Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 3048 件

4V7H
DownloadVisualize
BU of 4v7h by Molmil
Structure of the 80S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
分子名称: 18S rRNA, 26S ribosomal RNA, 40S ribosomal protein S0(A), ...
著者Taylor, D.J, Devkota, B, Huang, A.D, Topf, M, Narayanan, E, Sali, A, Harvey, S.C, Frank, J.
登録日2009-09-22
公開日2014-07-09
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (8.9 Å)
主引用文献Comprehensive molecular structure of the eukaryotic ribosome.
Structure, 17, 2009
2PLV
DownloadVisualize
BU of 2plv by Molmil
STRUCTURAL FACTORS THAT CONTROL CONFORMATIONAL TRANSITIONS AND SEROTYPE SPECIFICITY IN TYPE 3 POLIOVIRUS
分子名称: HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP1), HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP2), HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP3), ...
著者Filman, D.J, Hogle, J.M.
登録日1989-10-17
公開日1989-10-17
最終更新日2023-04-19
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Structural factors that control conformational transitions and serotype specificity in type 3 poliovirus
EMBO J., 8, 1989
7SLS
DownloadVisualize
BU of 7sls by Molmil
HIV Reverse Transcriptase with compound Pyr02
分子名称: 5-(difluoromethyl)-3-{[1-{[(3S)-5-fluoro-2-methyl-6-oxo-3,6-dihydropyridin-3-yl]methyl}-6-oxo-4-(1,1,2,2-tetrafluoroethyl)-1,6-dihydropyrimidin-5-yl]oxy}-2-methylbenzonitrile, Reverse transcriptase/ribonuclease H
著者Klein, D.J, Zebisch, M, Gu, M.
登録日2021-10-24
公開日2022-11-23
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.078 Å)
主引用文献Potent targeted activator of cell kill molecules eliminate cells expressing HIV-1.
Sci Transl Med, 15, 2023
7SLR
DownloadVisualize
BU of 7slr by Molmil
HIV Reverse Transcriptase with compound Pyr01
分子名称: 5-(difluoromethyl)-3-({1-[(5-fluoro-2-oxo-1,2-dihydropyridin-3-yl)methyl]-6-oxo-4-(1,1,2,2-tetrafluoroethyl)-1,6-dihydropyrimidin-5-yl}oxy)-2-methylbenzonitrile, Reverse transcriptase/ribonuclease H
著者Klein, D.J, Zebisch, M, Gu, M.
登録日2021-10-24
公開日2022-11-23
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.179 Å)
主引用文献Potent targeted activator of cell kill molecules eliminate cells expressing HIV-1.
Sci Transl Med, 15, 2023
6EDB
DownloadVisualize
BU of 6edb by Molmil
Crystal structure of SRY.hcGAS-21bp dsDNA complex
分子名称: DNA (5'-D(*CP*GP*AP*TP*CP*CP*GP*GP*GP*AP*TP*CP*TP*AP*AP*AP*CP*AP*AP*TP*G)-3'), DNA (5'-D(*GP*CP*AP*TP*TP*GP*TP*TP*TP*AP*GP*AP*TP*CP*CP*CP*GP*GP*AP*TP*C)-3'), Sex-determining region Y protein,Cyclic GMP-AMP synthase, ...
著者Xie, W, Lama, L, Adura, C, Glickman, J.F, Tuschl, T, Patel, D.J.
登録日2018-08-09
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.209 Å)
主引用文献Human cGAS catalytic domain has an additional DNA-binding interface that enhances enzymatic activity and liquid-phase condensation.
Proc.Natl.Acad.Sci.USA, 116, 2019
3AKJ
DownloadVisualize
BU of 3akj by Molmil
Crystal structure of A Helicobacter pylori proinflammatory kinase CtkA
分子名称: CtkA
著者Kim, D.J, Suh, S.W.
登録日2010-07-14
公開日2010-12-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Helicobacter pylori proinflammatory protein up-regulates NF-kappaB as a cell-translocating Ser/Thr kinase
Proc.Natl.Acad.Sci.USA, 107, 2010
3AKL
DownloadVisualize
BU of 3akl by Molmil
Crystal structure of A Helicobacter pylori proinflammatory kinase CtkA
分子名称: ADENOSINE-5'-DIPHOSPHATE, Ctka, MAGNESIUM ION, ...
著者Kim, D.J, Suh, S.W.
登録日2010-07-14
公開日2010-12-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Helicobacter pylori proinflammatory protein up-regulates NF-kappaB as a cell-translocating Ser/Thr kinase
Proc.Natl.Acad.Sci.USA, 107, 2010
6F0K
DownloadVisualize
BU of 6f0k by Molmil
Alternative complex III
分子名称: ActD, ActF, ActH, ...
著者Sousa, J.S, Calisto, F, Mills, D.J, Pereira, M.M, Vonck, J, Kuehlbrandt, W.
登録日2017-11-20
公開日2018-05-09
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (3.87 Å)
主引用文献Structural basis for energy transduction by respiratory alternative complex III.
Nat Commun, 9, 2018
7T69
DownloadVisualize
BU of 7t69 by Molmil
Crystal structure of Avr3 (SIX1) from Fusarium oxysporum f. sp. lycopersici
分子名称: Avr3 (SIX1), Secreted in xylem 1, SULFATE ION
著者Yu, D.S, Outram, M.A, Ericsson, D.J, Jones, D.A, Williams, S.J.
登録日2021-12-13
公開日2023-01-11
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献The structural repertoire of Fusarium oxysporum f. sp. lycopersici effectors revealed by experimental and computational studies
Elife, 2023
3AKK
DownloadVisualize
BU of 3akk by Molmil
Crystal structure of A Helicobacter pylori proinflammatory kinase CtkA
分子名称: ADENOSINE-5'-DIPHOSPHATE, CtkA, MAGNESIUM ION
著者Kim, D.J, Suh, S.W.
登録日2010-07-14
公開日2010-12-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Helicobacter pylori proinflammatory protein up-regulates NF-kappaB as a cell-translocating Ser/Thr kinase
Proc.Natl.Acad.Sci.USA, 107, 2010
7T6A
DownloadVisualize
BU of 7t6a by Molmil
Crystal structure of Avr1 (SIX4) from Fusarium oxysporum f. sp. lycopersici
分子名称: Avr1 (FolSIX4), Avirulence protein 1, Avr1 (SIX4), ...
著者Yu, D.S, Outram, M.A, Ericsson, D.J, Jones, D.A, Williams, S.J.
登録日2021-12-13
公開日2023-01-11
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The structural repertoire of Fusarium oxysporum f. sp. lycopersici effectors revealed by experimental and computational studies
Elife, 2023
6F24
DownloadVisualize
BU of 6f24 by Molmil
PH domain from PfAPH
分子名称: C-terminal PH domain from PfAPH
著者Darvill, N, Liu, B, Matthews, S, Soldati-Favre, D, Rouse, S, Benjamin, S, Blake, T, Dubois, D.J, Hammoudi, P.M, Pino, P.
登録日2017-11-23
公開日2018-12-12
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献C-terminal PH domain from P. falciparum acylated plekstrin homology domain containing protein (APH)
To Be Published
1DNL
DownloadVisualize
BU of 1dnl by Molmil
X-RAY STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5'-PHOSPHATE OXIDASE COMPLEXED WITH FMN AT 1.8 ANGSTROM RESOLUTION
分子名称: FLAVIN MONONUCLEOTIDE, PHOSPHATE ION, PYRIDOXINE 5'-PHOSPHATE OXIDASE
著者Safo, M.K, Mathews, I, Musayev, F.N, di Salvo, M.L, Thiel, D.J, Abraham, D.J, Schirch, V.
登録日1999-12-16
公開日2000-01-05
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with FMN at 1.8 A resolution.
Structure Fold.Des., 8, 2000
1DWW
DownloadVisualize
BU of 1dww by Molmil
MURINE INDUCIBLE NITRIC OXIDE SYNTHASE OXYGENASE DIMER N-hydroxyarginine and dihydrobiopterin
分子名称: 2-AMINO-6-(1,2-DIHYDROXY-PROPYL)-7,8-DIHYDRO-6H-PTERIDIN-4-ONE, N-OMEGA-HYDROXY-L-ARGININE, NITRIC OXIDE SYNTHASE, ...
著者Crane, B.R, Arvai, A.S, Getzoff, E.D, Stuehr, D.J, Tainer, J.A.
登録日1999-12-14
公開日2000-02-06
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structures of the N(Omega)-Hydroxy-L-Arginine Complex of Inducible Nitric Oxide Synthase Oxygenase Dimer with Active Andinactive Pterins
Biochemistry, 39, 2000
1DWX
DownloadVisualize
BU of 1dwx by Molmil
MURINE INDUCIBLE NITRIC OXIDE SYNTHASE OXYGENASE DIMER N-hydroxyarginine and tetrahydrobiopterin
分子名称: 5,6,7,8-TETRAHYDROBIOPTERIN, N-OMEGA-HYDROXY-L-ARGININE, NITRIC OXIDE SYNTHASE, ...
著者Crane, B.R, Arvai, A.S, Getzoff, E.D, Stuehr, D.J, Tainer, J.A.
登録日1999-12-14
公開日2000-02-06
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures of the N(Omega)-Hydroxy-L-Arginine Complex of Inducible Nitric Oxide Synthase Oxygenase Dimer with Active Andinactive Pterins
Biochemistry, 39, 2000
1DWV
DownloadVisualize
BU of 1dwv by Molmil
MURINE INDUCIBLE NITRIC OXIDE SYNTHASE OXYGENASE DIMER N-hydroxyarginine and 4-amino tetrahydrobiopterin
分子名称: 2,4-DIAMINO-6-[2,3-DIHYDROXY-PROP-3-YL]-5,6,7,8-TETRAHYDROPTERIDINE, N-OMEGA-HYDROXY-L-ARGININE, NITRIC OXIDE SYNTHASE, ...
著者Crane, B.R, Arvai, A.S, Getzoff, E.D, Stuehr, D.J, Tainer, J.A.
登録日1999-12-14
公開日2000-02-06
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structures of the N(Omega)-Hydroxy-L-Arginine Complex of Inducible Nitric Oxide Synthase Oxygenase Dimer with Active Andinactive Pterins
Biochemistry, 39, 2000
1EWS
DownloadVisualize
BU of 1ews by Molmil
THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE RABBIT KIDNEY DEFENSIN, RK-1
分子名称: RK-1 DEFENSIN
著者McManus, A.M, Dawson, N.F, Wade, J.D, Craik, D.J.
登録日2000-04-26
公開日2001-05-02
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Three-dimensional structure of RK-1: a novel alpha-defensin peptide.
Biochemistry, 39, 2000
3S85
DownloadVisualize
BU of 3s85 by Molmil
Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611.
分子名称: Protease/reverse transcriptase, methyl N-[(2S)-1-[[(2S,3S,5S)-5-[[(2S)-2-(methoxycarbonylamino)-3,3-dimethyl-butanoyl]amino]-3-oxidanyl-6-phenyl-1-(4-pyridin-3-ylphenyl)hexan-2-yl]amino]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate
著者DeGoey, D.A, Flosi, W.J, Grampovnik, D.J, Flentge, C.A.
登録日2011-05-27
公開日2012-04-11
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献2-Pyridyl P1'-substituted symmetry-based human immunodeficiency virus protease inhibitors (A-792611 and A-790742) with potential for convenient dosing and reduced side effects.
J.Med.Chem., 52, 2009
5OO3
DownloadVisualize
BU of 5oo3 by Molmil
Cdk2(F80C, C177A) with covalent ligand at F80C
分子名称: 1-(4-ethyl-2,3-dihydroquinoxalin-1-yl)propan-1-one, Cyclin-dependent kinase 2
著者Craven, G, Morgan, R.M.L, Mann, D.J.
登録日2017-08-05
公開日2018-08-29
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献High-throughput kinetic analysis for target-directed covalent ligand discovery
To Be Published
5OSM
DownloadVisualize
BU of 5osm by Molmil
Cdk2(F80C, C177A) with covalent adduct at C80
分子名称: Cyclin-dependent kinase 2, methyl 1-propanoyl-3,4-dihydro-2~{H}-quinoline-6-carboxylate
著者Craven, G, Morgan, R.M.L, Mann, D.J.
登録日2017-08-17
公開日2018-03-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献High-Throughput Kinetic Analysis for Target-Directed Covalent Ligand Discovery.
Angew. Chem. Int. Ed. Engl., 57, 2018
5OSJ
DownloadVisualize
BU of 5osj by Molmil
Cdk2(WT) with covalent adduct at C177
分子名称: Cyclin-dependent kinase 2, ~{tert}-butyl 4-propanoyl-2,3-dihydroquinoxaline-1-carboxylate
著者Craven, G, Morgan, R.M.L, Mann, D.J.
登録日2017-08-17
公開日2018-03-14
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献High-Throughput Kinetic Analysis for Target-Directed Covalent Ligand Discovery.
Angew. Chem. Int. Ed. Engl., 57, 2018
5OSN
DownloadVisualize
BU of 5osn by Molmil
Crystal Structure of Bovine Enterovirus 2 determined with Serial Femtosecond X-ray Crystallography
分子名称: Capsid protein, GLUTAMIC ACID, POTASSIUM ION, ...
著者Roedig, P, Ginn, H.M, Pakendorf, T, Sutton, G, Harlos, K, Walter, T.S, Meyer, J, Fischer, P, Duman, R, Vartiainen, I, Reime, B, Warmer, M, Brewster, A.S, Young, I.D, Michels-Clark, T, Sauter, N.K, Kotecha, A, Kelly, J, Rowlands, D.J, Sikorsky, M, Nelson, S, Damiani, D.S, Alonso-Mori, R, Ren, J, Fry, E.E, David, C, Stuart, D.I, Wagner, A, Meents, A.
登録日2017-08-17
公開日2017-08-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献High-speed fixed-target serial virus crystallography.
Nat. Methods, 14, 2017
5BXA
DownloadVisualize
BU of 5bxa by Molmil
Structure of PslG from Pseudomonas aeruginosa in complex with mannose
分子名称: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ...
著者Baker, P, Little, D.J, Howell, P.L.
登録日2015-06-08
公開日2015-10-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Characterization of the Pseudomonas aeruginosa Glycoside Hydrolase PslG Reveals That Its Levels Are Critical for Psl Polysaccharide Biosynthesis and Biofilm Formation.
J.Biol.Chem., 290, 2015
5BX9
DownloadVisualize
BU of 5bx9 by Molmil
Structure of PslG from Pseudomonas aeruginosa
分子名称: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ...
著者Baker, P, Little, D.J, Howell, P.L.
登録日2015-06-08
公開日2015-10-07
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献Characterization of the Pseudomonas aeruginosa Glycoside Hydrolase PslG Reveals That Its Levels Are Critical for Psl Polysaccharide Biosynthesis and Biofilm Formation.
J.Biol.Chem., 290, 2015
2H8S
DownloadVisualize
BU of 2h8s by Molmil
Solution structure of alpha-conotoxin Vc1.1
分子名称: Alpha-conotoxin Vc1A
著者Clark, R.J, Fischer, H, Nevin, S.T, Adams, D.J, Craik, D.J.
登録日2006-06-07
公開日2006-06-27
最終更新日2024-10-09
実験手法SOLUTION NMR
主引用文献The Synthesis, Structural Characterization, and Receptor Specificity of the {alpha}-Conotoxin Vc1.1.
J.Biol.Chem., 281, 2006

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon