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PDB: 40926 results

3L8E
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Crystal Structure of apo form of D,D-heptose 1.7-bisphosphate phosphatase from E. Coli
Descriptor: ACETIC ACID, D,D-heptose 1,7-bisphosphate phosphatase, ZINC ION
Authors:Nguyen, H, Peisach, E, Allen, K.N.
Deposit date:2009-12-31
Release date:2010-02-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural Determinants of Substrate Recognition in the HAD Superfamily Member d-glycero-d-manno-Heptose-1,7-bisphosphate Phosphatase (GmhB) .
Biochemistry, 49, 2010
3L94
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BU of 3l94 by Molmil
Structure of PvdQ covalently acylated with myristate
Descriptor: 1,2-ETHANEDIOL, Acyl-homoserine lactone acylase pvdQ subunit alpha, Acyl-homoserine lactone acylase pvdQ subunit beta, ...
Authors:Drake, E.J, Gulick, A.M.
Deposit date:2010-01-04
Release date:2011-01-26
Last modified:2013-04-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization and high-throughput screening of inhibitors of PvdQ, an NTN hydrolase involved in pyoverdine synthesis.
Acs Chem.Biol., 6, 2011
7RYE
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BU of 7rye by Molmil
Cryo-EM structure of the needle filament-tip complex of the Salmonella type III secretion injectisome
Descriptor: Cell invasion protein SipD, Protein PrgI
Authors:Guo, E.Z, Galan, J.E.
Deposit date:2021-08-25
Release date:2021-11-10
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structure of the needle filament tip complex of the Salmonella type III secretion injectisome.
Proc.Natl.Acad.Sci.USA, 118, 2021
6E1O
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BU of 6e1o by Molmil
afTMEM16 reconstituted in nanodiscs in the presence of Ca2+ and ceramide 24:0
Descriptor: CALCIUM ION, DECANE, DODECANE, ...
Authors:Falzone, M.E, Accardi, A.
Deposit date:2018-07-10
Release date:2019-02-06
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Structural basis of Ca2+-dependent activation and lipid transport by a TMEM16 scramblase.
Elife, 8, 2019
6DZV
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BU of 6dzv by Molmil
Wild type human serotonin transporter in complex with 15B8 Fab bound to ibogaine in occluded conformation
Descriptor: (5beta)-12-methoxyibogamine, 15B8 antibody heavy chain, 15B8 antibody light chain, ...
Authors:Coleman, J.A, Yang, D, Gouaux, E.
Deposit date:2018-07-05
Release date:2019-04-24
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transport.
Nature, 569, 2019
6E0H
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BU of 6e0h by Molmil
PDB: afTMEM16 reconstituted in nanodiscs in the presence of Ca2+
Descriptor: CALCIUM ION, Plasma membrane channel protein (Aqy1), putative
Authors:Falzone, M.E, Accardi, A.
Deposit date:2018-07-06
Release date:2019-02-06
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Structural basis of Ca2+-dependent activation and lipid transport by a TMEM16 scramblase.
Elife, 8, 2019
6DZZ
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BU of 6dzz by Molmil
Cryo-EM Structure of the wild-type human serotonin transporter in complex with ibogaine and 15B8 Fab in the inward conformation
Descriptor: (5beta)-12-methoxyibogamine, 15B8 antibody heavy chain, 15B8 antibody light chain, ...
Authors:Yang, D, Coleman, J.A, Gouaux, E.
Deposit date:2018-07-05
Release date:2019-04-24
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transport.
Nature, 569, 2019
4O03
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BU of 4o03 by Molmil
Crystal structure of Ca2+ bound prothrombin deletion mutant residues 146-167
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Prothrombin
Authors:Pozzi, N, Chen, Z, Shropshire, D.B, Pelc, L.A, Di Cera, E.
Deposit date:2013-12-13
Release date:2014-05-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.38 Å)
Cite:The linker connecting the two kringles plays a key role in prothrombin activation.
Proc.Natl.Acad.Sci.USA, 111, 2014
3U24
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BU of 3u24 by Molmil
The structure of a putative lipoprotein of unknown function from Shewanella oneidensis.
