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PDB: 175 results

1TR9
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BU of 1tr9 by Molmil
Structure of beta-hexosaminidase from Vibrio cholerae
Descriptor: Beta-hexosaminidase
Authors:Gorman, J, Shapiro, L, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2004-06-21
Release date:2004-12-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of beta-hexosaminidase from Vibrio cholerae
To be Published
6NF2
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BU of 6nf2 by Molmil
Cryo-EM structure of vaccine-elicited antibody 0PV-c.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Descriptor: 0PV-c.01 Heavy Chain, 0PV-c.01 Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2018-12-18
Release date:2019-07-24
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization.
Cell, 178, 2019
8D21
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BU of 8d21 by Molmil
Cryo-EM structure of the VRC321 clinical trial, vaccine-elicited, human antibody 1B06 in complex with a stabilized NC99 HA trimer
Descriptor: 1B06 Heavy Chain, 1B06 Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-05-27
Release date:2023-04-12
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:An influenza H1 hemagglutinin stem-only immunogen elicits a broadly cross-reactive B cell response in humans.
Sci Transl Med, 15, 2023
8EB4
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BU of 8eb4 by Molmil
Gordonia phage Ziko
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-08-30
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8E16
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BU of 8e16 by Molmil
Mycobacterium phage Che8
Descriptor: Major capsid protein, gp6
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-08-09
Release date:2023-02-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8ECO
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BU of 8eco by Molmil
Microbacterium phage Oxtober96
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8EC2
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BU of 8ec2 by Molmil
Mycobacterium phage Adephagia
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-01
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8ECN
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BU of 8ecn by Molmil
Mycobacterium phage Ogopogo
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8ECJ
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BU of 8ecj by Molmil
Mycobacterium phage Cain
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8EC8
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BU of 8ec8 by Molmil
Mycobacterium phage Bobi
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-01
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8ECI
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BU of 8eci by Molmil
Arthrobacter phage Bridgette
Descriptor: Decoration protein, Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8ECK
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BU of 8eck by Molmil
Gordonia phage Cozz
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8T5C
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BU of 8t5c by Molmil
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 8.11G Heavy Chain, 8.11G Light Chain, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2023-06-13
Release date:2024-01-03
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Cleavage-intermediate Lassa virus trimer elicits neutralizing responses, identifies neutralizing nanobodies, and reveals an apex-situated site-of-vulnerability.
Nat Commun, 15, 2024
8DUA
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BU of 8dua by Molmil
SIV E660.CR54 SOS-2P Env Trimer with ITS92.02
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, Envelope glycoprotein gp41, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-07-27
Release date:2022-10-26
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (4.32 Å)
Cite:Cryo-EM structures of prefusion SIV envelope trimer.
Nat.Struct.Mol.Biol., 29, 2022
8DVD
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BU of 8dvd by Molmil
Cryo-EM structure of SIVmac239 SOS-2P Env trimer in complex with human bNAb PGT145
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-07-28
Release date:2022-11-16
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Cryo-EM structures of prefusion SIV envelope trimer.
Nat.Struct.Mol.Biol., 29, 2022
8GAS
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BU of 8gas by Molmil
vFP48.02 Fab in complex with BG505 DS-SOSIP Env trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2023-02-23
Release date:2023-04-19
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.04 Å)
Cite:Diverse Murine Vaccinations Reveal Distinct Antibody Classes to Target Fusion Peptide and Variation in Peptide Length to Improve HIV Neutralization.
J.Virol., 97, 2023
8G85
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BU of 8g85 by Molmil
vFP52.02 Fab in complex with BG505 DS-SOSIP Env trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2023-02-17
Release date:2023-04-19
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.99 Å)
Cite:Diverse Murine Vaccinations Reveal Distinct Antibody Classes to Target Fusion Peptide and Variation in Peptide Length to Improve HIV Neutralization.
J.Virol., 97, 2023
8GIU
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BU of 8giu by Molmil
Mycobacterium phage Patience
Descriptor: Capsid protein, gp_22 (Minor Capsid Protein), gp_4 (capsid accessory protein)
Authors:Podgorski, J.M, White, S.J.
Deposit date:2023-03-14
Release date:2023-05-24
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.39 Å)
Cite:A novel accessory protein stabilizes the capsid of two actinobacteriophages
To Be Published
8SAJ
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BU of 8saj by Molmil
Mycobacterium phage Adjutor
Descriptor: HNH endonuclease, Major capsid protein, gp_16 (Minor Capsid Protein)
Authors:Podgorski, J.M, White, S.J.
Deposit date:2023-04-01
Release date:2024-04-03
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:A novel accessory protein stabilizes the capsid of two actinobacteriophages
To Be Published
8FIS
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BU of 8fis by Molmil
Structure of Bispecific CAP256V2LS-J3 Fab in complex with BG505 DS-SOSIP.664
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-12-16
Release date:2023-02-01
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Bispecific antibody CAP256.J3LS targets V2-apex and CD4-binding sites with high breadth and potency.
Mabs, 15, 2023
8FLW
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BU of 8flw by Molmil
Cryo-EM Structure of PGT145 DU303 Fab in complex with BG505 DS-SOSIP.664
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-12-22
Release date:2023-05-31
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design.
Cell Rep, 42, 2023
8FK5
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BU of 8fk5 by Molmil
Cryo-EM Structure of PG9RSH DU011 Fab in complex with BG505 DS-SOSIP.664
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-12-20
Release date:2023-05-31
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design.
Cell Rep, 42, 2023
8FL1
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BU of 8fl1 by Molmil
Cryo-EM Structure of PG9RSH DU025 Fab in complex with BG505 DS-SOSIP.664
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-12-21
Release date:2023-05-31
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design.
Cell Rep, 42, 2023
6OSY
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BU of 6osy by Molmil
Cryo-EM structure of vaccine-elicited antibody 0PV-a.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Descriptor: 0PV-a.01 Heavy, 0PV-a.01 Light, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2019-05-02
Release date:2019-07-24
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization.
Cell, 178, 2019
6TYB
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BU of 6tyb by Molmil
Isolation and Structure of an Antibody that Fully Neutralizes Isolate SIVmac239 Reveals Functional Similarity of SIV and HIV Glycan Shields
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2019-08-08
Release date:2019-10-02
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Isolation and Structure of an Antibody that Fully Neutralizes Isolate SIVmac239 Reveals Functional Similarity of SIV and HIV Glycan Shields.
Immunity, 51, 2019

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PDB entries from 2024-11-06

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