Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 22322 件

4B2W
DownloadVisualize
BU of 4b2w by Molmil
Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE, ...
著者Alphey, M.S, Pirrie, L, Torrie, L, Gardiner, M, Westwood, N.J, Gray, D, Naismith, J.H.
登録日2012-07-18
公開日2013-05-29
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Allosteric competitive inhibitors of the glucose-1-phosphate thymidylyltransferase (RmlA) from Pseudomonas aeruginosa.
ACS Chem. Biol., 8, 2013
4AUN
DownloadVisualize
BU of 4aun by Molmil
Crystal structure, recombinant expression and mutagenesis studies of the bifunctional catalase-phenol oxidase from Scytalidium thermophilum
分子名称: CALCIUM ION, CATALASE-PHENOL OXIDASE, CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE
著者Yuzugullu, Y, Trinh, C.H, Smith, M.A, Pearson, A.R, Phillips, S.E.V, Sutay Kocabas, D, Bakir, U, Ogel, Z.B, McPherson, M.J.
登録日2012-05-18
公開日2013-02-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structure, Recombinant Expression and Mutagenesis Studies of the Catalase with Oxidase Activity from Scytalidium Thermophilum
Acta Crystallogr.,Sect.D, 69, 2013
4BCC
DownloadVisualize
BU of 4bcc by Molmil
PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A COVALENTLY BOUND P2- substituted N-acyl-prolylpyrrolidine inhibitor
分子名称: GLYCEROL, PROLYL ENDOPEPTIDASE, TRIS(HYDROXYETHYL)AMINOMETHANE, ...
著者VanDerVeken, P, Fulop, V, Rea, D, Gerard, M, VanElzen, R, Joossens, J, Cheng, J.D, Baekelandt, V, DeMeester, I, Lambeir, A.M, Augustyns, K.
登録日2012-10-01
公開日2013-03-13
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献P2-Substituted N-Acylprolylpyrrolidine Inhibitors of Prolyl Oligopeptidase: Biochemical Evaluation, Binding Mode Determination, and Assessment in a Cellular Model of Synucleinopathy.
J.Med.Chem., 55, 2012
4B3U
DownloadVisualize
BU of 4b3u by Molmil
Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-amino-1-benzyl-5-(ethylamino)pyrimidine-2,4(1H,3H)-dione, CHLORIDE ION, ...
著者Alphey, M.S, Pirrie, L, Torrie, L.S, Gardiner, M, Sarkar, A, Brenk, R, Westwood, N.J, Gray, D, Naismith, J.H.
登録日2012-07-26
公開日2012-10-31
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Allosteric competitive inhibitors of the glucose-1-phosphate thymidylyltransferase (RmlA) from Pseudomonas aeruginosa.
ACS Chem. Biol., 8, 2013
4B5C
DownloadVisualize
BU of 4b5c by Molmil
Crystal structure of the peptidoglycan-associated lipoprotein from Burkholderia pseudomallei
分子名称: ACETATE ION, PUTATIVE OMPA FAMILY LIPOPROTEIN
著者Gourlay, L.J, Peri, C, Conchillo-Sole, O, Ferrer-Navarro, M, Gori, A, Longhi, R, Rinchai, D, Lertmemongkolchai, G, Lassaux, P, Daura, X, Colombo, G, Bolognesi, M.
登録日2012-08-03
公開日2013-08-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Exploiting the Burkholderia Pseudomallei Acute Phase Antigen Bpsl2765 for Structure-Based Epitope Discovery/Design in Structural Vaccinology.
Chem.Biool., 20, 2013
4H29
DownloadVisualize
BU of 4h29 by Molmil
B-raf dimer DNA quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*CP*GP*GP*GP*GP*AP*GP*GP*GP*GP*GP*AP*AP*GP*GP*GP*A)-3'), POTASSIUM ION
著者Wei, D, Parkinson, G, Neidle, S.
登録日2012-09-12
公開日2013-07-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.991 Å)
主引用文献Crystal Structure of a Promoter Sequence in the B-raf Gene Reveals an Intertwined Dimer Quadruplex.
J.Am.Chem.Soc., 135, 2013
4AYE
DownloadVisualize
BU of 4aye by Molmil
Structure of a complex between CCPs 6 and 7 of Human Complement Factor H and Neisseria meningitidis FHbp Variant 1 E283AE304A mutant
分子名称: 1,2-ETHANEDIOL, COMPLEMENT FACTOR H, FACTOR H BINDING PROTEIN
著者Johnson, S, Tan, L, van der Veen, S, Caesar, J, Goicoechea De Jorge, E, Everett, R.J, Bai, X, Exley, R.M, Ward, P.N, Ruivo, N, Trivedi, K, Cumber, E, Jones, R, Newham, L, Staunton, D, Borrow, R, Pickering, M, Lea, S.M, Tang, C.M.
登録日2012-06-20
公開日2012-11-07
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Design and Evaluation of Meningococcal Vaccines Through Structure-Based Modification of Host and Pathogen Molecules.
Plos Pathog., 8, 2012
4BFQ
DownloadVisualize
BU of 4bfq by Molmil
Assembly of a triple pi-stack of ligands in the binding site of Aplysia californica acetylcholine binding protein (AChBP)
分子名称: 4,6-dimethyl-N'-(3-pyridin-2-ylisoquinolin-1-yl)pyrimidine-2-carboximidamide, GLYCEROL, SOLUBLE ACETYLCHOLINE RECEPTOR
著者Stornaiuolo, M, De Kloe, G.E, Rucktooa, P, Fish, A, van Elk, R, Edink, E.S, Bertrand, D, Smit, A.B, de Esch, I.J.P, Sixma, T.K.
登録日2013-03-21
公開日2013-05-22
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Assembly of a Pi-Pi Stack of Ligands in the Binding Site of an Acetylcholine Binding Protein
Nat.Commun., 4, 2013
4H35
DownloadVisualize
BU of 4h35 by Molmil
Feruloyl Esterase Domain of XYNY from Clostridium thermocellum before exposure to 266nm UV laser
分子名称: CADMIUM ION, Endo-1,4-beta-xylanase Y
著者Pereira, P.J.B, de Sanctis, D.
登録日2012-09-13
公開日2012-12-12
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献In-house UV radiation-damage-induced phasing of selenomethionine-labeled protein structures.
J.Struct.Biol., 181, 2013
4HD0
DownloadVisualize
BU of 4hd0 by Molmil
Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair
分子名称: DNA double-strand break repair protein Mre11, MANGANESE (II) ION
著者Limbo, O, Moiani, D, Kertokalio, A, Wyman, C, Tainer, J.A, Russell, P.
登録日2012-10-01
公開日2012-10-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair.
Nucleic Acids Res., 40, 2012
4B4B
DownloadVisualize
BU of 4b4b by Molmil
Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor
分子名称: 1-(2-phenylethyl)pyrimidine-2,4,6(1H,3H,5H)-trione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
著者Alphey, M.S, Pirrie, L, Torrie, L.S, Gardiner, M, Sarkar, A, Brenk, R, Westwood, N.J, Gray, D, Naismith, J.H.
登録日2012-07-30
公開日2012-10-31
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Allosteric competitive inhibitors of the glucose-1-phosphate thymidylyltransferase (RmlA) from Pseudomonas aeruginosa.
ACS Chem. Biol., 8, 2013
4GG4
DownloadVisualize
BU of 4gg4 by Molmil
Crystal structure of the TAL effector dHax3 bound to specific DNA-RNA hybrid
分子名称: DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3, RNA (5'-R(*AP*GP*AP*GP*AP*GP*AP*UP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3')
著者Yin, P, Deng, D, Yan, C.Y, Pan, X.J, Yan, N, Shi, Y.G.
登録日2012-08-05
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Specific DNA-RNA hybrid recognition by TAL effectors
Cell Rep, 2, 2012
4GJR
DownloadVisualize
BU of 4gjr by Molmil
Crystal structure of the TAL effector dHax3 bound to methylated dsDNA
分子名称: DNA (5'-D(*AP*GP*GP*GP*AP*GP*GP*TP*AP*GP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*(5CM)P*TP*AP*(5CM)P*CP*TP*CP*(5CM)P*CP*T)-3'), Hax3
著者Yan, N, Deng, D, Yan, C.Y, Yin, P, Pan, X.J, Shi, Y.G.
登録日2012-08-10
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of a protein complex
To be Published
4BK5
DownloadVisualize
BU of 4bk5 by Molmil
crystal structure of the human EphA4 ectodomain in complex with human ephrin A5 (amine-methylated sample)
分子名称: EPHRIN TYPE-A RECEPTOR 4, EPHRIN-A5
著者Seiradake, E, Schaupp, A, del Toro Ruiz, D, Kaufmann, R, Mitakidis, N, Harlos, K, Aricescu, A.R, Klein, R, Jones, E.Y.
登録日2013-04-22
公開日2013-07-03
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Structurally Encoded Intraclass Differences in Epha Clusters Drive Distinct Cell Responses
Nat.Struct.Mol.Biol., 20, 2013
1TEV
DownloadVisualize
BU of 1tev by Molmil
Crystal structure of the human UMP/CMP kinase in open conformation
分子名称: SULFATE ION, UMP-CMP kinase
著者Segura-Pena, D, Sekulic, N, Ort, S, Konrad, M, Lavie, A.
登録日2004-05-25
公開日2004-06-22
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate-induced Conformational Changes in Human UMP/CMP Kinase.
J.Biol.Chem., 279, 2004
4BKF
DownloadVisualize
BU of 4bkf by Molmil
crystal structure of the human EphA4 ectodomain in complex with human ephrinB3
分子名称: EPHRIN TYPE-A RECEPTOR 4, EPHRIN-B3
著者Seiradake, E, Schaupp, A, del Toro Ruiz, D, Kaufmann, R, Mitakidis, N, Harlos, K, Aricescu, A.R, Klein, R, Jones, E.Y.
登録日2013-04-24
公開日2013-07-03
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (4.65 Å)
主引用文献Structurally Encoded Intraclass Differences in Epha Clusters Drive Distinct Cell Responses
Nat.Struct.Mol.Biol., 20, 2013
4BHW
DownloadVisualize
BU of 4bhw by Molmil
Structural basis for autoinhibition of the acetyltransferase activity of p300
分子名称: HISTONE ACETYLTRANSFERASE P300, ZINC ION, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R,20R)-20-carbamoyl-3-hydroxy-2,2-dimethyl-4,8,14,22-tetraoxo-12-thia-5,9,15,21-tetraazatricos-1-yl dihydrogen diphosphate
著者Delvecchio, M, Gaucher, J, Aguilar-Gurrieri, C, Ortega, E, Panne, D.
登録日2013-04-08
公開日2013-08-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.799 Å)
主引用文献Structure of the P300 Catalytic Core and Implications for Chromatin Targeting and Hat Regulation
Nat.Struct.Mol.Biol., 20, 2013
4AYI
DownloadVisualize
BU of 4ayi by Molmil
Structure of a complex between CCPs 6 and 7 of Human Complement Factor H and Neisseria meningitidis FHbp Variant 3 Wild type
分子名称: 1,2-ETHANEDIOL, COMPLEMENT FACTOR H, LIPOPROTEIN GNA1870 CCOMPND 7
著者Johnson, S, Tan, L, van der Veen, S, Caesar, J, Goicoechea De Jorge, E, Everett, R.J, Bai, X, Exley, R.M, Ward, P.N, Ruivo, N, Trivedi, K, Cumber, E, Jones, R, Newham, L, Staunton, D, Borrow, R, Pickering, M, Lea, S.M, Tang, C.M.
登録日2012-06-21
公開日2012-11-07
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Design and Evaluation of Meningococcal Vaccines Through Structure-Based Modification of Host and Pathogen Molecules.
Plos Pathog., 8, 2012
4BJ3
DownloadVisualize
BU of 4bj3 by Molmil
Integrin alpha2 I domain E318W-collagen complex
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GFOGER PEPTIDE, ...
著者Carafoli, F, Hamaia, S.W, Bihan, D, Hohenester, E, Farndale, R.W.
登録日2013-04-16
公開日2013-11-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.042 Å)
主引用文献An Activating Mutation Reveals a Second Binding Mode of the Integrin Alpha2 I Domain to the Gfoger Motif in Collagens.
Plos One, 8, 2013
1TKQ
DownloadVisualize
BU of 1tkq by Molmil
SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE IN THE PRESENCE OF CsCl
分子名称: GRAMICIDIN A, MINI-GRAMICIDIN A, SUCCINIC ACID
著者Xie, X, Al-Momani, L, Bockelmann, D, Griesinger, C, Koert, U.
登録日2004-06-09
公開日2004-07-13
最終更新日2019-09-25
実験手法SOLUTION NMR
主引用文献An Asymmetric Ion Channel Derived from Gramicidin A. Synthesis, Function and NMR Structure.
FEBS J., 272, 2005
4GLC
DownloadVisualize
BU of 4glc by Molmil
DNA dodecamer containing 5-hydroxymethyl-cytosine
分子名称: DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
著者Spingler, B, Renciuk, D, Vorlickova, M.
登録日2012-08-14
公開日2013-08-28
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.831 Å)
主引用文献Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine.
Nucleic Acids Res., 41, 2013
4GM3
DownloadVisualize
BU of 4gm3 by Molmil
Crystal structure of human WD repeat domain 5 with compound MM-101
分子名称: MM-101, WD repeat-containing protein 5
著者Karatas, H, Townsend, E.C, Chen, Y, Bernard, D, Cao, F, Liu, L, Lei, M, Dou, Y, Wang, S.
登録日2012-08-15
公開日2013-07-31
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.393 Å)
主引用文献High-affinity, small-molecule peptidomimetic inhibitors of MLL1/WDR5 protein-protein interaction.
J.Am.Chem.Soc., 135, 2013
4GLS
DownloadVisualize
BU of 4gls by Molmil
Crystal Structure of Chemically Synthesized Heterochiral {D-Protein Antagonist plus VEGF-A} Protein Complex in space group P21
分子名称: D- RFX001, D- Vascular endothelial growth factor-A, DI(HYDROXYETHYL)ETHER, ...
著者Mandal, K, Uppalapati, M, Ault-Riche, D, Kenney, J, Lowitz, J, Sidhu, S, Kent, S.B.H.
登録日2012-08-14
公開日2012-09-05
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Chemical synthesis and X-ray structure of a heterochiral {D-protein antagonist plus vascular endothelial growth factor} protein complex by racemic crystallography.
Proc.Natl.Acad.Sci.USA, 109, 2012
4BK9
DownloadVisualize
BU of 4bk9 by Molmil
Crystal structure of 2-keto-3-deoxy-6-phospho-gluconate aldolase from Zymomonas mobilis ATCC 29191
分子名称: 2-DEHYDRO-3-DEOXYPHOSPHOGLUCONATE ALDOLASE/4-HYDROXY-2-OXO GLUTARATE ALDOLASE, SULFATE ION
著者Classen, T, Schlieper, D, Groth, G, Pietruszka, J.
登録日2013-04-22
公開日2014-04-30
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.77 Å)
主引用文献Crystal Structure of 2-Keto-3-Deoxy-6-Phospho- Gluconate Aldolase from Zymomonas Mobilis
To be Published
4EEK
DownloadVisualize
BU of 4eek by Molmil
Crystal structure of HAD FAMILY HYDROLASE DR_1622 from Deinococcus radiodurans R1 (TARGET EFI-501256) With bound phosphate and sodium
分子名称: Beta-phosphoglucomutase-related protein, PHOSPHATE ION, SODIUM ION
著者Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Gerlt, J.A, Allen, K.N, Dunaway-Mariano, D, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2012-03-28
公開日2012-04-18
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of HAD HYDROLASE DR_1622 Deinococcus radiodurans R1 (TARGET EFI-501256)
To be Published

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon