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PDB: 233 results

6LMH
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Structure of an ASFV-derived histone-like protein pA104R
Descriptor: pA104R
Authors:Wang, H, Qi, J, Chai, Y, Gao, F.
Deposit date:2019-12-25
Release date:2020-05-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:The structural basis of African swine fever virus pA104R binding to DNA and its inhibition by stilbene derivatives.
Proc.Natl.Acad.Sci.USA, 117, 2020
6JBT
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BU of 6jbt by Molmil
Complex structure of toripalimab-Fab and PD-1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain, ...
Authors:Guo, L, Tan, S, Chai, Y, Qi, J, Gao, G.F, Yan, J.
Deposit date:2019-01-26
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Glycosylation-independent binding of monoclonal antibody toripalimab to FG loop of PD-1 for tumor immune checkpoint therapy.
Mabs, 11, 2019
6G32
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BU of 6g32 by Molmil
Crystal structure of human geranylgeranyl diphosphate synthase mutant D188Y
Descriptor: GLYCEROL, Geranylgeranyl pyrophosphate synthase
Authors:Lisnyansky, M, Kapelushnik, N, Ben-Bassat, A, Marom, M, Loewenstein, A, Khananshvili, D, Giladi, M, Haitin, Y.
Deposit date:2018-03-24
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.281 Å)
Cite:Reduced Activity of Geranylgeranyl Diphosphate Synthase Mutant Is Involved in Bisphosphonate-Induced Atypical Fractures.
Mol. Pharmacol., 94, 2018
7CP2
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BU of 7cp2 by Molmil
Crystal structure of the African swine fever virus core shell protein p15
Descriptor: CP530R
Authors:Liu, K.F, Meng, Y.M, Chai, Y, Li, L.J, Sun, H, Gao, G.F, Tan, S.G, Qi, J.X.
Deposit date:2020-08-05
Release date:2020-10-28
Last modified:2021-05-19
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Crystal structure of the African swine fever virus core shell protein p15
Biosaf Health, 2021
5WWJ
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BU of 5wwj by Molmil
Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 1)
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-24 alpha chain, ...
Authors:Zhao, M, Liu, K, Chai, Y, Qi, J, Liu, J, Gao, G.F.
Deposit date:2017-01-01
Release date:2018-01-17
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 1).
To Be Published
5XJ4
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BU of 5xj4 by Molmil
Complex structure of durvalumab-scFv/PD-L1
Descriptor: Programmed cell death 1 ligand 1, durvalumab-VH, durvalumab-VL
Authors:Tan, S, Liu, K, Chai, Y, Gao, G.F, Qi, J.
Deposit date:2017-04-29
Release date:2018-04-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Distinct PD-L1 binding characteristics of therapeutic monoclonal antibody durvalumab
Protein Cell, 9, 2018
7E57
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BU of 7e57 by Molmil
Crystal structure of murine GITR-GITRL complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor necrosis factor ligand superfamily member 18, Tumor necrosis factor receptor superfamily member 18, ...
Authors:Zhao, M, Tan, S, Fu, L, Chai, Y, Qi, J, Gao, G.F.
Deposit date:2021-02-18
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.302 Å)
Cite:Atypical TNF-TNFR superfamily binding interface in the GITR-GITRL complex for T cell activation.
Cell Rep, 36, 2021
5WWI
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BU of 5wwi by Molmil
Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 1)
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-24 alpha chain, ...
Authors:Zhao, M, Liu, K, Chai, Y, Qi, J, Liu, J, Gao, G.F.
Deposit date:2017-01-01
Release date:2018-01-17
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (3.194 Å)
Cite:Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 1).
To Be Published
7CZF
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Crystal structure of Kaposi Sarcoma associated herpesvirus (KSHV ) gHgL in complex with the ligand binding domian (LBD) of EphA2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Su, C, Wu, L.L, Song, H, Chai, Y, Qi, J.X, Yan, J.H, Gao, G.F.
Deposit date:2020-09-08
Release date:2020-10-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Molecular basis of EphA2 recognition by gHgL from gammaherpesviruses.
Nat Commun, 11, 2020
6J2I
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BU of 6j2i by Molmil
Crystal structure of bat (Pteropus Alecto) MHC class I Ptal-N*01:01 in complex with H17N10 influenza-like virus-derivrd peptide H17N10-NP
Descriptor: Beta-2-microglobulin, H17N10-NP, Ptal-N*01:01
Authors:Lu, D, Liu, K.F, Yue, C, Lu, Q, Cheng, H, Chai, Y, Qi, J.X, Gao, G.F, Liu, W.J.
Deposit date:2019-01-01
Release date:2019-09-18
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Peptide presentation by bat MHC class I provides new insight into the antiviral immunity of bats.
Plos Biol., 17, 2019
6SYG
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BU of 6syg by Molmil
Crystal structure of the Cyclic Nucleotide-Binding Homology Domain of the human KCNH2 channel
Descriptor: Potassium voltage-gated channel subfamily H member 2
Authors:Ben-Bassat, A, Giladi, M, Haitin, Y.
Deposit date:2019-09-27
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of KCNH2 cyclic nucleotide-binding homology domain reveals a functionally vital salt-bridge.
J.Gen.Physiol., 152, 2020
6J2J
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BU of 6j2j by Molmil
Crystal structure of bat (Pteropus Alecto) MHC class I Ptal-N*01:01 in complex with MERS-CoV-derived peptide MERS-CoV-S3
Descriptor: Beta-2-microglobulin, MERS-CoV-S3, Ptal-N*01:01
Authors:Lu, D, Liu, K.F, Yue, C, Lu, Q, Cheng, H, Chai, Y, Qi, J.X, Gao, G.F, Liu, W.J.
Deposit date:2019-01-01
Release date:2019-09-18
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Peptide presentation by bat MHC class I provides new insight into the antiviral immunity of bats.
Plos Biol., 17, 2019
6K7T
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BU of 6k7t by Molmil
Crystal structure of bat (Pteropus Alecto) MHC class I Ptal-N*01:01 in complex with Hendra virus-derived peptide HeV1--human beta-2 microglobulin
Descriptor: Beta-2-microglobulin, HeV1, MHC class I antigen
Authors:Lu, D, Liu, K.F, Zhang, D, Yue, C, Lu, Q, Cheng, H, Chai, Y, Qi, J.X, Gao, F.G, Liu, W.J.
Deposit date:2019-06-08
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Peptide presentation by bat MHC class I provides new insight into the antiviral immunity of bats.
Plos Biol., 17, 2019
7CZE
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BU of 7cze by Molmil
Crystal structure of Epstein-Barr virus (EBV) gHgL and in complex with the ligand binding domian (LBD) of EphA2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein H, Envelope glycoprotein L, ...
Authors:Su, C, Wu, L.L, Song, H, Chai, Y, Qi, J.X, Yan, J.H, Gao, G.F.
Deposit date:2020-09-08
Release date:2020-10-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular basis of EphA2 recognition by gHgL from gammaherpesviruses.
Nat Commun, 11, 2020
6KYL
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BU of 6kyl by Molmil
Crystal Structure of Phosphatidic acid Transporter Ups1/Mdm35 in Complex with (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate
Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate, Mitochondrial distribution and morphology protein 35, Protein UPS1, ...
Authors:Lu, J, Chan, K.C, Zhai, Y, Fan, J, Sun, F.
Deposit date:2019-09-19
Release date:2019-10-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:Molecular mechanism of mitochondrial phosphatidate transfer by Ups1.
Commun Biol, 3, 2020
6J15
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BU of 6j15 by Molmil
Complex structure of GY-5 Fab and PD-1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, GY-5 heavy chain Fab, ...
Authors:Chen, D, Tan, S, Zhang, H, Wang, H, Chai, Y, Qi, J, Yan, J, Gao, G.F.
Deposit date:2018-12-27
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The FG Loop of PD-1 Serves as a "Hotspot" for Therapeutic Monoclonal Antibodies in Tumor Immune Checkpoint Therapy.
Iscience, 14, 2019
6K7U
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BU of 6k7u by Molmil
Crystal structure of beta-2 microglobulin (beta2m) of Bat (Pteropus Alecto)
Descriptor: Bat beta-2-microglobulin
Authors:Lu, D, Liu, K.F, Zhang, D, Yue, C, Lu, Q, Cheng, H, Chai, Y, Qi, J.X, Gao, F.G, Liu, W.J.
