Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 85 件

8EFX
DownloadVisualize
BU of 8efx by Molmil
Structure of OtDUB DUB Domain disulfide crosslinked with Ubiquitin
分子名称: OtDUB, Ubiquitin
著者Negron Teron, K.N, Das, C.
登録日2022-09-09
公開日2023-09-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Cocrystallization of ubiquitin-deubiquitinase complexes through disulfide linkage.
Acta Crystallogr D Struct Biol, 79, 2023
8EDE
DownloadVisualize
BU of 8ede by Molmil
Crystal structure of covalent inhibitor 2-chloro-N'-(N-(4-chlorophenyl)-N-methylglycyl)acetohydrazide bound to Ubiquitin C-terminal Hydrolase-L1
分子名称: 2-[(4-chlorophenyl)-methyl-amino]-~{N}'-ethanoyl-ethanehydrazide, SULFATE ION, Ubiquitin carboxyl-terminal hydrolase isozyme L1
著者Patel, R, Imhoff, R, Flaherty, D, Das, C.
登録日2022-09-04
公開日2023-09-20
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (1.799 Å)
主引用文献Covalent Fragment Screening and Optimization Identifies the Chloroacetohydrazide Scaffold as Inhibitors for Ubiquitin C-terminal Hydrolase L1.
J.Med.Chem., 67, 2024
8DY8
DownloadVisualize
BU of 8dy8 by Molmil
Crystal structure of the R178Q mutant of ubiquitin carboxy terminal hydrolase L1 (UCH-L1)
分子名称: MAGNESIUM ION, SULFATE ION, Ubiquitin carboxyl-terminal hydrolase isozyme L1
著者Kenny, S, Brown, K.J, Das, C.
登録日2022-08-03
公開日2023-08-09
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Enhanced catalytic activity of the UCHL1R178Q mutant is due to a more reactive active site
To Be Published
8FEK
DownloadVisualize
BU of 8fek by Molmil
Crystal structure of PBP cyclase Ulm16
分子名称: PBP cyclase Ulm16
著者Patel, R, Budimir, Z, Parkinson, E, Das, C.
登録日2022-12-06
公開日2023-11-08
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.058 Å)
主引用文献Biocatalytic cyclization of small macrolactams by a penicillin-binding protein-type thioesterase.
Nat.Chem.Biol., 20, 2024
6OAM
DownloadVisualize
BU of 6oam by Molmil
Crystal Structure of ChlaDUB2 DUB domain
分子名称: Deubiquitinase and deneddylase Dub2, Ubiquitin
著者Hausman, J.M, Das, C.
登録日2019-03-17
公開日2020-04-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.503 Å)
主引用文献The Two Deubiquitinating Enzymes fromChlamydia trachomatisHave Distinct Ubiquitin Recognition Properties.
Biochemistry, 59, 2020
6OV1
DownloadVisualize
BU of 6ov1 by Molmil
Structure of Staphylococcus aureus RNase P protein mutant with defective mRNA degradation activity
分子名称: Ribonuclease P protein component
著者Ha, L, Colquhoun, J, Noinaj, N, Das, C, Dunman, P, Flaherty, D.P.
登録日2019-05-06
公開日2020-12-02
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Genetic and biochemical characterization of Staphylococcus aureus RnpA
To Be Published
6P5H
DownloadVisualize
BU of 6p5h by Molmil
Structure of MavC middle insertion domain
分子名称: MavC
著者Negron Teron, K.I, Puvar, K, Iyer, S, Das, C.
登録日2019-05-30
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
6P5B
DownloadVisualize
BU of 6p5b by Molmil
Crystal Structure of MavC in Complex with Ub-UbE2N
分子名称: MavC, Ubiquitin, Ubiquitin-conjugating enzyme E2 N
著者Puvar, K, Iyer, S, Negron Teron, K.I, Das, C.
登録日2019-05-30
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
6ULH
DownloadVisualize
BU of 6ulh by Molmil
Structure of MavC in complex with its substrate in R3 spacegroup
分子名称: LPG2147 (MavC), Ubiquitin, Ubiquitin-conjugating enzyme E2 N
著者Iyer, S, Puvar, K, Das, C.
登録日2019-10-08
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.968 Å)
主引用文献Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
6UMS
DownloadVisualize
BU of 6ums by Molmil
Crystal structure of MavC in complex with its substrate mimic in C222(1) space group
分子名称: MavC, Ubiquitin, Ubiquitin-conjugating enzyme E2 N
著者Iyer, S, Puvar, K, Das, C.
登録日2019-10-10
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.344 Å)
主引用文献Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
6UMP
DownloadVisualize
BU of 6ump by Molmil
Crystal structure of MavC in complex with substrate mimic in P65 space group
分子名称: MavC, Ubiquitin, Ubiquitin-conjugating enzyme E2 N
著者Puvar, K, Iyer, S, Luo, Z.Q, Das, C.
登録日2019-10-10
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
6WTG
DownloadVisualize
BU of 6wtg by Molmil
SdeA DUB Domain in complex with Ubiquitin
分子名称: Ubiquitin, Ubiquitinating/deubiquitinating enzyme SdeA
著者Kenny, S, Sheedlo, M, Das, C.
登録日2020-05-02
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Insights into Ubiquitin Product Release in Hydrolysis Catalyzed by the Bacterial Deubiquitinase SdeA.
Biochemistry, 60, 2021
8UX2
DownloadVisualize
BU of 8ux2 by Molmil
Chromobacterium violaceum mono-ADP-ribosyltransferase CteC in complex with NAD+
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, NAD(+)--protein-threonine ADP-ribosyltransferase, ...
著者Zhang, Z, Rondon, H, Das, C.
登録日2023-11-08
公開日2024-01-17
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Crystal structure of bacterial ubiquitin ADP-ribosyltransferase CteC reveals a substrate-recruiting insertion.
J.Biol.Chem., 300, 2023
6D1R
DownloadVisualize
BU of 6d1r by Molmil
Structure of Staphylococcus aureus RNase P protein at 2.0 angstrom
分子名称: Ribonuclease P protein component
著者Ha, L, Colquhoun, J, Noinaj, N, Das, C, Dunman, P, Flaherty, D.P.
登録日2018-04-12
公開日2018-09-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.995 Å)
主引用文献Crystal structure of the ribonuclease-P-protein subunit from Staphylococcus aureus.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5KKV
DownloadVisualize
BU of 5kkv by Molmil
Metal-mediated coiled-coil GCN4-p2L peptide assembly crystal
分子名称: GCN4-p2L
著者Nepal, M, Sheedlo, M.J, Das, C, Chmielewski, J.
登録日2016-06-22
公開日2016-08-24
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Accessing Three-Dimensional Crystals with Incorporated Guests through Metal-Directed Coiled-Coil Peptide Assembly.
J.Am.Chem.Soc., 138, 2016
4O1Y
DownloadVisualize
BU of 4o1y by Molmil
Crystal structure of Porcine Pancreatic Phospholipase A2 in complex with 1-Naphthaleneacetic acid
分子名称: CALCIUM ION, NAPHTHALEN-1-YL-ACETIC ACID, Phospholipase A2, ...
著者Dileep, K.V, Remya, C, Tintu, I, Mandal, P.K, Karthe, P, Haridas, M, Sadasivan, C.
登録日2013-12-16
公開日2014-01-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of Porcine Pancreatic Phospholipase A2 in complex with 1-Naphthaleneacetic acid
To be published
6MRN
DownloadVisualize
BU of 6mrn by Molmil
Crystal Structure of ChlaDUB2 DUB domain
分子名称: Deubiquitinase and deneddylase Dub2
著者Hausman, J.M, Das, C.
登録日2018-10-15
公開日2019-10-30
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献The Two Deubiquitinating Enzymes fromChlamydia trachomatisHave Distinct Ubiquitin Recognition Properties.
Biochemistry, 59, 2020
7LM3
DownloadVisualize
BU of 7lm3 by Molmil
Crystal Structure of Thr316Ala mutant of JAMM domain of S. pombe
分子名称: AMSH-like protease sst2, PHOSPHATE ION, ZINC ION
著者Shrestha, R, Das, C.
登録日2021-02-05
公開日2021-06-30
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of the Thr316Ala mutant of a yeast JAMM deubiquitinase: implication of active-site loop dynamics in catalysis.
Acta Crystallogr.,Sect.F, 77, 2021
3USU
DownloadVisualize
BU of 3usu by Molmil
Crystal structure of Butea monosperma seed lectin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Abhilash, J, Geethanandan, K, Bharath, S.R, Sadasivan, C, Haridas, M.
登録日2011-11-24
公開日2012-01-04
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Crystal structure of Butea monosperma seed lectin
To be Published
3IRT
DownloadVisualize
BU of 3irt by Molmil
Crystal Structure of the I93M Mutant of Ubiquitin Carboxy-terminal Hydrolase L1
分子名称: CHLORIDE ION, Ubiquitin carboxyl-terminal hydrolase isozyme L1
著者Davies, C.W, Maiti, T.K, Das, C.
登録日2009-08-24
公開日2010-06-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.799 Å)
主引用文献Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation.
Proc.Natl.Acad.Sci.USA, 107, 2010
3KVF
DownloadVisualize
BU of 3kvf by Molmil
Crystal structure of the I93M mutant of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester
分子名称: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin carboxyl-terminal hydrolase isozyme L1
著者Davies, C.W, Maiti, T.K, Das, C.
登録日2009-11-30
公開日2010-06-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation.
Proc.Natl.Acad.Sci.USA, 107, 2010
3KW5
DownloadVisualize
BU of 3kw5 by Molmil
Crystal structure of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester
分子名称: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin carboxyl-terminal hydrolase isozyme L1
著者Maiti, T.K, Boudreaux, D.A, Das, C.
登録日2009-11-30
公開日2010-06-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.83 Å)
主引用文献Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation.
Proc.Natl.Acad.Sci.USA, 107, 2010
5CRC
DownloadVisualize
BU of 5crc by Molmil
Structure of the SdeA DUB Domain
分子名称: SdeA
著者Sheedlo, M.J, Qiu, J, Tan, Y, Paul, L.N, Luo, Z.Q, Das, C.
登録日2015-07-22
公開日2015-11-25
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (2.853 Å)
主引用文献Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination.
Proc.Natl.Acad.Sci.USA, 112, 2015
5CRB
DownloadVisualize
BU of 5crb by Molmil
Crystal Structure of SdeA DUB
分子名称: SdeA
著者Sheedlo, M.J, Qiu, J, Luo, Z.Q, Das, C.
登録日2015-07-22
公開日2015-11-25
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination.
Proc.Natl.Acad.Sci.USA, 112, 2015
5CRA
DownloadVisualize
BU of 5cra by Molmil
Structure of the SdeA DUB Domain
分子名称: METHYL 4-AMINOBUTANOATE, Polyubiquitin-B, SULFATE ION, ...
著者Sheedlo, M.J, Qiu, J, Luo, Z.Q, Das, C.
登録日2015-07-22
公開日2015-11-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination.
Proc.Natl.Acad.Sci.USA, 112, 2015

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon