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PDB: 40926 件

6F3S
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The crystal structure of Glycogen Phosphorylase in complex with 10d
分子名称: (2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-[5-(4-phenylphenyl)-4~{H}-1,2,4-triazol-3-yl]oxane-3,4,5-triol, Glycogen phosphorylase, muscle form, ...
著者Kyriakis, E, Stamati, E.C.V, Stravodimos, G.A, Skamnaki, V.T, Leonidas, D.D.
登録日2017-11-28
公開日2018-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A multidisciplinary study of 3-( beta-d-glucopyranosyl)-5-substituted-1,2,4-triazole derivatives as glycogen phosphorylase inhibitors: Computation, synthesis, crystallography and kinetics reveal new potent inhibitors.
Eur J Med Chem, 147, 2018
6F5F
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Structure of ARTD2/PARP2 WGR domain bound to double strand DNA with 5 nucleotide overhang and 5'phosphate
分子名称: DNA (5'-D(P*CP*GP*GP*TP*CP*GP*CP*CP*TP*AP*TP*AP*GP*GP*C)-3'), Poly [ADP-ribose] polymerase 2
著者Obaji, E, Haikarainen, T, Lehtio, L.
登録日2017-12-01
公開日2018-10-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Structural basis for DNA break recognition by ARTD2/PARP2.
Nucleic Acids Res., 46, 2018
6MOA
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C-terminal bromodomain of human BRD2 in complex with 4-(2-cyclopropyl-7-(6-methylquinolin-5-yl)-1H-benzo[d]imidazol-5-yl)-3,5-dimethylisoxazole inhibitor
分子名称: 4-(2-cyclopropyl-7-(6-methylquinolin-5-yl)-1H-benzo[d]imidazol-5-yl)-3,5-dimethylisoxazole, Bromodomain-containing protein 2, GLYCEROL
著者Lansdon, E.B, Newby, Z.E.R.
登録日2018-10-04
公開日2019-01-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.271 Å)
主引用文献Structure-guided discovery of a novel, potent, and orally bioavailable 3,5-dimethylisoxazole aryl-benzimidazole BET bromodomain inhibitor.
Bioorg. Med. Chem., 27, 2019
7TA2
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BU of 7ta2 by Molmil
Crystal structure of the human sperm-expressed surface protein SPACA6
分子名称: BROMIDE ION, Sperm acrosome membrane-associated protein 6
著者Vance, T.D.R, Yip, P, Jimenez, E, Uson, I, Lee, J.E.
登録日2021-12-20
公開日2022-08-31
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献SPACA6 ectodomain structure reveals a conserved superfamily of gamete fusion-associated proteins.
Commun Biol, 5, 2022
6EXN
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Post-catalytic P complex spliceosome with 3' splice site docked
分子名称: GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, Intron lariat: UBC4 RNA, ...
著者Wilkinson, M.E, Fica, S.M, Galej, W.P, Norman, C.M, Newman, A.J, Nagai, K.
登録日2017-11-08
公開日2018-01-17
最終更新日2020-10-07
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Postcatalytic spliceosome structure reveals mechanism of 3'-splice site selection.
Science, 358, 2017
6V3D
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Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit
分子名称: 23s ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
著者Morgan, C.E, Yu, E.W.
登録日2019-11-25
公開日2020-02-05
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development.
Mbio, 11, 2020
6V6K
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EGFR(T790M/V948R) in complex with LN2057
分子名称: CHLORIDE ION, Epidermal growth factor receptor, N-[3-({4-[4-(4-fluorophenyl)-2-(methylsulfanyl)-1H-imidazol-5-yl]pyridin-2-yl}amino)-4-methoxyphenyl]propanamide
著者Heppner, D.E, Eck, M.J.
登録日2019-12-05
公開日2020-04-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Basis for EGFR Mutant Inhibition by Trisubstituted Imidazole Inhibitors.
J.Med.Chem., 63, 2020
7NWT
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Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Hill, C.H, Napthine, S, Pekarek, L, Kibe, A, Firth, A.E, Graham, S.C, Caliskan, N, Brierley, I.
登録日2021-03-17
公開日2021-12-15
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.66 Å)
主引用文献Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch
Nat Commun, 12, 2021
6P1L
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Crystal structure of EGFR in complex with EAI045
分子名称: (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-(1-oxo-1,3-dihydro-2H-isoindol-2-yl)-N-(1,3-thiazol-2-yl)acetamide, Epidermal growth factor receptor, MAGNESIUM ION, ...
著者Heppner, D.E, Eck, M.J.
登録日2019-05-20
公開日2019-12-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Discovery and Optimization of Dibenzodiazepinones as Allosteric Mutant-Selective EGFR Inhibitors.
Acs Med.Chem.Lett., 10, 2019
7B1X
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Crystal structure of cold-active esterase PMGL3 from permafrost metagenomic library
分子名称: esterase PMGL3
著者Boyko, K.M, Nikolaeva, A.Y, Petrovskaya, L.E, Kryukova, M.V, Kryukova, E.A, Korzhenevsky, D.A, Lomakina, G.Y, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O.
登録日2020-11-25
公開日2021-11-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural and Biochemical Characterization of a Cold-Active PMGL3 Esterase with Unusual Oligomeric Structure.
Biomolecules, 11, 2021
6PK5
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Adenylate kinase from Methanococcus igneus - apo form
分子名称: Adenylate kinase, CHLORIDE ION
著者Moon, S, Kim, J, Bae, E, Phillips Jr, G.N.
登録日2019-06-28
公開日2020-07-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Adenylate kinase from Methanococcus igneus - apo form
To Be Published
8FCN
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Cryo-EM structure of p97:UBXD1 VIM-only state
分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 6