Deposit date:2019-06-08
Release date:2019-09-18
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Peptide presentation by bat MHC class I provides new insight into the antiviral immunity of bats.
Plos Biol., 17, 2019
7CU5
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BU of 7cu5 by Molmil
N-Glycosylation of PD-1 and glycosylation dependent binding of PD-1 specific monoclonal antibody camrelizumab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Programmed cell death protein 1, ...
Authors:Liu, K.F, Tan, S.G, Jin, W.J, Guan, J.W, Wang, W.L, Sun, H, Qi, J.X, Yan, J.H, Chai, Y, Wang, Z.F, Chu, X.D, Gao, G.F.
Deposit date:2020-08-21
Release date:2020-10-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:N-glycosylation of PD-1 promotes binding of camrelizumab.
Embo Rep., 21, 2020
5GSB
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BU of 5gsb by Molmil
Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide 37-3
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-D alpha chain, ...
Authors:Liu, K, Chai, Y, Qi, J, Tan, W, Liu, W.J, Gao, G.F.
Deposit date:2016-08-15
Release date:2017-07-12
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Protective T Cell Responses Featured by Concordant Recognition of Middle East Respiratory Syndrome Coronavirus-Derived CD8+ T Cell Epitopes and Host MHC.
J. Immunol., 198, 2017
7C88
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BU of 7c88 by Molmil
Complex structure of JS003 and PD-L1
Descriptor: JS003 Heavy chain, JS003 Light chain, Programmed cell death 1 ligand 1
Authors:Bi, X, Shi, R, Chai, Y, Qi, J, Yan, J, Tan, S.
Deposit date:2020-05-29
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Identification of a hotspot on PD-L1 for pH-dependent binding by monoclonal antibodies for tumor therapy.
Signal Transduct Target Ther, 5, 2020
7XQU
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BU of 7xqu by Molmil
The structure of FLA-E*00301/EM-FECV-10
Descriptor: Beta-2-microglobulin, MHC class I antigen, peptide from Nucleoprotein
Authors:Qiao, P.W, Yue, C, Peng, W.Y, Liu, K.F, Huo, S.T, Zhang, D, Chai, Y, Qi, J.X, Sun, Z.Y, Gao, G.F, Liu, W.J, Wu, G.Z.
Deposit date:2022-05-08
Release date:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Analysis of the characteristics of feline major histocompatibility complex class I molecules cross-presenting coronavirus peptides
To Be Published
6Y2H
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BU of 6y2h by Molmil
The crystal structure of human chloride intracellular channel protein 5
Descriptor: Chloride intracellular channel protein 5, THIOCYANATE ION
Authors:Ferofontov, A, Giladi, M, Haitin, Y.
Deposit date:2020-02-16
Release date:2020-05-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.154 Å)
Cite:Conserved cysteine dioxidation enhances membrane interaction of human Cl - intracellular channel 5.
Faseb J., 34, 2020
6R4V
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BU of 6r4v by Molmil
Crystal structure of human geranylgeranyl diphosphate synthase bound to ibandronate
Descriptor: GLYCEROL, Geranylgeranyl pyrophosphate synthase, IBANDRONATE, ...
Authors:Lisnyansky, M, Giladi, M, Haitin, Y.
Deposit date:2019-03-24
Release date:2019-09-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Metal Coordination Is Crucial for Geranylgeranyl Diphosphate Synthase-Bisphosphonate Interactions: A Crystallographic and Computational Analysis.
Mol.Pharmacol., 96, 2019
7E5M
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BU of 7e5m by Molmil
crystal structure of trans assembled human TROP-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor-associated calcium signal transducer 2
Authors:Sun, M, Zhang, H, Chai, Y, Qi, J, Gao, G.F, Tan, S.
Deposit date:2021-02-19
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into the cis and trans assembly of human trophoblast cell surface antigen 2.
Iscience, 24, 2021
3KO1
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BU of 3ko1 by Molmil
Cystal structure of thermosome from Acidianus tengchongensis strain S5
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperonin
Authors:Huo, Y, Zhang, K, Hu, Z, Wang, L, Zhai, Y, Zhou, Q, Lander, G, He, Y, Zhu, J, Xu, W, Dong, Z, Sun, F.
Deposit date:2009-11-12
Release date:2010-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of group II chaperonin in the open state.
Structure, 18, 2010

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