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PDB: 615 results

4QOS
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BU of 4qos by Molmil
CRYSTAL STRUCTURE OF PSPF(1-265) E108Q MUTANT bound to ADP
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:Darbari, V.C, Lawton, E, Lu, D, Burrows, P.C, Wiesler, S, Joly, N, Zhang, N, Zhang, X, Buck, M.
Deposit date:2014-06-20
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Molecular basis of nucleotide-dependent substrate engagement and remodeling by an AAA+ activator.
Nucleic Acids Res., 42, 2014
6ILC
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BU of 6ilc by Molmil
CRYSTAL STRUCTURE OF BAT MHC CLASS I PTAL-N*01:01 FOR 2.2 ANGSTROM
Descriptor: Beta-2-microglobulin, HEV-1, MHC class I antigen
Authors:Qu, Z.H, Zhang, N.Z, Xia, C.
Deposit date:2018-10-17
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and Peptidome of the Bat MHC Class I Molecule Reveal a Novel Mechanism Leading to High-Affinity Peptide Binding.
J Immunol., 202, 2019
6VJF
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BU of 6vjf by Molmil
The P-Loop K to A mutation of C. therm Vps1 GTPase-BSE
Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, Putative sorting protein Vps1
Authors:Tornabene, B.A, Varlakhanova, N.V, Chappie, J.S, Ford, M.G.J.
Deposit date:2020-01-15
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:Structural and functional characterization of the dominant negative P-loop lysine mutation in the dynamin superfamily protein Vps1.
Protein Sci., 29, 2020
3PWV
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BU of 3pwv by Molmil
An immmunodominant CTL epitope from rinderpest virus presented by cattle MHC class I molecule N*01801 (BoLA-A11)
Descriptor: 9-mer peptide from Hemagglutinin, Beta-2-microglobulin, MHC class I antigen
Authors:Li, X, Liu, J, Qi, J, Gao, F, Li, Q, Li, X, Zhang, N, Xia, C, Gao, G.F.
Deposit date:2010-12-09
Release date:2011-08-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.696 Å)
Cite:Two distinct conformations of a rinderpest virus epitope presented by bovine major histocompatibility complex class I N*01801: a host strategy to present featured peptides
J.Virol., 85, 2011
5D8W
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BU of 5d8w by Molmil
Structrue of a lucidum protein
Descriptor: Endoglucanase
Authors:Guo, R, Li, Q, Shang, N, Liu, G, Ko, T.P, Chen, C.C, Liu, W.
Deposit date:2015-08-18
Release date:2016-06-29
Last modified:2018-05-23
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Functional and structural analyses of a 1,4-beta-endoglucanase from Ganoderma lucidum.
Enzyme.Microb.Technol., 86, 2016
5D8Z
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BU of 5d8z by Molmil
Structrue of a lucidum protein
Descriptor: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, endoglucanase
Authors:Guo, R, Li, Q, Shang, N, Liu, G, Ko, T.P, Chen, C.C, Liu, W.
Deposit date:2015-08-18
Release date:2016-06-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Functional and structural analyses of a 1,4-beta-endoglucanase from Ganoderma lucidum.
Enzyme.Microb.Technol., 86, 2016
2ZTD
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BU of 2ztd by Molmil
MtRuvA Form III
Descriptor: GLYCEROL, Holliday junction ATP-dependent DNA helicase ruvA
Authors:Prabu, J.R, Thamotharan, S, Khanduja, J.S, Chandra, N.R, Muniyappa, K, Vijayan, M.
Deposit date:2008-10-01
Release date:2009-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic and modelling studies on Mycobacterium tuberculosis RuvA Additional role of RuvB-binding domain and inter species variability
Biochim.Biophys.Acta, 1794, 2009
6WA0
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BU of 6wa0 by Molmil
De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release
Descriptor: De novo designed receptor transmembrane domain proMP C3.1
Authors:Call, M.J, Call, M.E, Chandler, N.J, Nguyen, J.V, Trenker, R.
Deposit date:2020-03-24
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.484 Å)
Cite:De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release
To Be Published
6W9Y
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BU of 6w9y by Molmil
De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, De novo designed receptor transmembrane domain proMP 1.2
Authors:Call, M.J, Call, M.E, Chandler, N.J, Nguyen, J.V, Trenker, R.
Deposit date:2020-03-24
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release
To Be Published
6W9Z
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BU of 6w9z by Molmil
De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release
Descriptor: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, De novo designed receptor transmembrane domain ProMP C2.1
Authors:Call, M.J, Call, M.E, Chandler, N.J, Nguyen, J.V, Trenker, R.
Deposit date:2020-03-24
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release
To Be Published
8JST
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BU of 8jst by Molmil
GH11 family xylanase rMxylcd from the compost-soil metagenome
Descriptor: Endo-beta-1,4-xylanase rMxylcd, GLYCEROL
Authors:Wu, S.N, Zhang, N.Y, Wan, Q.
Deposit date:2023-06-20
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:GH11 family xylanase rMxylcd from the compost-soil metagenome
To Be Published
1PVZ
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BU of 1pvz by Molmil
Solution Structure of BmP07, A Novel Potassium Channel Blocker from Scorpion Buthus martensi Karsch, 15 structures
Descriptor: K+ toxin-like peptide
Authors:Wu, H, Zhang, N, Wang, Y, Zhang, Q, Ou, L, Li, M, Hu, G.
Deposit date:2003-06-29
Release date:2004-05-18
Last modified:2018-06-20
Method:SOLUTION NMR
Cite:Solution structure of BmKK2, a new potassium channel blocker from the venom of chinese scorpion Buthus martensi Karsch
PROTEINS, 55, 2004
6ILG
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BU of 6ilg by Molmil
CRYSTAL STRUCTURE OF BAT MHC CLASS I PTAL-N*01:01 FOR 2.6 ANGSTROM
Descriptor: Beta-2-microglobulin, HEV-1-P8L, MHC class I antigen
Authors:Qu, Z.H, Zhang, N.Z, Xia, C.
Deposit date:2018-10-18
Release date:2019-07-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and Peptidome of the Bat MHC Class I Molecule Reveal a Novel Mechanism Leading to High-Affinity Peptide Binding.
J Immunol., 202, 2019
5AYF
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BU of 5ayf by Molmil
Crystal structure of SET7/9 in complex with cyproheptadine
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(dibenzo[1,2-a:2',1'-d][7]annulen-11-ylidene)-1-methyl-piperidine, Histone-lysine N-methyltransferase SETD7, ...
Authors:Niwa, H, Handa, N, Takemoto, Y, Ito, A, Tomabechi, Y, Umehara, T, Shirouzu, M, Yoshida, M, Yokoyama, S.
Deposit date:2015-08-20
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:Identification of Cyproheptadine as an Inhibitor of SET Domain Containing Lysine Methyltransferase 7/9 (Set7/9) That Regulates Estrogen-Dependent Transcription
J.Med.Chem., 59, 2016
6KNM
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BU of 6knm by Molmil
Apelin receptor in complex with single domain antibody
Descriptor: Apelin receptor,Rubredoxin,Apelin receptor, Single domain antibody JN241, ZINC ION
Authors:Ma, Y.B, Ding, Y, Song, X, Ma, X, Li, X, Zhang, N, Song, Y, Sun, Y, Shen, Y, Zhong, W, Hu, L.A, Ma, Y.L, Zhang, M.Y.
Deposit date:2019-08-06
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure-guided discovery of a single-domain antibody agonist against human apelin receptor.
Sci Adv, 6, 2020
6NUI
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BU of 6nui by Molmil
Human Guanylate Kinase
Descriptor: Guanylate kinase
Authors:Sabo, T.M, Khan, N, Ban, D, Trigo-Mourino, P, Carneiro, M.G, Trent, J.O, Konrad, M, Lee, D.
Deposit date:2019-02-01
Release date:2019-06-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure and functional investigation of human guanylate kinase reveals allosteric networking and a crucial role for the enzyme in cancer.
J.Biol.Chem., 294, 2019
2ZTC
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BU of 2ztc by Molmil
MtRuvA Form II
Descriptor: GLYCEROL, Holliday junction ATP-dependent DNA helicase ruvA
Authors:Prabu, J.R, Thamotharan, S, Khanduja, J.S, Chandra, N.R, Muniyappa, K, Vijayan, M.
Deposit date:2008-10-01
Release date:2009-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic and modelling studies on Mycobacterium tuberculosis RuvA Additional role of RuvB-binding domain and inter species variability
Biochim.Biophys.Acta, 1794, 2009
3RBT
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BU of 3rbt by Molmil
Crystal structure of glutathione S-transferase Omega 3 from the silkworm Bombyx mori
Descriptor: GLYCEROL, Glutathione transferase o1
Authors:Chen, B.-Y, Ma, X.-X, Tan, X, Yang, J.-P, Zhang, N.-N, Li, W.-F, Chen, Y, Xia, Q, Zhou, C.-Z.
Deposit date:2011-03-29
Release date:2011-08-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-guided activity restoration of the silkworm glutathione transferase Omega GSTO3-3
J.Mol.Biol., 412, 2011
3TOE
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BU of 3toe by Molmil
Structure of Mth10b
Descriptor: DNA/RNA-binding protein Alba
Authors:Pan, X.M, Zhang, N, Liu, Y.F, Liu, X.
Deposit date:2011-09-05
Release date:2012-04-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:Molecular mechanism underlying the interaction of typical Sac10b family proteins with DNA.
Plos One, 7, 2012
2MUU
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BU of 2muu by Molmil
The Proteolytic Activity of Ubiquitin-specific Protease 28 Is Modulated by the N-terminal Domain
Descriptor: Ubiquitin carboxyl-terminal hydrolase 28
Authors:Wen, Y, Shi, L, Zhang, N.
Deposit date:2014-09-17
Release date:2016-04-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The N-terminal ubiquitin-binding region of ubiquitin-specific protease 28 modulates its deubiquitination function: NMR structural and mechanistic insights.
Biochem.J., 471, 2015
2MUX
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BU of 2mux by Molmil
SUMO2 non-covalently interacts with USP25 and downregulates its activity
Descriptor: Ubiquitin carboxyl-terminal hydrolase 25
Authors:Shi, L, Zhang, N, Wen, Y.
Deposit date:2014-09-18
Release date:2016-04-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:SUMO2 non-covalently interacts with USP25 and downregulates its activity
To be Published
4FA0
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BU of 4fa0 by Molmil
Crystal structure of human AdPLA to 2.65 A resolution
Descriptor: Group XVI phospholipase A1/A2
Authors:Lovell, S, Battaile, K.P, Addington, L, Zhang, N, Rao, J.L.U.M, Moise, A.R.
Deposit date:2012-05-21
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure/Function relationships of adipose phospholipase A2 containing a cys-his-his catalytic triad.
J.Biol.Chem., 287, 2012
4ENY
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BU of 4eny by Molmil
Crystal Structure of Pim-1 kinase in complex with (2E,5Z)-2-(2-chlorophenylimino)-5-(4-hydroxy-3-methoxybenzylidene)thiazolidin-4-one
Descriptor: (2Z,5Z)-2-[(2-chlorophenyl)imino]-5-(4-hydroxy-3-methoxybenzylidene)-1,3-thiazolidin-4-one, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Parker, L.J, Handa, N, Yokoyama, S.
Deposit date:2012-04-13
Release date:2012-08-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Flexibility of the P-loop of Pim-1 kinase: observation of a novel conformation induced by interaction with an inhibitor
Acta Crystallogr.,Sect.F, 68, 2012
5EUI
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BU of 5eui by Molmil
Structure of predicted ancestral pika hemoglobin
Descriptor: HBA protein, HBB protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Inoguchi, N, Chandrasekhar, N, Storz, J.F, Moriyama, H.
Deposit date:2015-11-18
Release date:2016-11-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:structure of predicted pika ancestral hemoglobin at 1.45 Angstroms resolution.
To Be Published
4C46
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BU of 4c46 by Molmil
ANDREI-N-LVPAS fused to GCN4 adaptors
Descriptor: BROMIDE ION, GENERAL CONTROL PROTEIN GCN4
Authors:Albrecht, R, Alva, V, Ammelburg, M, Baer, K, Basina, E, Boichenko, I, Bonhoeffer, F, Braun, V, Chaubey, M, Chauhan, N, Chellamuthu, V.R, Coles, M, Deiss, S, Ewers, C.P, Forouzan, D, Fuchs, A, Groemping, Y, Hartmann, M.D, Hernandez Alvarez, B, Jeganantham, A, Kalev, I, Koenninger, U, Koiwai, K, Kopec, K.O, Korycinski, M, Laudenbach, B, Lehmann, K, Leo, J.C, Linke, D, Marialke, J, Martin, J, Mechelke, M, Michalik, M, Noll, A, Patzer, S.I, Scharfenberg, F, Schueckel, M, Shahid, S.A, Sulz, E, Ursinus, A, Wuertenberger, S, Zhu, H.
Deposit date:2013-08-30
Release date:2013-09-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Your Personalized Protein Structure: Andrei N. Lupas Fused to GCN4 Adaptors.
J.Struct.Biol., 186, 2014

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