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PDB: 173 results

6VTT
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BU of 6vtt by Molmil
Cryo-EM Structure of CAP256-VRC26.25 Fab bound to HIV-1 Env trimer CAP256.wk34.c80 SOSIP.RnS2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2020-02-13
Release date:2020-04-08
Last modified:2021-10-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of Super-Potent Antibody CAP256-VRC26.25 in Complex with HIV-1 Envelope Reveals a Combined Mode of Trimer-Apex Recognition.
Cell Rep, 31, 2020
6VRY
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BU of 6vry by Molmil
Structure of NCI09 fab in complex with SIV V2 peptide
Descriptor: NCI09 heavy chain, NCI09 light chain, SIV V2 peptide, ...
Authors:Gorman, J, Ahmadi, M, Kwong, P.D.
Deposit date:2020-02-10
Release date:2020-12-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:HIV vaccine candidate with V1 deletion reveals virus vulnerability to V2 antibodies
Iscience, 2020
6NF2
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BU of 6nf2 by Molmil
Cryo-EM structure of vaccine-elicited antibody 0PV-c.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Descriptor: 0PV-c.01 Heavy Chain, 0PV-c.01 Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2018-12-18
Release date:2019-07-24
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization.
Cell, 178, 2019
6XRT
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BU of 6xrt by Molmil
Cryo-EM structure of SHIV-elicited RHA1.V2.01 in complex with HIV-1 Env BG505 DS-SOSIP.664
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2020-07-13
Release date:2020-10-07
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Recapitulation of HIV-1 Env-antibody coevolution in macaques leading to neutralization breadth.
Science, 371, 2021
6OT1
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BU of 6ot1 by Molmil
Cryo-EM structure of vaccine-elicited antibody 0PV-b.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Descriptor: 0PV-b.01 heavy, 0PV-b.01 light, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2019-05-02
Release date:2019-08-07
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization.
Cell, 178, 2019
6OSY
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BU of 6osy by Molmil
Cryo-EM structure of vaccine-elicited antibody 0PV-a.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Descriptor: 0PV-a.01 Heavy, 0PV-a.01 Light, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2019-05-02
Release date:2019-07-24
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization.
Cell, 178, 2019
8GAS
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BU of 8gas by Molmil
vFP48.02 Fab in complex with BG505 DS-SOSIP Env trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2023-02-23
Release date:2023-04-19
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY (4.04 Å)
Cite:Diverse Murine Vaccinations Reveal Distinct Antibody Classes to Target Fusion Peptide and Variation in Peptide Length to Improve HIV Neutralization.
J.Virol., 97, 2023
8G85
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BU of 8g85 by Molmil
vFP52.02 Fab in complex with BG505 DS-SOSIP Env trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2023-02-17
Release date:2023-04-19
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY (3.99 Å)
Cite:Diverse Murine Vaccinations Reveal Distinct Antibody Classes to Target Fusion Peptide and Variation in Peptide Length to Improve HIV Neutralization.
J.Virol., 97, 2023
8GIU
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BU of 8giu by Molmil
Mycobacterium phage Patience
Descriptor: Capsid protein, gp_22 (Minor Capsid Protein), gp_4 (capsid accessory protein)
Authors:Podgorski, J.M, White, S.J.
Deposit date:2023-03-14
Release date:2023-05-24
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.39 Å)
Cite:A novel accessory protein stabilizes the capsid of two actinobacteriophages
To Be Published
6WXL
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BU of 6wxl by Molmil
Cryo-EM structure of the VRC315 clinical trial, vaccine-elicited, human antibody 1D12 in complex with an H7 SH13 HA trimer
Descriptor: 1D12 Light chain, 1D21 Heavy chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2020-05-11
Release date:2021-06-09
Last modified:2022-06-22
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Structure of an influenza group 2-neutralizing antibody targeting the hemagglutinin stem supersite.
Structure, 2022
7UWF
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BU of 7uwf by Molmil
Human Rix1 sub-complex scaffold
Descriptor: Modulator of non-genomic activity of estrogen receptor, WD repeat-containing protein 18
Authors:Gordon, J, Stanley, R.E.
Deposit date:2022-05-03
Release date:2022-11-02
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM reveals the architecture of the PELP1-WDR18 molecular scaffold.
Nat Commun, 13, 2022
8T5C
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BU of 8t5c by Molmil
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 8.11G Heavy Chain, 8.11G Light Chain, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2023-06-13
Release date:2024-01-03
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Cleavage-intermediate Lassa virus trimer elicits neutralizing responses, identifies neutralizing nanobodies, and reveals an apex-situated site-of-vulnerability.
Nat Commun, 15, 2024
8D21
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BU of 8d21 by Molmil
Cryo-EM structure of the VRC321 clinical trial, vaccine-elicited, human antibody 1B06 in complex with a stabilized NC99 HA trimer
Descriptor: 1B06 Heavy Chain, 1B06 Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-05-27
Release date:2023-04-12
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:An influenza H1 hemagglutinin stem-only immunogen elicits a broadly cross-reactive B cell response in humans.
Sci Transl Med, 15, 2023
8ECO
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BU of 8eco by Molmil
Microbacterium phage Oxtober96
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8EC2
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BU of 8ec2 by Molmil
Mycobacterium phage Adephagia
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-01
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8ECJ
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BU of 8ecj by Molmil
Mycobacterium phage Cain
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8ECN
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BU of 8ecn by Molmil
Mycobacterium phage Ogopogo
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8EB4
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BU of 8eb4 by Molmil
Gordonia phage Ziko
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-08-30
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8ECI
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BU of 8eci by Molmil
Arthrobacter phage Bridgette
Descriptor: Decoration protein, Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8E16
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BU of 8e16 by Molmil
Mycobacterium phage Che8
Descriptor: Major capsid protein, gp6
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-08-09
Release date:2023-02-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8EC8
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BU of 8ec8 by Molmil
Mycobacterium phage Bobi
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-01
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8ECK
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BU of 8eck by Molmil
Gordonia phage Cozz
Descriptor: Major capsid protein
Authors:Podgorski, J.M, White, S.J.
Deposit date:2022-09-02
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability.
Structure, 31, 2023
8SAJ
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BU of 8saj by Molmil
Mycobacterium phage Adjutor
Descriptor: HNH endonuclease, Major capsid protein, gp_16 (Minor Capsid Protein)
Authors:Podgorski, J.M, White, S.J.
Deposit date:2023-04-01
Release date:2024-04-03
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:A novel accessory protein stabilizes the capsid of two actinobacteriophages
To Be Published
5VGJ
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BU of 5vgj by Molmil
Crystal Structure of the Human Fab VRC38.01, an HIV-1 V1V2-Directed Neutralizing Antibody Isolated from Donor N90, bound to a scaffolded WITO V1V2 domain
Descriptor: 1FD6-V1V2-WITO, 2-acetamido-2-deoxy-beta-D-glucopyranose, VRC38.01 Fab Heavy Chain, ...
Authors:Gorman, J, Li, J, Kwong, P.D.
Deposit date:2017-04-11
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.456 Å)
Cite:Virus-like Particles Identify an HIV V1V2 Apex-Binding Neutralizing Antibody that Lacks a Protruding Loop.
Immunity, 46, 2017
5ESV
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BU of 5esv by Molmil
Crystal Structure of Broadly Neutralizing Antibody CH03, Isolated from Donor CH0219, in Complex with Scaffolded Trimeric HIV-1 Env V1V2 Domain from the Clade C Superinfecting Strain of Donor CAP256.
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase,Envelope glycoprotein gp160, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gorman, J, Yang, M, Kwong, P.D.
Deposit date:2015-11-17
Release date:2015-12-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.105 Å)
Cite:Structures of HIV-1 Env V1V2 with broadly neutralizing antibodies reveal commonalities that enable vaccine design.
Nat.Struct.Mol.Biol., 23, 2016

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