著者Braxton, J.R, Tucker, M.R, Tse, E, Southworth, D.R.
登録日2022-12-01
公開日2023-06-21
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions.
Nat.Struct.Mol.Biol., 30, 2023
4Y6Z
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Yeast 20S proteasome in complex with Ac-PAL-ep
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-PAL-ep, CHLORIDE ION, ...
著者Groll, M, Huber, E.M.
登録日2015-02-13
公開日2015-06-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
4YA2
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Yeast 20S proteasome beta2-H116N mutant in complex with Ac-LAE-ep
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-LAE-ep, CHLORIDE ION, ...
著者Huber, E.M, Groll, M.
登録日2015-02-17
公開日2015-06-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
7ZR9
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OMI-2 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Omi-2 Fab heavy chain, ...
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
登録日2022-05-03
公開日2022-06-01
最終更新日2022-06-22
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Potent cross-reactive antibodies following Omicron breakthrough in vaccinees.
Cell, 185, 2022
7ZR7
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BU of 7zr7 by Molmil
OMI-42 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Omi-42 heavy chain, ...
著者Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
登録日2022-05-03
公開日2022-06-01
最終更新日2023-11-22
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Potent cross-reactive antibodies following Omicron breakthrough in vaccinees.
Cell, 185, 2022
7Q69
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Crystal structure of Chaetomium thermophilum C30S Ahp1 in the pre-reaction state
分子名称: GLYCEROL, SULFATE ION, Thioredoxin domain-containing protein
著者Ravichandran, K.E, Wilk, P, Grudnik, P, Glatt, S.
登録日2021-11-05
公開日2022-08-24
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation.
Embo J., 41, 2022
7Q6A
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BU of 7q6a by Molmil
Crystal structure of Chaetomium thermophilum C30S Ahp1 in post-reaction state
分子名称: GLYCEROL, SULFATE ION, Thioredoxin domain-containing protein
著者Ravichandran, K.E, Wilk, P, Grudnik, P, Glatt, S.
登録日2021-11-05
公開日2022-08-24
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation.
Embo J., 41, 2022
6YE9
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Small-molecule inhibitor of 14-3-3 protein-protein interactions
分子名称: 14-3-3 protein sigma, MAGNESIUM ION, [2-[2-oxidanylidene-2-[(phenylmethyl)amino]ethoxy]phenyl]phosphonic acid
著者Ottmann, C, Visser, E.J.
登録日2020-03-24
公開日2021-03-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure-based conversion of a promiscuous inhibitor to a selective stabilizer of protein-protein interactions
To Be Published
7Q68
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Crystal structure of Chaetomium thermophilum wild-type Ahp1
分子名称: GLYCEROL, SULFATE ION, Thioredoxin domain-containing protein
著者Ravichandran, K.E, Wilk, P, Grudnik, P, Glatt, S.
登録日2021-11-05
公開日2022-08-31
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation.
Embo J., 41, 2022
5M8D
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BU of 5m8d by Molmil
Tubulin MTD265-R1 complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5-(6-morpholin-4-yl-2-pyrrolidin-1-yl-pyrimidin-4-yl)-4-(trifluoromethyl)pyridin-2-amine, CALCIUM ION, ...
著者Bohnacker, T, Prota, A.E, Steinmetz, M.O, Wymann, M.P.
登録日2016-10-28
公開日2017-03-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Deconvolution of Buparlisib's mechanism of action defines specific PI3K and tubulin inhibitors for therapeutic intervention.
Nat Commun, 8, 2017
6MW4
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Structure of pseudoprotease CspC from Clostridioides difficile
分子名称: Putative germination-specific protease, SULFATE ION
著者Eckenroth, B.E, Doublie, S.
登録日2018-10-29
公開日2019-06-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献The CspC pseudoprotease regulates germination of Clostridioides difficile spores in response to multiple environmental signals.
Plos Genet., 15, 2019
5MAG
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Crystal structure of MELK in complex with an inhibitor
分子名称: DIMETHYL SULFOXIDE, GLYCEROL, Maternal embryonic leucine zipper kinase, ...
著者Canevari, G, Re Depaolini, S, Casale, E, Felder, E, Kuster, B, Heinzlmeir, S.
登録日2016-11-03
公開日2017-12-06
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The target landscape of clinical kinase drugs.
Science, 358, 2017
7QYR
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Crystal structure of RimK from Pseudomonas aeruginosa PAO1
分子名称: ADENOSINE-5'-DIPHOSPHATE, Probable alpha-L-glutamate ligase, poly-glutamate
著者Thompson, C.M.A, Little, R.H, Stevenson, C.E.M, Lawson, D.M, Malone, J.G.
登録日2022-01-29
公開日2022-10-05
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural insights into the mechanism of adaptive ribosomal modification by Pseudomonas RimK.
Proteins, 91, 2023
7QYS
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Crystal structure of RimK from Pseudomonas syringae DC3000
分子名称: ADENOSINE-5'-DIPHOSPHATE, Probable alpha-L-glutamate ligase
著者Thompson, C.M.A, Little, R.H, Stevenson, C.E.M, Lawson, D.M, Malone, J.G.
登録日2022-01-29
公開日2022-10-05
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural insights into the mechanism of adaptive ribosomal modification by Pseudomonas RimK.
Proteins, 91, 2023

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件を2024-09-04に公開中

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