-Glucosidase E178Q mutant in a covalent complex with Glc from GA4GE.
Descriptor: Beta-glucosidase 6, GLYCEROL, alpha-D-glucopyranose
Authors:Sansenya, S, Hua, Y, Cairns, J.R.K.
Deposit date:2013-05-14
Release date:2013-09-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Enzymatic and structural characterization of hydrolysis of gibberellin A4 glucosyl ester by a rice beta-d-glucosidase
Arch.Biochem.Biophys., 537, 2013
7F6D
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BU of 7f6d by Molmil
Reconstruction of the HerA-NurA complex from Deinococcus radiodurans
Descriptor: HerA, NurA
Authors:Xu, Y, Xu, L, Guo, J, Hua, Y, Zhao, Y.
Deposit date:2021-06-25
Release date:2022-06-29
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.85 Å)
Cite:Mechanisms of helicase activated DNA end resection in bacteria.
Structure, 30, 2022
6LRD
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BU of 6lrd by Molmil
Structure of RecJ complexed with a 5'-P-dSpacer-modified ssDNA
Descriptor: ASP-LEU-PRO-PHE, DNA (5'-D(P*(3DR)P*TP*TP*TP*TP*T)-3'), MANGANESE (II) ION, ...
Authors:Cheng, K, Hua, Y.
Deposit date:2020-01-16
Release date:2020-08-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.901335 Å)
Cite:Participation of RecJ in the base excision repair pathway of Deinococcus radiodurans.
Nucleic Acids Res., 48, 2020
6MO1
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BU of 6mo1 by Molmil
Structure of dengue virus protease with an allosteric Inhibitor that blocks replication
Descriptor: 5-[4-(aminomethyl)phenyl]-6-[4-(furan-3-yl)phenyl]-N-[(piperidin-4-yl)methyl]pyrazin-2-amine, FLAVIVIRUS_NS2B/Peptidase S7
Authors:Lin, Y.-L, Hua, Y, Nie, S, Wu, J, Wu, F, Huo, T, Yao, Y, Song, Y.
Deposit date:2018-10-03
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Discovery, X-ray Crystallography and Antiviral Activity of Allosteric Inhibitors of Flavivirus NS2B-NS3 Protease.
J.Am.Chem.Soc., 141, 2019
6MO0
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BU of 6mo0 by Molmil
Structure of dengue virus protease with an allosteric Inhibitor that blocks replication
Descriptor: 1-(4-{3-[4-(furan-3-yl)phenyl]-5-[(piperidin-4-yl)methoxy]pyrazin-2-yl}phenyl)methanamine, FLAVIVIRUS_NS2B/Peptidase S7
Authors:Lin, Y.-L, Nie, S, Hua, Y, Wu, J, Wu, F, Huo, T, Yao, Y, Song, Y.
Deposit date:2018-10-03
Release date:2019-05-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Discovery, X-ray Crystallography and Antiviral Activity of Allosteric Inhibitors of Flavivirus NS2B-NS3 Protease.
J. Am. Chem. Soc., 141, 2019

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