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PDB: 68 件

2EGV
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BU of 2egv by Molmil
Crystal structure of rRNA methyltransferase with SAM ligand
分子名称: S-ADENOSYLMETHIONINE, UPF0088 protein aq_165
著者Dong, X, Shirouzu, M, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-02
公開日2007-09-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of rRNA methyltransferase with SAM ligand
To be Published
2EGW
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BU of 2egw by Molmil
Crystal structure of rRNA methyltransferase with SAH ligand
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, UPF0088 protein aq_165
著者Dong, X, Shirouzu, M, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-02
公開日2007-09-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of rRNA methyltransferase with SAH ligand
To be Published
6KOW
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BU of 6kow by Molmil
Retracted state of S65/T66 double-phosphorylated ubiquitin
分子名称: Polyubiquitin-B
著者Dong, X, Tang, C.
登録日2019-08-13
公開日2019-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch.
Protein Cell, 10, 2019
7LMV
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BU of 7lmv by Molmil
SPECIFIC INHIBITOR OF INTEGRIN ALPHA-V BETA-6
分子名称: Integrin inhibitor
著者Dong, X, Bera, A.K, Roy, A, Shi, L, Springer, T.A, Baker, D.
登録日2021-02-05
公開日2022-08-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献De novo design of highly selective miniprotein inhibitors of integrins alpha v beta 6 and alpha v beta 8.
Nat Commun, 14, 2023
7LMX
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A HIGHLY SPECIFIC INHIBITOR OF INTEGRIN ALPHA-V BETA-6 WITH A DISULFIDE
分子名称: Integrin inhibitor
著者Dong, X, Bera, A.K, Roy, A, Shi, L, Springer, T.A, Baker, D.
登録日2021-02-06
公開日2022-08-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献De novo design of highly selective miniprotein inhibitors of integrins alpha v beta 6 and alpha v beta 8.
Nat Commun, 14, 2023
4UM9
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BU of 4um9 by Molmil
Crystal structure of alpha V beta 6 with peptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Dong, X, Springer, T.A.
登録日2014-05-15
公開日2014-11-12
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Determinants of Integrin Beta-Subunit Specificity for Latent Tgf-Beta
Nat.Struct.Mol.Biol., 21, 2014
4UM8
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BU of 4um8 by Molmil
Crystal structure of alpha V beta 6
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CACODYLATE ION, ...
著者Dong, X, Springer, T.A.
登録日2014-05-15
公開日2014-11-12
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.852 Å)
主引用文献Structural Determinants of Integrin Beta-Subunit Specificity for Latent Tgf-Beta
Nat.Struct.Mol.Biol., 21, 2014
1WQL
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BU of 1wql by Molmil
Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01
分子名称: FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, OXYGEN MOLECULE, ...
著者Dong, X, Fushinobu, S, Fukuda, E, Terada, T, Nakamura, S, Shimizu, K, Nojiri, H, Omori, T, Shoun, H, Wakagi, T.
登録日2004-09-30
公開日2005-03-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01
J.BACTERIOL., 187, 2005
1Z9M
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BU of 1z9m by Molmil
Crystal Structure of Nectin-like molecule-1 protein Domain 1
分子名称: GAPA225
著者Dong, X, Xu, F, Gong, Y, Gao, J, Lin, P, Chen, T, Peng, Y, Qiang, B, Yuan, J, Peng, X, Rao, Z.
登録日2005-04-03
公開日2006-02-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of the V Domain of Human Nectin-like Molecule-1/Syncam3/Tsll1/Igsf4b, a Neural Tissue-specific Immunoglobulin-like Cell-Cell Adhesion Molecule
J.Biol.Chem., 281, 2006
1VS3
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BU of 1vs3 by Molmil
Crystal Structure of the tRNA Pseudouridine Synthase TruA From Thermus thermophilus HB8
分子名称: tRNA pseudouridine synthase A
著者Dong, X, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-06-28
公開日2006-12-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of tRNA pseudouridine synthase TruA from Thermus thermophilus HB8.
Rna Biol., 3, 2006
6N29
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BU of 6n29 by Molmil
Crystal structure of monomeric von Willebrand Factor D`D3 assembly
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Dong, X, Arndt, J.W, Springer, T.A.
登録日2018-11-12
公開日2019-01-23
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The von Willebrand factor D'D3 assembly and structural principles for factor VIII binding and concatemer biogenesis.
Blood, 133, 2019
3GB8
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BU of 3gb8 by Molmil
Crystal structure of CRM1/Snurportin-1 complex
分子名称: Exportin-1, Snurportin-1
著者Dong, X, Biswas, A, Suel, K.E, Jackson, L.K, Martinez, R, Gu, H, Chook, Y.M.
登録日2009-02-19
公開日2009-03-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for leucine-rich nuclear export signal recognition by CRM1.
Nature, 458, 2009
4G1E
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BU of 4g1e by Molmil
Crystal structure of integrin alpha V beta 3 with coil-coiled tag.
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Dong, X, Mi, L, Zhu, J, Wang, W, Luo, B, Springer, T.A.
登録日2012-07-10
公開日2012-12-12
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献AlphaV Beta3 Integrin Crystal Structures and their Functional Implications
Biochemistry, 51, 2012
8K31
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BU of 8k31 by Molmil
The complex of WRKY33 C terminal DBD and SIB1
分子名称: Probable WRKY transcription factor 33, Sigma factor binding protein 1, chloroplastic, ...
著者Dong, X, Gong, Z, Hu, Y.F.
登録日2023-07-14
公開日2024-06-19
実験手法SOLUTION NMR
主引用文献Structural basis for the regulation of plant transcription factor WRKY33 by the VQ protein SIB1.
Commun Biol, 7, 2024
8IVB
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BU of 8ivb by Molmil
K113-Ubiquitinated BAK
分子名称: Bcl-2 homologous antagonist/killer, Ubiquitin
著者Dong, X, Cheng, P, Hou, Y.Z, Chen, Y.K, Liu, Z.
登録日2023-03-26
公開日2024-01-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Parkin-mediated ubiquitination inhibits BAK apoptotic activity by blocking its canonical hydrophobic groove.
Commun Biol, 6, 2023
2L22
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BU of 2l22 by Molmil
Mupirocin didomain ACP
分子名称: Mupirocin didomain Acyl Carrier Protein
著者Dong, X, Williams, C, Crump, M.P, Wattana-amorn, P.
登録日2010-08-10
公開日2012-02-15
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A conserved motif flags acyl carrier proteins for beta-branching in polyketide synthesis.
Nat.Chem.Biol., 9, 2013
2MVV
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BU of 2mvv by Molmil
Solution Structure of the 5-phenyl-3-oxo-pentyl Actinorhodin Acyl Carrier Protein from Streptomyces coelicolor
分子名称: Actinorhodin polyketide synthase acyl carrier protein, N~3~-{(2S)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-N-{2-[(3-oxo-5-phenylpentyl)sulfanyl]ethyl}-beta-alaninamide
著者Dong, X, Bailey, C, Williams, C, Crosby, J, Simpson, T.J, Willis, C.L, Crump, M.P.
登録日2014-10-15
公開日2015-10-21
実験手法SOLUTION NMR
主引用文献ACP-ligand recognition: Selection of derivatized aromatic biosynthetic intermediates
To be Published
2MVU
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BU of 2mvu by Molmil
Solution Structure of the 3,7-dioxo-octyl Actinorhodin Acyl Carrier Protein from Streptomyces coelicolor
分子名称: Actinorhodin polyketide synthase acyl carrier protein, N~3~-{(2S)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-N-{2-[(3,7-dioxooctyl)sulfanyl]ethyl}-beta-alaninamide
著者Dong, X, Bailey, C, Williams, C, Crosby, J, Simpson, T.J, Willis, C.L, Crump, M.P.
登録日2014-10-15
公開日2015-10-21
実験手法SOLUTION NMR
主引用文献ACP-ligand recognition: Selection of derivatized aromatic biosynthetic intermediates
To be Published
2DUD
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BU of 2dud by Molmil
Crystal structure of human mitochondrial single-stranded DNA-binding protein(hmtSSB)
分子名称: Single-stranded DNA-binding protein
著者Dong, X, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-07-21
公開日2007-01-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of human mitochondrial single-stranded DNA-binding protein(hmtSSB)
To be Published
6KOX
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BU of 6kox by Molmil
Relaxed state of S65/T66 double-phosphorylated ubiquitin
分子名称: Polyubiquitin-B
著者Dong, X, Tang, C.
登録日2019-08-13
公開日2019-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch.
Protein Cell, 10, 2019
7EV8
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BU of 7ev8 by Molmil
Structure of Human Parainfluenza Virus 3 Unassembled Nucleoprotein in Complex with its viral chaperone
分子名称: Nucleoprotein, Phosphoprotein
著者Dong, X.F, Chen, Z.
登録日2021-05-20
公開日2021-11-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.234 Å)
主引用文献Structural Basis of Human Parainfluenza Virus 3 Unassembled Nucleoprotein in Complex with Its Viral Chaperone.
J.Virol., 96, 2022
7CYZ
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BU of 7cyz by Molmil
The structure of human ORP3 OSBP-related domain
分子名称: Oxysterol-binding protein-related protein 3
著者Dong, X.
登録日2020-09-05
公開日2020-10-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The crystal structure of ORP3 reveals the conservative PI4P binding pattern.
Biochem.Biophys.Res.Commun., 529, 2020
5FFO
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BU of 5ffo by Molmil
Integrin alpha V beta 6 in complex with pro-TGF-beta
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Dong, X, Zhao, B, Springer, T.A.
登録日2015-12-18
公開日2017-01-25
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (3.49 Å)
主引用文献Force interacts with macromolecular structure in activation of TGF-beta.
Nature, 542, 2017
5FFG
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Crystal structure of integrin alpha V beta 6 head
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Dong, X, Springer, T.A.
登録日2015-12-18
公開日2017-01-25
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Force interacts with macromolecular structure in activation of TGF-beta.
Nature, 542, 2017
8IEX
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Solution structure of AtWRKY11-DBD
分子名称: Probable WRKY transcription factor 11, ZINC ION
著者Dong, X, Hu, Y.F.
登録日2023-02-16
公開日2024-02-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of AtWRKY11-DBD
To Be Published

 

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