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PDB: 105 results

1SDN
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BU of 1sdn by Molmil
CRYSTAL STRUCTURE OF A DEACYLATION-DEFECTIVE MUTANT OF PENICILLIN-BINDING PROTEIN 5 MODIFIED BY MERCURY
Descriptor: MERCURY (II) ION, Penicillin-binding protein 5
Authors:Nicola, G, Nicholas, R.A, Davies, C.
Deposit date:2004-02-13
Release date:2005-02-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A large displacement of the SXN motif of Cys115-modified penicillin-binding protein 5 from Escherichia coli.
Biochem.J., 392, 2005
6VBC
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BU of 6vbc by Molmil
Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041
Descriptor: Probable peptidoglycan D,D-transpeptidase PenA
Authors:Singh, A, Davies, C.
Deposit date:2019-12-18
Release date:2020-04-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Mutations in Neisseria gonorrhoeae penicillin-binding protein 2 associated with extended-spectrum cephalosporin resistance create an energetic barrier against acylation via restriction of protein dynamics
J.Biol.Chem., 2020
6VBL
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Crystal structure of the transpeptidase domain of PBP2 from the Neisseria gonorrhoeae cephalosporin decreased susceptibility strain 35/02
Descriptor: Probable peptidoglycan D,D-transpeptidase PenA
Authors:Singh, A, Davies, C.
Deposit date:2019-12-19
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Mutations in Neisseria gonorrhoeae penicillin-binding protein 2 associated with extended-spectrum cephalosporin resistance create an energetic barrier against acylation via restriction of protein dynamics
J.Biol.Chem., 2020
6C4R
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BU of 6c4r by Molmil
Staphylopine dehydrogenase (SaODH) - Apo
Descriptor: GLYCEROL, SULFATE ION, Staphylopine dehydrogenase
Authors:McFarlane, J.S, Davis, C.L, Lamb, A.L.
Deposit date:2018-01-12
Release date:2018-04-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.288 Å)
Cite:Staphylopine, pseudopaline, and yersinopine dehydrogenases: A structural and kinetic analysis of a new functional class of opine dehydrogenase.
J. Biol. Chem., 293, 2018
6C4T
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BU of 6c4t by Molmil
Staphylopine dehydrogenase (SaODH) - NADP+ bound
Descriptor: GLYCEROL, Staphylopine dehydrogenase, [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
Authors:McFarlane, J.S, Davis, C.L, Lamb, A.L.
Deposit date:2018-01-12
Release date:2018-04-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Staphylopine, pseudopaline, and yersinopine dehydrogenases: A structural and kinetic analysis of a new functional class of opine dehydrogenase.
J. Biol. Chem., 293, 2018
6C4L
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BU of 6c4l by Molmil
Yersinopine dehydrogenase (YpODH) - Apo
Descriptor: Yersinopine dehydrogenase
Authors:McFarlane, J.S, Davis, C.L, Lamb, A.L.
Deposit date:2018-01-12
Release date:2018-04-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Staphylopine, pseudopaline, and yersinopine dehydrogenases: A structural and kinetic analysis of a new functional class of opine dehydrogenase.
J. Biol. Chem., 293, 2018
1HE8
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Ras G12V - PI 3-kinase gamma complex
Descriptor: MAGNESIUM ION, PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT, GAMMA ISOFORM, ...
Authors:Pacold, M.E, Suire, S, Perisic, O, Lara-Gonzalez, S, Davis, C.T, Hawkins, P.T, Walker, E.H, Stephens, L, Eccleston, J.F, Williams, R.L.
Deposit date:2000-11-20
Release date:2001-01-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure and Functional Analysis of Ras Binding to its Effector Phosphoinositide 3-Kinase Gamma
Cell(Cambridge,Mass.), 103, 2000
1NJ4
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Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 1.9 A resolution
Descriptor: Penicillin-binding protein 5
Authors:Nicola, G, Nicholas, R.A, Davies, C.
Deposit date:2002-12-30
Release date:2003-01-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of wild-type penicillin-binding protein 5 from Escherichia coli: implications for deacylation of the acyl-enzyme complex.
J.Biol.Chem., 278, 2003
1NZO
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The crystal structure of wild type penicillin-binding protein 5 from E. coli
Descriptor: BETA-MERCAPTOETHANOL, Penicillin-binding protein 5
Authors:Nicholas, R.A, Krings, S, Tomberg, J, Nicola, G, Davies, C.
Deposit date:2003-02-19
Release date:2004-01-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of wild-type penicillin-binding protein 5 from Escherichia coli: implications for deacylation of the acyl-enzyme complex.
J.Biol.Chem., 278, 2003
3MZD
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BU of 3mzd by Molmil
Structure of penicillin-binding protein 5 from E. coli: cloxacillin acyl-enzyme complex
Descriptor: (2R,4S)-2-[(1S)-1-({[3-(2-chlorophenyl)-5-methyl-1,2-oxazol-4-yl]carbonyl}amino)-2-oxoethyl]-5,5-dimethyl-1,3-thiazolid ine-4-carboxylic acid, D-alanyl-D-alanine carboxypeptidase dacA, GLYCEROL
Authors:Nicola, G, Tomberg, J, Pratt, R.F, Nicholas, R.A, Davies, C.
Deposit date:2010-05-12
Release date:2011-03-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of covalent complexes of beta-lactam antibiotics with Escherichia coli penicillin-binding protein 5: toward an understanding of antibiotic specificity
Biochemistry, 49, 2010
3MZE
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Structure of penicillin-binding protein 5 from E.coli: cefoxitin acyl-enzyme complex
Descriptor: (2R)-5-[(carbamoyloxy)methyl]-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, D-alanyl-D-alanine carboxypeptidase dacA, GLYCEROL
Authors:Nicola, G, Tomberg, J, Pratt, R.F, Nicholas, R.A, Davies, C.
Deposit date:2010-05-12
Release date:2011-03-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of covalent complexes of beta-lactam antibiotics with Escherichia coli penicillin-binding protein 5: toward an understanding of antibiotic specificity
Biochemistry, 49, 2010
1DIV
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BU of 1div by Molmil
RIBOSOMAL PROTEIN L9
Descriptor: RIBOSOMAL PROTEIN L9
Authors:Hoffman, D.W, Cameron, C, Davies, C, Gerchman, S.E, Kycia, J.H, Porter, S, Ramakrishnan, V, White, S.W.
Deposit date:1996-07-02
Release date:1997-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of prokaryotic ribosomal protein L9: a bi-lobed RNA-binding protein.
EMBO J., 13, 1994
6P54
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Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae acylated by ceftriaxone
Descriptor: CEFOTAXIME, C3' cleaved, open, ...
Authors:Singh, A, Davies, C.
Deposit date:2019-05-29
Release date:2019-08-07
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Recognition of the beta-lactam carboxylate triggers acylation ofNeisseria gonorrhoeaepenicillin-binding protein 2.
J.Biol.Chem., 294, 2019
6P55
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Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae acylated by cefixime
Descriptor: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, cefixime, ...
Authors:Singh, A, Davies, C.
Deposit date:2019-05-29
Release date:2019-08-07
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Recognition of the beta-lactam carboxylate triggers acylation ofNeisseria gonorrhoeaepenicillin-binding protein 2.
J.Biol.Chem., 294, 2019
6P56
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BU of 6p56 by Molmil
Crystal structure of the transpeptidase domain of a T498A mutant of PBP2 from Neisseria gonorrhoeae
Descriptor: PHOSPHATE ION, peptidoglycan D,D-transpeptidase PenA
Authors:Singh, A, Davies, C.
Deposit date:2019-05-29
Release date:2019-08-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Recognition of the beta-lactam carboxylate triggers acylation ofNeisseria gonorrhoeaepenicillin-binding protein 2.
J.Biol.Chem., 294, 2019
6P52
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Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae with a bound phosphate at the active site
Descriptor: PHOSPHATE ION, peptidoglycan D,D-transpeptidase PenA
Authors:Singh, A, Davies, C.
Deposit date:2019-05-29
Release date:2019-08-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Recognition of the beta-lactam carboxylate triggers acylation ofNeisseria gonorrhoeaepenicillin-binding protein 2.
J.Biol.Chem., 294, 2019
3UN7
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BU of 3un7 by Molmil
Crystal structure of PBPA from MYCOBACTERIUM TUBERCULOSIS
Descriptor: Penicillin-binding protein A
Authors:Fedarovich, A, Davies, C.
Deposit date:2011-11-15
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The role of the beta5-alpha11 loop in the active-site dynamics of acylated penicillin-binding protein A from Mycobacterium tuberculosis
J.Mol.Biol., 418, 2012
6P53
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BU of 6p53 by Molmil
Crystal structure of the transpeptidase domain of PBP2 from Neisseria gonorrhoeae in apo form
Descriptor: PHOSPHATE ION, peptidoglycan D,D-transpeptidase PenA
Authors:Singh, A, Davies, C.
Deposit date:2019-05-29
Release date:2019-08-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Recognition of the beta-lactam carboxylate triggers acylation ofNeisseria gonorrhoeaepenicillin-binding protein 2.
J.Biol.Chem., 294, 2019
5HM6
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BU of 5hm6 by Molmil
N-terminal domain of BfmR from Acinetobacter baumannii
Descriptor: BfmR
Authors:Roth, B.R, Davies, C.
Deposit date:2016-01-15
Release date:2017-01-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Structure of the Biofilm-controlling Response Regulator BfmR from Acinetobacter baumannii Reveals Details of Its DNA-binding Mechanism.
J. Mol. Biol., 2018
3LO7
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BU of 3lo7 by Molmil
Crystal structure of PBPA from Mycobacterium tuberculosis
Descriptor: Penicillin-binding protein A
Authors:Fedarovich, A, Davies, C.
Deposit date:2010-02-03
Release date:2010-03-23
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Unusual conformation of the SxN motif in the crystal structure of penicillin-binding protein A from Mycobacterium tuberculosis.
J.Mol.Biol., 398, 2010
1TZC
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BU of 1tzc by Molmil
Crystal structure of phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum in complex with 5-phosphoarabinonate
Descriptor: 5-PHOSPHOARABINONIC ACID, GLYCEROL, SULFATE ION, ...
Authors:Swan, M.K, Hansen, T, Schoenheit, P, Davies, C.
Deposit date:2004-07-09
Release date:2004-07-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A novel phosphoglucose/phosphomannose isomease from the crenarchaeon Pyrobaculum aerophilum is a member of the PGI superfamily: structural evidence at 1.16 A resolution
J.Biol.Chem., 279, 2004
1NZU
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BU of 1nzu by Molmil
Wild-type penicillin-binding protein 5 from E. coli modified by beta-mercaptoethanol
Descriptor: BETA-MERCAPTOETHANOL, Penicillin-binding protein 5
Authors:Nicola, G, Nicholas, R.A, Davies, C.
Deposit date:2003-02-19
Release date:2004-03-02
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:A large displacement of the SXN motif of Cys115-modified penicillin-binding protein 5 from Escherichia coli.
Biochem.J., 392, 2005
1TZB
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BU of 1tzb by Molmil
Crystal structure of native phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum
Descriptor: GLYCEROL, SULFATE ION, glucose-6-phosphate isomerase, ...
Authors:Swan, M.K, Hansen, T, Schoenheit, P, Davies, C.
Deposit date:2004-07-09
Release date:2004-07-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:A novel phosphoglucose/phosphomannose isomease from the crenarchaeon Pyrobaculum aerophilum is a member of the PGI superfamily: structural evidence at 1.16 A resolution
J.Biol.Chem., 279, 2004
1QX4
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BU of 1qx4 by Molmil
Structrue of S127P mutant of cytochrome b5 reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase
Authors:Bewley, M.C, Davis, C.A, Marohnic, C.C, Taormina, D, Barber, M.J.
Deposit date:2003-09-04
Release date:2004-09-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of the S127P mutant of cytochrome b5 reductase that causes methemoglobinemia shows the AMP moiety of the flavin occupying the substrate binding site
Biochemistry, 42, 2003
1S3I
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BU of 1s3i by Molmil
Crystal structure of the N terminal hydrolase domain of 10-formyltetrahydrofolate dehydrogenase
Descriptor: 10-formyltetrahydrofolate dehydrogenase, BETA-MERCAPTOETHANOL
Authors:Chumanevich, A.A, Krupenko, S.A, Davies, C.
Deposit date:2004-01-13
Release date:2004-01-27
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of the hydrolase domain of 10-formyltetrahydrofolate dehydrogenase: mechanism of hydrolysis and its interplay with the dehydrogenase domain.
J.Biol.Chem., 279, 2004

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