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PDB: 3048 results

3RAQ
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BU of 3raq by Molmil
Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesion
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Rechkoblit, O, Patel, D.J.
Deposit date:2011-03-28
Release date:2011-06-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions.
Structure, 19, 2011
2V8S
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BU of 2v8s by Molmil
VTI1B HABC DOMAIN - EPSINR ENTH DOMAIN COMPLEX
Descriptor: CLATHRIN INTERACTOR 1, GLYCEROL, VESICLE TRANSPORT THROUGH INTERACTION WITH T-SNARES HOMOLOG 1B
Authors:Owen, D.J, McCoy, A.J, Collins, B.M, Miller, S.E.
Deposit date:2007-08-14
Release date:2007-11-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:A Snare-Adaptor Interaction is a New Mode of Cargo Recognition in Clathrin Coated Vesicles
Nature, 450, 2007
4KBR
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BU of 4kbr by Molmil
Crystal structure of mouse Ceramide-1-phosphate transfer protein (apo-form)
Descriptor: Glycolipid transfer protein domain-containing protein 1, PHOSPHATE ION
Authors:Simanshu, D.K, Brown, R.E, Patel, D.J.
Deposit date:2013-04-23
Release date:2013-07-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.547 Å)
Cite:Non-vesicular trafficking by a ceramide-1-phosphate transfer protein regulates eicosanoids.
Nature, 500, 2013
4K84
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BU of 4k84 by Molmil
Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 16:0 ceramide-1-phosphate (16:0-C1P)
Descriptor: (2S,3R,4E)-2-(hexadecanoylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, Glycolipid transfer protein domain-containing protein 1
Authors:Simanshu, D.K, Brown, R.E, Patel, D.J.
Deposit date:2013-04-17
Release date:2013-07-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Non-vesicular trafficking by a ceramide-1-phosphate transfer protein regulates eicosanoids.
Nature, 500, 2013
4K9A
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BU of 4k9a by Molmil
Structure of Ternary Complex of cGAS with dsDNA and Bound 5 -pG(2 ,5 )pA
Descriptor: ADENOSINE MONOPHOSPHATE, Cyclic GMP-AMP synthase, DNA-F, ...
Authors:Gao, P, Wu, Y, Patel, D.J.
Deposit date:2013-04-19
Release date:2013-05-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.264 Å)
Cite:Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase.
Cell(Cambridge,Mass.), 153, 2013
3O33
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BU of 3o33 by Molmil
Crystal structure of TRIM24 PHD-Bromo in the free state
Descriptor: Transcription intermediary factor 1-alpha, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2010-07-23
Release date:2010-12-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:TRIM24 links a non-canonical histone signature to breast cancer.
Nature, 468, 2010
3O7X
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BU of 3o7x by Molmil
Crystal structure of human Hili PAZ domain
Descriptor: Piwi-like protein 2
Authors:Tian, Y, Simanshu, D.K, Ma, J.-B, Patel, D.J.
Deposit date:2010-08-01
Release date:2011-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9248 Å)
Cite:Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
2QHV
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BU of 2qhv by Molmil
Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B
Descriptor: Lipoyltransferase, OCTAN-1-OL
Authors:Kim, D.J, Lee, S.J, Kim, H.S, Kim, K.H, Lee, H.H, Yoon, H.J, Suh, S.W.
Deposit date:2007-07-03
Release date:2008-02-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis of octanoic acid recognition by lipoate-protein ligase B
Proteins, 70, 2008
4KSD
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BU of 4ksd by Molmil
Structures of P-glycoprotein reveal its conformational flexibility and an epitope on the nucleotide-binding domain
Descriptor: Multidrug resistance protein 1A, R2 protein
Authors:Ward, A, Szewczyk, P, Grimard, V, Lee, C.-W, Martinez, L, Doshi, R, Caya, A, Villaluz, M, Pardon, E, Cregger, C, Swartz, D.J, Falson, P, Urbatsch, I, Govaerts, C, Steyaert, J, Chang, G.
Deposit date:2013-05-17
Release date:2013-07-31
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (4.1001 Å)
Cite:Structures of P-glycoprotein reveal its conformational flexibility and an epitope on the nucleotide-binding domain.
Proc.Natl.Acad.Sci.USA, 110, 2013
2QHT
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BU of 2qht by Molmil
Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B
Descriptor: Lipoyltransferase
Authors:Kim, D.J, Lee, S.J, Kim, H.S, Kim, K.H, Lee, H.H, Yoon, H.J, Suh, S.W.
Deposit date:2007-07-02
Release date:2008-02-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of octanoic acid recognition by lipoate-protein ligase B
Proteins, 70, 2008
2QOS
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BU of 2qos by Molmil
Crystal structure of complement protein C8 in complex with a peptide containing the C8 binding site on C8
Descriptor: Complement component 8, gamma polypeptide, Complement component C8 alpha chain
Authors:Lovelace, L.L, Chiswell, B, Slade, D.J, Sodetz, J.M, Lebioda, L.
Deposit date:2007-07-20
Release date:2007-10-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystal structure of complement protein C8gamma in complex with a peptide containing the C8gamma binding site on C8alpha: Implications for C8gamma ligand binding.
Mol.Immunol., 45, 2008
4KSC
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BU of 4ksc by Molmil
Structures of P-glycoprotein reveal its conformational flexibility and an epitope on the nucleotide-binding domain
Descriptor: Multidrug resistance protein 1A
Authors:Ward, A, Szewczyk, P, Grimard, V, Lee, C.-W, Martinez, L, Doshi, R, Caya, A, Villaluz, M, Pardon, E, Cregger, C, Swartz, D.J, Falson, P, Urbatsch, I, Govaerts, C, Steyaert, J, Chang, G.
Deposit date:2013-05-17
Release date:2013-07-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structures of P-glycoprotein reveal its conformational flexibility and an epitope on the nucleotide-binding domain.
Proc.Natl.Acad.Sci.USA, 110, 2013
4K97
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BU of 4k97 by Molmil
Structure of Ternary Complex of cGAS with dsDNA and Bound ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, DNA-F, ...
Authors:Gao, P, Wu, Y, Patel, D.J.
Deposit date:2013-04-19
Release date:2013-05-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase.
Cell(Cambridge,Mass.), 153, 2013
4KXT
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BU of 4kxt by Molmil
Structure of human ARGONAUTE1 in complex with guide RNA
Descriptor: Protein argonaute-1, RNA
Authors:Nakanishi, K, Patel, D.J.
Deposit date:2013-05-28
Release date:2013-07-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.294 Å)
Cite:Eukaryote-Specific Insertion Elements Control Human ARGONAUTE Slicer Activity.
Cell Rep, 3, 2013
2V6Y
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BU of 2v6y by Molmil
Structure of the MIT domain from a S. solfataricus Vps4-like ATPase
Descriptor: AAA FAMILY ATPASE, P60 KATANIN, S,R MESO-TARTARIC ACID
Authors:Obita, T, Saksena, S, Ghazi-Tabatabai, S, Gill, D.J, Perisic, O, Emr, S.D, Williams, R.L.
Deposit date:2007-07-24
Release date:2007-10-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for Selective Recognition of Escrt-III by the Aaa ATPase Vps4
Nature, 449, 2007
2VEO
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BU of 2veo by Molmil
X-ray structure of Candida antarctica lipase A in its closed state.
Descriptor: GLYCEROL, LIPASE A, TETRAETHYLENE GLYCOL, ...
Authors:Ericsson, D.J, Kasrayan, A, Johansson, P, Bergfors, T, Sandstrom, A.G, Backvall, J.E, Mowbray, S.L.
Deposit date:2007-10-25
Release date:2007-11-06
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-Ray Structure of Candida Antarctica Lipase a Shows a Novel Lid Structure and a Likely Mode of Interfacial Activation.
J.Mol.Biol., 376, 2008
3O7V
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BU of 3o7v by Molmil
Crystal Structure of human Hiwi1 (V361M) PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OCH3 at its 3'-end
Descriptor: Piwi-like protein 1, RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*(OMU))-3')
Authors:Tian, Y, Simanshu, D.K, Ma, J.-B, Patel, D.J.
Deposit date:2010-08-01
Release date:2011-01-12
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
4KY0
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BU of 4ky0 by Molmil
Crystal structure of a substrate-free glutamate transporter homologue from Thermococcus kodakarensis
Descriptor: Proton/glutamate symporter, SDF family, TETRAETHYLENE GLYCOL
Authors:Guskov, A, Jensen, S, Rempel, S, Hanelt, I, Slotboom, D.J.
Deposit date:2013-05-28
Release date:2013-09-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of a substrate-free aspartate transporter.
Nat.Struct.Mol.Biol., 20, 2013
4KNS
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BU of 4kns by Molmil
Reduced crystal structure of the Nitrosomonas europaea copper nitrite reductase at pH 6.5
Descriptor: CHLORIDE ION, COPPER (II) ION, GLYCEROL, ...
Authors:Rosenzweig, A.C, Lawton, T.L, Sayavedra-Soto, L.A, Arp, D.J.
Deposit date:2013-05-10
Release date:2013-07-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Characterization of a nitrite reductase involved in nitrifier denitrification.
J.Biol.Chem., 288, 2013
2VXY
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BU of 2vxy by Molmil
The structure of FTsZ from Bacillus subtilis at 1.7A resolution
Descriptor: CELL DIVISION PROTEIN FTSZ, CITRIC ACID, POTASSIUM ION
Authors:Barynin, V.V, Baker, P.J, Rice, D.W, Sedelnikova, S.E, Haydon, D.J, Stokes, N.R, Ure, R, Galbraith, G, Bennett, J.M, Brown, D.R, Heal, J.R, Sheridan, J.M, Aiwale, S.T, Chauhan, P.K, Srivastava, A, Taneja, A, Collins, I, Errington, J, Czaplewski, L.G.
Deposit date:2008-07-15
Release date:2008-09-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:An Inhibitor of Ftsz with Potent and Selective Anti-Staphylococcal Activity.
Science, 321, 2008
3O37
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BU of 3o37 by Molmil
Crystal structure of TRIM24 PHD-Bromo complexed with H3(1-10)K4 peptide
Descriptor: Histone H3.1, Transcription intermediary factor 1-alpha, ZINC ION
Authors:Wang, Z, Patel, D.J.
Deposit date:2010-07-23
Release date:2010-12-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:TRIM24 links a non-canonical histone signature to breast cancer.
Nature, 468, 2010
3ODN
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BU of 3odn by Molmil
The crystal structure of Drosophila Dally-Like Protein core domain
Descriptor: Dally-like protein
Authors:Kim, M.-S, Leahy, D.J.
Deposit date:2010-08-11
Release date:2011-07-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the protein core of the glypican Dally-like and localization of a region important for hedgehog signaling.
Proc.Natl.Acad.Sci.USA, 108, 2011
4KPT
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BU of 4kpt by Molmil
Crystal structure of substrate binding domain 1 (SBD1) OF ABC transporter GLNPQ from lactococcus lactis
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Vujicic Zagar, A, Guskov, A, Schuurman-Wolters, G.K, Slotboom, D.J, Poolman, B.
Deposit date:2013-05-14
Release date:2013-09-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Functional Diversity of Tandem Substrate-Binding Domains in ABC Transporters from Pathogenic Bacteria.
Structure, 21, 2013
4KR5
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BU of 4kr5 by Molmil
Crystal structure of Lactococcus lactis GlnP substrate binding domain 2 (SBD2) in open conformation
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ...
Authors:Vujicic Zagar, A, Guskov, A, Schuurman-Wolters, G.K, Slotboom, D.J, Poolman, B.
Deposit date:2013-05-16
Release date:2013-09-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Functional Diversity of Tandem Substrate-Binding Domains in ABC Transporters from Pathogenic Bacteria.
Structure, 21, 2013
3O6E
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BU of 3o6e by Molmil
Crystal Structure of human Hiwi1 PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OCH3 at its 3'-end
Descriptor: Piwi-like protein 1, RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*(OMU))-3')
Authors:Tian, Y, Simanshu, D.K, Ma, J.-B, Patel, D.J.
Deposit date:2010-07-28
Release date:2011-01-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.904 Å)
Cite:Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011

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PDB entries from 2024-11-06

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