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PDB: 105 results

4QX5
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Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: Insights for PKG agonist design
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, IODIDE ION, cGMP-dependent protein kinase 1
Authors:Huang, G.Y, Gerlits, O.O, Blakeley, M.P, Sankaran, B, Kovalevsky, A.Y, Kim, C.
Deposit date:2014-07-18
Release date:2014-11-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.318 Å)
Cite:Neutron Diffraction Reveals Hydrogen Bonds Critical for cGMP-Selective Activation: Insights for cGMP-Dependent Protein Kinase Agonist Design.
Biochemistry, 53, 2014
6HAV
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BU of 6hav by Molmil
Crystal structure of [Fe]-hydrogenase (Hmd) from Methanococcus aeolicus in complex with FeGP and methenyl-tetrahydromethanopterin (close form A) at 1.06 A resolution
Descriptor: 1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydro-8H-imidazo[1,5-f]pteridin-10-ium-8-yl]phenyl}-1-deoxy-5-O-{5-O-[(S)-{[(1S)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitol, 5,10-methenyltetrahydromethanopterin hydrogenase, GLYCEROL, ...
Authors:Huang, G, Wagner, T, Wodrich, M.D, Ataka, K, Bill, E, Ermler, U, Hu, X, Shima, S.
Deposit date:2018-08-08
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:The atomic-resolution crystal structure of activated [Fe]-hydrogenase
Nat Catal, 2019
6HAC
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Crystal structure of [Fe]-hydrogenase (Hmd) holoenzyme from Methanococcus aeolicus (open form)
Descriptor: 5,10-methenyltetrahydromethanopterin hydrogenase, GLYCEROL, PENTAETHYLENE GLYCOL, ...
Authors:Huang, G, Wagner, T, Wodrich, M.D, Ataka, K, Bill, E, Ermler, U, Hu, X, Shima, S.
Deposit date:2018-08-07
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The atomic-resolution crystal structure of activated [Fe]-hydrogenase
Nat Catal, 2019
6HAE
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BU of 6hae by Molmil
Crystal structure of [Fe]-hydrogenase (Hmd) from Methanococcus aeolicus in complex with FeGP cofactor and methenyl-tetrahydromethanopterin (close form B)
Descriptor: 1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydro-8H-imidazo[1,5-f]pteridin-10-ium-8-yl]phenyl}-1-deoxy-5-O-{5-O-[(S)-{[(1S)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitol, 5,10-methenyltetrahydromethanopterin hydrogenase, CHLORIDE ION, ...
Authors:Huang, G, Wagner, T, Wodrich, M.D, Ataka, K, Bill, E, Ermler, U, Hu, X, Shima, S.
Deposit date:2018-08-07
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The atomic-resolution crystal structure of activated [Fe]-hydrogenase
Nat Catal, 2019
4KU8
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BU of 4ku8 by Molmil
Structures of PKGI Reveal a cGMP-Selective Activation Mechanism
Descriptor: GLYCINE, cGMP-dependent Protein Kinase 1
Authors:Huang, G.Y, Kim, J.J, Reger, A.S, Lorenz, R, Moon, E.W, Casteel, D.E, Sankaran, B, Herberg, F.W, Kim, C.
Deposit date:2013-05-21
Release date:2014-01-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.994 Å)
Cite:Structural Basis for Cyclic-Nucleotide Selectivity and cGMP-Selective Activation of PKG I.
Structure, 22, 2014
4KU7
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BU of 4ku7 by Molmil
Structures of PKGI Reveal a cGMP-Selective Activation Mechanism
Descriptor: CYCLIC GUANOSINE MONOPHOSPHATE, IODIDE ION, cGMP-dependent protein kinase 1
Authors:Huang, G.Y, Kim, J.J, Reger, A.S, Lorenz, R, Moon, E.W, Casteel, D.E, Sankaran, B, Herberg, F.W, Kim, C.
Deposit date:2013-05-21
Release date:2014-01-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis for Cyclic-Nucleotide Selectivity and cGMP-Selective Activation of PKG I.
Structure, 22, 2014
7VZR
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BU of 7vzr by Molmil
Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c (the smaller form)
Descriptor: BACTERIOCHLOROPHYLL A, CALCIUM ION, CHLOROPHYLL A, ...
Authors:Huang, G.Q, Dong, S.S, Qin, X.C, Sui, S.F.
Deposit date:2021-11-16
Release date:2022-12-28
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.22 Å)
Cite:Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c
Nat Commun, 13, 2022
7VZG
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Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c (the larger form)
Descriptor: BACTERIOCHLOROPHYLL A, CALCIUM ION, CHLOROPHYLL A, ...
Authors:Huang, G.Q, Dong, S.S, Qin, X.C, Sui, S.F.
Deposit date:2021-11-16
Release date:2023-02-22
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c.
Nat Commun, 13, 2022
6I28
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BU of 6i28 by Molmil
Crystal Structure of Cydia Pomonella PTP-2 phosphatase
Descriptor: CALCIUM ION, GLYCEROL, ORF98 PTP-2
Authors:Huang, G, Keown, J.P, Oliver, M.R, Metcalf, P.
Deposit date:2018-10-31
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of protein tyrosine phosphatase-2 from Cydia pomonella granulovirus.
Acta Crystallogr.,Sect.F, 75, 2019
7WB4
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BU of 7wb4 by Molmil
Cryo-EM structure of the NR subunit from X. laevis NPC
Descriptor: GATOR complex protein SEC13, MGC154553 protein, MGC83295 protein, ...
Authors:Huang, G, Zhan, X, Shi, Y.
Deposit date:2021-12-15
Release date:2022-03-02
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Cryo-EM structure of the nuclear ring from Xenopus laevis nuclear pore complex.
Cell Res., 32, 2022
8WGH
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BU of 8wgh by Molmil
Cryo-EM structure of the red-shifted Fittonia albivenis PSI-LHCI
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Huang, G.Q, Li, X.X, Sui, S.F, Qin, X.C.
Deposit date:2023-09-21
Release date:2024-07-10
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Cryo-EM structure of the red-shifted Fittonia albivenis PSI-LHCI
To Be Published
6ICA
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BU of 6ica by Molmil
The crystal structure of Legionella pneumophila LapA aminopeptidase
Descriptor: ACETATE ION, Aminopeptidase, GLYCEROL, ...
Authors:Honghua, G, Nannan, Z.
Deposit date:2018-09-05
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.195 Å)
Cite:The crystal structure of Legionella pneumophila LapA aminopeptidase
To Be Published
7XVE
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BU of 7xve by Molmil
Human Nav1.7 mutant class-I
Descriptor: (2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Huang, G, Wu, Q, Li, Z, Pan, X, Yan, N.
Deposit date:2022-05-21
Release date:2022-08-10
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Unwinding and spiral sliding of S4 and domain rotation of VSD during the electromechanical coupling in Na v 1.7.
Proc.Natl.Acad.Sci.USA, 119, 2022
7XVF
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BU of 7xvf by Molmil
Nav1.7 mutant class2
Descriptor: (2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Huang, G, Wu, Q, Li, Z, Pan, X, Yan, N.
Deposit date:2022-05-22
Release date:2022-08-10
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Unwinding and spiral sliding of S4 and domain rotation of VSD during the electromechanical coupling in Na v 1.7.
Proc.Natl.Acad.Sci.USA, 119, 2022
7WKK
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BU of 7wkk by Molmil
Cryo-EM structure of the IR subunit from X. laevis NPC
Descriptor: Aaas-prov protein, IL4I1 protein, MGC83295 protein, ...
Authors:Huang, G, Zhan, X, Shi, Y.
Deposit date:2022-01-10
Release date:2022-03-30
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-EM structure of the inner ring from the Xenopus laevis nuclear pore complex.
Cell Res., 32, 2022
5YV7
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BU of 5yv7 by Molmil
Racemic X-ray Structure of Calcicludine
Descriptor: Kunitz-type serine protease inhibitor homolog calcicludine
Authors:Shuai, G, Qian, Q, Lei, L.
Deposit date:2017-11-24
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:Racemic X-ray Structure of Calcicludine
To Be Published
2LKJ
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BU of 2lkj by Molmil
Structures and Interaction Analyses of the Integrin Alpha-M Beta-2 Cytoplasmic Tails
Descriptor: Integrin alpha-M
Authors:Chua, G.L, Tang, X.Y, Amalraj, M, Tan, S.M, Bhattacharjya, S.
Deposit date:2011-10-12
Release date:2011-11-02
Last modified:2011-11-16
Method:SOLUTION NMR
Cite:Structures and interaction analyses of the integrin alphaMbeta2 cytoplasmic tails
J.Biol.Chem., 2011
2LUV
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BU of 2luv by Molmil
Structure and Binding Interface of the Cytosolic Tails of aXb2 Integrin
Descriptor: Integrin alpha-X
Authors:Chua, G.L, Tang, X, Patra, T.A, Tan, S.M, Bhattacharjya, S.
Deposit date:2012-06-21
Release date:2012-07-04
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and Binding Interface of the Cytosolic Tails of aXb2 Integrin
To be Published
2LKE
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BU of 2lke by Molmil
Structures and Interaction Analyses of the Integrin Alpha-M Beta-2 Cytoplasmic Tails
Descriptor: Integrin alpha-M
Authors:Chua, G.L, Tang, X.Y, Amalraj, M, Bhattacharjya, S, Tan, S.M.
Deposit date:2011-10-11
Release date:2011-11-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structures and interaction analyses of the integrin alphaMbeta2 cytoplasmic tails
J.Biol.Chem., 2011
2ZGJ
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BU of 2zgj by Molmil
Crystal Structure of D86N-GzmM Complexed with Its Optimal Synthesized Substrate
Descriptor: Granzyme M, SSGKVPLS, SULFATE ION
Authors:Wu, L.F, Wang, L, Hua, G.Q, Liu, K, Zhai, Y.J, Sun, F, Fan, Z.S.
Deposit date:2008-01-22
Release date:2009-01-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for proteolytic specificity of the human apoptosis-inducing granzyme M
J.Immunol., 183, 2009
2ZKS
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BU of 2zks by Molmil
Structural insights into the proteolytic machinery of apoptosis-inducing Granzyme M
Descriptor: Granzyme M, SULFATE ION, hGzmM inhibitor
Authors:Wu, L.F, Wang, L, Hua, G.Q, Liu, K, Yang, X, Zhai, Y.J, Sun, F, Fan, Z.S.
Deposit date:2008-03-28
Release date:2009-03-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for proteolytic specificity of the human apoptosis-inducing granzyme M
J.Immunol., 183, 2009
2ZGH
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BU of 2zgh by Molmil
Crystal Structure of active granzyme M bound to its product
Descriptor: Granzyme M, SSGKVPL, SULFATE ION
Authors:Wu, L.F, Wang, L, Hua, G.Q, Liu, K, Zhai, Y.J, Sun, F, Fan, Z.S.
Deposit date:2008-01-22
Release date:2009-01-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structural basis for proteolytic specificity of the human apoptosis-inducing granzyme M
J.Immunol., 183, 2009
2ZGC
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BU of 2zgc by Molmil
Crystal Structure of Active Human Granzyme M
Descriptor: Granzyme M, SULFATE ION
Authors:Wu, L.F, Wang, L, Hua, G.Q, Liu, K, Zhai, Y.J, Sun, F, Fan, Z.S.
Deposit date:2008-01-21
Release date:2009-01-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural basis for proteolytic specificity of the human apoptosis-inducing granzyme M
J.Immunol., 183, 2009
5YMR
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BU of 5ymr by Molmil
The Crystal Structure of IseG
Descriptor: 2-hydroxyethylsulfonic acid, Formate acetyltransferase, GLYCEROL
Authors:Lin, L, Zhang, J, Xing, M, Hua, G, Guo, C, Hu, Y, Wei, Y, Ang, E, Zhao, H, Zhang, Y, Yuchi, Z.
Deposit date:2017-10-22
Release date:2019-03-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Radical-mediated C-S bond cleavage in C2 sulfonate degradation by anaerobic bacteria.
Nat Commun, 10, 2019
5UTF
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BU of 5utf by Molmil
Crystal Structure of a Stabilized DS-SOSIP.6mut BG505 gp140 HIV-1 Env Trimer, Containing Mutations I201C-P433C (DS), L154M, Y177W, N300M, N302M, T320L, I420M in Complex with Human Antibodies PGT122 and 35O22 at 4.3 A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35022 Heavy chain, ...
Authors:Pancera, M, Chuang, G.-Y, Xu, K, Kwong, P.D.
Deposit date:2017-02-14
Release date:2017-03-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.503 Å)
Cite:Structure-Based Design of a Soluble Prefusion-Closed HIV-1 Env Trimer with Reduced CD4 Affinity and Improved Immunogenicity.
J. Virol., 91, 2017

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