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PDB: 43 件

1MZU
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Crystal Structure of the Photoactive Yellow Protein Domain from the Sensor Histidine Kinase Ppr from Rhodospirillum centenum
分子名称: 4'-HYDROXYCINNAMIC ACID, PPR
著者Rajagopal, S, Moffat, K.
登録日2002-10-09
公開日2003-02-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of a Photoactive Yellow Protein from a Sensor Histidine Kinase: Conformational Variability and Signal Transduction
Proc.Natl.Acad.Sci.USA, 100, 2003
1T1B
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BU of 1t1b by Molmil
Late intermediate IL2 from time-resolved crystallography of the E46Q mutant of PYP
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Rajagopal, S, Anderson, S, Srajer, V, Schmidt, M, Pahl, R, Moffat, K.
登録日2004-04-15
公開日2005-01-18
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A Structural Pathway for Signaling in the E46Q Mutant of Photoactive Yellow Protein
Structure, 13, 2005
1T1C
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BU of 1t1c by Molmil
Late intermediate IL3 from time-resolved crystallography of the E46Q mutant of PYP
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Rajagopal, S, Anderson, S, Srajer, V, Schmidt, M, Pahl, R, Moffat, K.
登録日2004-04-15
公開日2005-01-18
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A Structural Pathway for Signaling in the E46Q Mutant of Photoactive Yellow Protein
Structure, 13, 2005
1T1A
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BU of 1t1a by Molmil
Late intermediate IL1 from time-resolved crystallography of the E46Q mutant of PYP
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Rajagopal, S, Anderson, S, Srajer, V, Schmidt, M, Pahl, R, Moffat, K.
登録日2004-04-15
公開日2005-01-18
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A Structural Pathway for Signaling in the E46Q Mutant of Photoactive Yellow Protein
Structure, 13, 2005
1T19
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Early intermediate IE2 from time-resolved crystallography of the E46Q mutant of PYP
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Rajagopal, S, Anderson, S, Srajer, V, Schmidt, M, Pahl, R, Moffat, K.
登録日2004-04-15
公開日2005-01-18
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A Structural Pathway for Signaling in the E46Q Mutant of Photoactive Yellow Protein
Structure, 13, 2005
1T18
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BU of 1t18 by Molmil
Early intermediate IE1 from time-resolved crystallography of the E46Q mutant of PYP
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Rajagopal, S, Anderson, S, Srajer, V, Schmidt, M, Pahl, R, Moffat, K.
登録日2004-04-15
公開日2005-01-18
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A Structural Pathway for Signaling in the E46Q Mutant of Photoactive Yellow Protein
Structure, 13, 2005
4HF2
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BU of 4hf2 by Molmil
Crystal Structure of E43A IscR mutant bound to its promoter
分子名称: DNA (29-MER), HTH-type transcriptional regulator IscR
著者Rajagopalan, S.R, Phillips, K.J.
登録日2012-10-04
公開日2013-05-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity.
Nat.Struct.Mol.Biol., 20, 2013
4HF1
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Crystal Structure of IscR bound to its promoter
分子名称: DNA (29-MER), HTH-type transcriptional regulator IscR
著者Rajagopalan, S.R, Phillips, K.J.
登録日2012-10-04
公開日2013-05-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.222 Å)
主引用文献Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity.
Nat.Struct.Mol.Biol., 20, 2013
4HF0
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Crystal Structure of Apo IscR
分子名称: HTH-type transcriptional regulator IscR, SULFATE ION
著者Rajagopalan, S.R, Phillips, K.J.
登録日2012-10-04
公開日2013-05-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity.
Nat.Struct.Mol.Biol., 20, 2013
3T03
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BU of 3t03 by Molmil
Crystal structure of PPAR gamma ligand binding domain in complex with a novel partial agonist GQ-16
分子名称: (5Z)-5-(5-bromo-2-methoxybenzylidene)-3-(4-methylbenzyl)-1,3-thiazolidine-2,4-dione, Nuclear receptor coactivator 1, Peroxisome proliferator-activated receptor gamma
著者Rajagopalan, S, Webb, P, Baxter, J.D, Brennan, R.G, Phillips, K.J.
登録日2011-07-19
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献GQ-16, a novel peroxisome proliferator-activated receptor (PPAR gamma) ligand, promotes insulin sensitization without weight gain.
J.Biol.Chem., 287, 2012
5BQD
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BU of 5bqd by Molmil
Crystal Structure of TBX5 (1-239) Dimer
分子名称: MAGNESIUM ION, T-box transcription factor TBX5
著者Pradhan, L, Gopal, S, Patel, A, Kasahara, H, Nam, H.J.
登録日2015-05-28
公開日2016-03-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.583 Å)
主引用文献Intermolecular Interactions of Cardiac Transcription Factors NKX2.5 and TBX5.
Biochemistry, 55, 2016
3V45
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Crystal Structure of de novo designed serine hydrolase OSH55, Northeast Structural Genomics Consortium Target OR130
分子名称: CHLORIDE ION, SODIUM ION, Serine hydrolase OSH55
著者Kuzin, A, Su, M, Seetharaman, J, Maglaqui, M, Xiao, R, Kohan, E, Rajagopalan, S, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2011-12-14
公開日2012-01-04
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Design of activated serine-containing catalytic triads with atomic-level accuracy.
Nat.Chem.Biol., 10, 2014
1S1Y
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BU of 1s1y by Molmil
Photoactivated chromophore conformation in Photoactive Yellow Protein (E46Q mutant) from 10 microseconds to 3 milliseconds
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Anderson, S, Srajer, V, Pahl, R, Rajagopal, S, Schotte, F, Anfinrud, P, Wulff, M, Moffat, K.
登録日2004-01-07
公開日2004-06-15
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein
Structure, 12, 2004
1S1Z
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Photoactivated chromophore conformation in Photoactive Yellow Protein (E46Q mutant) from 10 to 500 nanoseconds
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive Yellow Protein
著者Anderson, S, Srajer, V, Pahl, R, Rajagopal, S, Schotte, F, Anfinrud, P, Wulff, M, Moffat, K.
登録日2004-01-07
公開日2004-06-15
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein
Structure, 12, 2004
1S4R
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BU of 1s4r by Molmil
Structure of a reaction intermediate in the photocycle of PYP extracted by a SVD-driven analysis
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Schmidt, M, Pahl, R, Srajer, V, Anderson, S, Ren, Z, Ihee, H, Rajagopal, S, Moffat, K.
登録日2004-01-17
公開日2004-04-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Protein kinetics: Structures of intermediates and reaction mechanism from time-resolved x-ray data
Proc.Natl.Acad.Sci.USA, 101, 2004
1S4S
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BU of 1s4s by Molmil
Reaction Intermediate in the Photocycle of PYP, intermediate occupied between 100 micro-seconds to 5 milli-seconds
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Schmidt, M, Pahl, R, Srajer, V, Anderson, S, Ren, Z, Ihee, H, Rajagopal, S, Moffat, K.
登録日2004-01-17
公開日2004-04-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Protein kinetics: Structures of intermediates and reaction mechanism from time-resolved x-ray data
Proc.Natl.Acad.Sci.USA, 101, 2004
6P9E
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BU of 6p9e by Molmil
Crystal structure of IL-36gamma complexed to A-552
分子名称: (2S)-2-{[4-(3-amino-4-methylphenyl)-6-methylpyrimidin-2-yl]oxy}-3-methoxy-3,3-diphenylpropanoic acid, Interleukin-36 gamma
著者Argiriadi, M.A, Todorovic, T, Su, Z, Putman, B, Kakavas, S.J, Salte, K.M, McDonald, H.A, Wetter, J.B, Paulsboe, S.E, Sun, Q, Gerstein, C.E, Medina, L, Sielaff, B, Sadhukhan, R, Stockmann, H, Richardson, P.L, Qiu, W, Henry, R.F, Herold, J.M, Shotwell, J.B, McGaraughty, S.P, Honore, P, Gopalakrishnan, S.M, Sun, C.C, Scott, V.E.
登録日2019-06-10
公開日2019-06-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Small Molecule IL-36 gamma Antagonist as a Novel Therapeutic Approach for Plaque Psoriasis.
Sci Rep, 9, 2019
5U0P
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BU of 5u0p by Molmil
Cryo-EM structure of the transcriptional Mediator
分子名称: Mediator complex subunit 10, Mediator complex subunit 11, Mediator complex subunit 14, ...
著者Tsai, K.-L, Yu, X, Gopalan, S, Chao, T.-C, Zhang, Y, Florens, L, Washburn, M.P, Murakami, K, Conaway, R.C, Conaway, J.W, Asturias, F.
登録日2016-11-26
公開日2017-03-08
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Mediator structure and rearrangements required for holoenzyme formation.
Nature, 544, 2017
5U0S
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Cryo-EM structure of the Mediator-RNAPII complex
分子名称: Mediator complex subunit 10, Mediator complex subunit 11, Mediator complex subunit 14, ...
著者Tsai, K.-L, Yu, X, Gopalan, S, Chao, T.-C, Zhang, Y, Florens, L, Washburn, M.P, Murakami, K, Conaway, R.C, Conaway, J.W, Asturias, F.
登録日2016-11-26
公開日2017-03-08
最終更新日2020-01-01
実験手法ELECTRON MICROSCOPY (7.8 Å)
主引用文献Mediator structure and rearrangements required for holoenzyme formation.
Nature, 544, 2017
8GOD
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BU of 8god by Molmil
Co-crystal structure of Human Protein-arginine deiminase type-4 (PAD4) with small molecule inhibitor JBI-589
分子名称: Protein-arginine deiminase type-4, [(3~{R})-3-azanylpiperidin-1-yl]-[2-[1-[(4-fluorophenyl)methyl]indol-2-yl]-3-methyl-imidazo[1,2-a]pyridin-7-yl]methanone
著者Swaminathan, S, Birudukota, S, Vaithilingam, K, Kandan, S, Asaithambi, K, Kathiresan, N, Gosu, R, Rajagopal, S, Sadhu, N.
登録日2022-08-24
公開日2023-03-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Alleviation of arthritis through prevention of neutrophil extracellular traps by an orally available inhibitor of protein arginine deiminase 4.
Sci Rep, 13, 2023
4KYB
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BU of 4kyb by Molmil
Crystal Structure of de novo designed serine hydrolase OSH55.14_E3, Northeast Structural Genomics Consortium Target OR342
分子名称: Designed Protein OR342, PHOSPHATE ION
著者Kuzin, A, Lew, S, Rajagopalan, S, Seetharaman, J, Mao, L, Xiao, R, Lee, D, Raja, S, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2013-05-28
公開日2013-06-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.909 Å)
主引用文献Northeast Structural Genomics Consortium Target OR342
To be Published
4N3P
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BU of 4n3p by Molmil
Crystal Structure of De Novo designed Serine Hydrolase OSH18, Northeast Structural Genomics Consortium (NESG) Target OR396
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, SODIUM ION, ...
著者Kuzin, A, Lew, S, Rajagopalan, S, Seetharaman, J, Mao, L, Xiao, R, Kogan, S, Maglaqui, M, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2013-10-07
公開日2013-11-13
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Crystal Structure of De Novo designed Serine Hydrolase OSH18, Northeast Structural Genomics Consortium (NESG) Target OR396
To be Published
1TS8
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BU of 1ts8 by Molmil
Structure of the pR cis planar intermediate from time-resolved Laue crystallography
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
登録日2004-06-21
公開日2005-07-05
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1TS6
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BU of 1ts6 by Molmil
Structure of the pB2 intermediate from time-resolved Laue crystallography
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
登録日2004-06-21
公開日2005-07-05
最終更新日2021-07-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1TS7
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BU of 1ts7 by Molmil
Structure of the pR cis wobble and pR E46Q intermediates from time-resolved Laue crystallography
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
登録日2004-06-21
公開日2005-07-05
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005

 

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