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, CALCIUM ION, ...
Authors:Cuff, M.E, Hatzos-Skintges, C, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-09-30
Release date:2012-05-09
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The structure of a putative lipoprotein of unknown function from Shewanella oneidensis.
TO BE PUBLISHED
4NX6
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BU of 4nx6 by Molmil
single room temperature model of DHFR
Descriptor: BETA-MERCAPTOETHANOL, Dihydrofolate reductase, FOLIC ACID, ...
Authors:Fenwick, R.B, van den Bedem, H, Fraser, J.S, Wright, P.E.
Deposit date:2013-12-08
Release date:2014-01-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR.
Proc.Natl.Acad.Sci.USA, 111, 2014
5W3Z
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BU of 5w3z by Molmil
Crystal structure of SsoPox AsC6 mutant (L72I-Y99F-I122L-L228M-F229S-W263L)
Descriptor: 1,2-ETHANEDIOL, Aryldialkylphosphatase, COBALT (II) ION, ...
Authors:Hiblot, J, Gotthard, G, Jacquet, P, Daude, D, Bergonzi, C, Chabriere, E, Elias, M.
Deposit date:2017-06-08
Release date:2018-01-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase.
Sci Rep, 7, 2017
4UQO
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BU of 4uqo by Molmil
RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA REPAIR AND RECOMBINATION PROTEIN RADA, MAGNESIUM ION, ...
Authors:Marsh, M.E, Ehebauer, M.T, Scott, D, Abell, C, Blundell, T.L, Hyvonen, M.
Deposit date:2014-06-24
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:ATP Half-Sites in Rada and Rad51 Recombinases Bind Nucleotides
FEBS Open Bio, 6, 2016
4UZI
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BU of 4uzi by Molmil
Crystal Structure of AauDyP Complexed with Imidazole
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Strittmatter, E, Liers, C, Ullrich, R, Hofrichter, M, Piontek, K, Plattner, D.A.
Deposit date:2014-09-05
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Toolbox of Auricularia Auricula-Judae Dye-Decolorizing Peroxidase - Identification of Three New Potential Substrate-Interaction Sites.
Arch.Biochem.Biophys., 574, 2015
1VJK
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BU of 1vjk by Molmil
Putative molybdopterin converting factor, subunit 1 from Pyrococcus furiosus, Pfu-562899-001
Descriptor: molybdopterin converting factor, subunit 1
Authors:Chen, L, Liu, Z.J, Tempel, W, Shah, A, Lee, D, Rose, J.P, Eneh, J.C, Hopkins, R.C, Jenney Jr, F.E, Lee, H.S, Li, T, Poole II, F.L, Shah, C, Sugar, F.J, Adams, M.W.W, Richardson, D.C, Richardson, J.S, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-03-10
Release date:2004-08-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Putative molybdopterin converting factor, subunit 1 from Pyrococcus furiosus, Pfu-562899-001 '
To be published
5VQI
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BU of 5vqi by Molmil
Nuclear transport of the Neurospora crassa NIT2 transcription factor is mediated by Importin-alpha
Descriptor: Importin subunit alpha, Nuclear localization sequence of NIT2 transcription factor (NIT2-NLS)
Authors:Bernardes, N.E, Fontes, M.R.M.
Deposit date:2017-05-09
Release date:2017-11-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Nuclear transport of the Neurospora crassa NIT-2 transcription factor is mediated by importin-alpha.
Biochem. J., 474, 2017
5VJT
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BU of 5vjt by Molmil
De Novo Photosynthetic Reaction Center Protein Equipped with Heme B and Zn(II) cations
Descriptor: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, Reaction Center Maquette, ...
Authors:Ennist, N.M, Stayrook, S.E, Dutton, P.L, Moser, C.C.
Deposit date:2017-04-19
Release date:2018-04-25
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:De novo protein design of photochemical reaction centers.
Nat Commun, 13, 2022
3TQC
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BU of 3tqc by Molmil
Structure of the pantothenate kinase (coaA) from Coxiella burnetii
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Pantothenate kinase
Authors:Franklin, M.C, Cheung, J, Rudolph, M, Cassidy, M, Gary, E, Burshteyn, F, Love, J.
Deposit date:2011-09-09
Release date:2011-09-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural genomics for drug design against the pathogen Coxiella burnetii.
Proteins, 83, 2015
3UBM
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BU of 3ubm by Molmil
Formyl-CoA:oxalate CoA-transferase from Acetobacter aceti
Descriptor: COENZYME A, Formyl-CoA:oxalate CoA-transferase
Authors:Starks, C.M, Mullins, E.A, Kappock, T.J.
Deposit date:2011-10-24
Release date:2012-03-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.992 Å)
Cite:Formyl-coenzyme A (CoA): Oxalate CoA-transferase from the acidophile Acetobacter aceti has a distinctive electrostatic surface and inherent acid stability.
Protein Sci., 21, 2012
3TSA
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BU of 3tsa by Molmil
Spinosyn Rhamnosyltransferase SpnG
Descriptor: MAGNESIUM ION, NDP-rhamnosyltransferase, alpha-D-glucopyranose
Authors:Isiorho, E.A, Liu, H.-W, Keatinge-Clay, A.T.
Deposit date:2011-09-12
Release date:2012-02-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Studies of the Spinosyn Rhamnosyltransferase, SpnG.
Biochemistry, 51, 2012
4W9S
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BU of 4w9s by Molmil
2-(4-(1H-tetrazol-5-yl)phenyl)-5-hydroxypyrimidin-4(3H)-one bound to influenza 2009 H1N1 endonuclease
Descriptor: 5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one, MANGANESE (II) ION, Polymerase acidic protein, ...
Authors:Bauman, J.D, Patel, D, Das, K, Arnold, E.
Deposit date:2014-08-27
Release date:2014-10-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Phenyl Substituted 4-Hydroxypyridazin-3(2H)-ones and 5-Hydroxypyrimidin-4(3H)-ones: Inhibitors of Influenza A Endonuclease.
J.Med.Chem., 57, 2014
3TV8
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BU of 3tv8 by Molmil
Pharmacological Chaperoning in Human alpha-Galactosidase
Descriptor: (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol, 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-galactosidase A, ...
Authors:Rogich, J.J, Guce, A.I, Clark, N.E, Garman, S.C.
Deposit date:2011-09-19
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.639 Å)
Cite:The molecular basis of pharmacological chaperoning in human alpha-galactosidase
Chem.Biol., 18, 2011
5VOC
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BU of 5voc by Molmil
Crystal structure of HCMV Pentamer in complex with neutralizing antibody 8I21 - Low resolution dataset for initial phasing by SAD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein H, Envelope glycoprotein L, ...
Authors:Malito, E, Chandramouli, S.
Deposit date:2017-05-02
Release date:2017-07-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.99 Å)
Cite:Structural basis for potent antibody-mediated neutralization of human cytomegalovirus.
Sci Immunol, 2, 2017
3TZT
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BU of 3tzt by Molmil
The structure of a protein in glycosyl transferase family 8 from Anaerococcus prevotii.
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Glycosyl transferase family 8
Authors:Cuff, M.E, Tesar, C, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-09-27
Release date:2011-12-07
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of a protein in glycosyl transferase family 8 from Anaerococcus prevotii.
TO BE PUBLISHED
5W3W
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BU of 5w3w by Molmil
Crystal structure of SsoPox AsD6 mutant (V27A-Y97W-L228M-W263M) - open form
Descriptor: 1,2-ETHANEDIOL, Aryldialkylphosphatase, COBALT (II) ION, ...
Authors:Hiblot, J, Gotthard, G, Jacquet, P, Daude, D, Bergonzi, C, Chabriere, E, Elias, M.
Deposit date:2017-06-08
Release date:2018-01-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase.
Sci Rep, 7, 2017
5W50
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BU of 5w50 by Molmil
Crystal structure of the segment, LIIKGI, from the RRM2 of TDP-43, residues 248-253
Descriptor: TAR DNA-binding protein 43
Authors:Guenther, E.L, Trinh, H, Sawaya, M.R, Eisenberg, D.S.
Deposit date:2017-06-13
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.
Nat. Struct. Mol. Biol., 25, 2018

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