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PDB: 22600 results

6RAF
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BU of 6raf by Molmil
Heterodimeric ABC exporter TmrAB in inward-facing narrow conformation under turnover conditions
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Anti-vesicular stomatitis virus N VHH, ...
Authors:Thomas, C, Januliene, D, Mehdipour, A.R, Hofmann, S, Hummer, G, Moeller, A, Tampe, R.
Deposit date:2019-04-06
Release date:2019-07-31
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Conformation space of a heterodimeric ABC exporter under turnover conditions.
Nature, 571, 2019
2NTH
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BU of 2nth by Molmil
Structure of Spin-labeled T4 Lysozyme Mutant L118R1
Descriptor: Lysozyme, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
Authors:Guo, Z, Cascio, D, Hideg, K, Hubbell, W.L.
Deposit date:2006-11-07
Release date:2007-06-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural determinants of nitroxide motion in spin-labeled proteins: Tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme.
Protein Sci., 16, 2007
7YDQ
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BU of 7ydq by Molmil
Structure of PfNT1(Y190A)-GFP in complex with GSK4
Descriptor: 5-methyl-N-[2-(2-oxidanylideneazepan-1-yl)ethyl]-2-phenyl-1,3-oxazole-4-carboxamide, Nucleoside transporter 1,Green fluorescent protein
Authors:Wang, C, Yu, L.Y, Li, J.L, Ren, R.B, Deng, D.
Deposit date:2022-07-04
Release date:2023-04-26
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (4.04 Å)
Cite:Structural basis of the substrate recognition and inhibition mechanism of Plasmodium falciparum nucleoside transporter PfENT1.
Nat Commun, 14, 2023
2NY7
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BU of 2ny7 by Molmil
HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ANTIBODY b12, HEAVY CHAIN, ...
Authors:Zhou, T, Xu, L, Dey, B, Hessell, A.J, Van Ryk, D, Xiang, S.H, Yang, X, Zhang, M.Y, Zwick, M.B, Arthos, J, Burton, D.R, Dimitrov, D.S, Sodroski, J, Wyatt, R, Nabel, G.J, Kwong, P.D.
Deposit date:2006-11-20
Release date:2007-02-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural definition of a conserved neutralization epitope on HIV-1 gp120.
Nature, 445, 2007
6QYK
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BU of 6qyk by Molmil
Structure of MBP-Mcl-1 in complex with compound 7a
Descriptor: (2~{R})-2-[6-ethyl-5-(1~{H}-indol-5-yl)thieno[2,3-d]pyrimidin-4-yl]oxypropanoic acid, Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Dokurno, P, Szlavik, Z, Ondi, L, Csekei, M, Paczal, A, Szabo, Z.B, Radics, G, Murray, J, Davidson, J, Chen, I, Davis, B, Hubbard, R.E, Pedder, C, Surgenor, A.E, Smith, J, Robertson, A, LeToumelin-Braizat, G, Cauquil, N, Zarka, M, Demarles, D, Perron-Sierra, F, Geneste, O, Kotschy, A.
Deposit date:2019-03-09
Release date:2019-08-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Guided Discovery of a Selective Mcl-1 Inhibitor with Cellular Activity.
J.Med.Chem., 62, 2019
3KW1
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BU of 3kw1 by Molmil
Structural basis of the activity and substrate specificity of the fluoroacetyl-CoA FlK - Wild type FlK in complex with FAcOPan
Descriptor: 2-({N-[(2S)-2,4-dihydroxy-3,3-dimethylbutanoyl]-beta-alanyl}amino)ethyl fluoroacetate, Fluoroacetyl-CoA thioesterase
Authors:Dias, M.V.B, Huang, F, Chirgadze, D.Y, Tosin, M, Spiteller, D, Valentine, E.F, Leadlay, P.F, Spencer, J.B, Blundell, T.L.
Deposit date:2009-11-30
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for the activity and substrate specificity of fluoroacetyl-CoA thioesterase FlK.
J.Biol.Chem., 285, 2010
6QYY
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BU of 6qyy by Molmil
The crystal structure of head fiber gp8.5 N base in bacteriophage phi29
Descriptor: Capsid fiber protein, SULFATE ION
Authors:Xu, J, Wang, D, Gui, M, Xiang, Y.
Deposit date:2019-03-10
Release date:2019-06-12
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural assembly of the tailed bacteriophage φ29.
Nat Commun, 10, 2019
6QZ6
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BU of 6qz6 by Molmil
Structure of Mcl-1 in complex with compound 8b
Descriptor: (2~{R})-2-[[6-ethyl-5-(1~{H}-indol-4-yl)thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid, Induced myeloid leukemia cell differentiation protein Mcl-1
Authors:Dokurno, P, Szlavik, Z, Ondi, L, Csekei, M, Paczal, A, Szabo, Z.B, Radics, G, Murray, J, Davidson, J, Chen, I, Davis, B, Hubbard, R.E, Pedder, C, Surgenor, A.E, Smith, J, Robertson, A, LeToumelin-Braizat, G, Cauquil, N, Zarka, M, Demarles, D, Perron-Sierra, F, Geneste, O, Kotschy, A.
Deposit date:2019-03-11
Release date:2019-08-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Guided Discovery of a Selective Mcl-1 Inhibitor with Cellular Activity.
J.Med.Chem., 62, 2019
3KZO
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BU of 3kzo by Molmil
Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate and N-acetyl-L-norvaline
Descriptor: GLYCEROL, N-ACETYL-L-NORVALINE, N-acetylornithine carbamoyltransferase, ...
Authors:Shi, D, Yu, X, Allewell, N.M, Tuchman, M.
Deposit date:2009-12-08
Release date:2010-03-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis.
Proteins, 64, 2006
4BOH
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BU of 4boh by Molmil
Madanins (MEROPS I53) are cleaved by thrombin and factor Xa
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, SULFATE ION, ...
Authors:Figueiredo, A.C, deSanctis, D, Pereira, P.J.B.
Deposit date:2013-05-20
Release date:2013-09-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.595 Å)
Cite:The Tick-Derived Anticoagulant Madanin is Processed by Thrombin and Factor Xa.
Plos One, 8, 2013
3KX4
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BU of 3kx4 by Molmil
Crystal structure of Bacillus megaterium BM3 heme domain mutant I401E
Descriptor: Bifunctional P-450/NADPH-P450 reductase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Girvan, H.M, Levy, C.W, Leys, D, Munro, A.W.
Deposit date:2009-12-02
Release date:2010-05-19
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Glutamate-haem ester bond formation is disfavoured in flavocytochrome P450 BM3: characterization of glutamate substitution mutants at the haem site of P450 BM3.
Biochem.J., 427, 2010
6QSL
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BU of 6qsl by Molmil
mTFP* closed conformation: I197C-Y200H-Y204H mutant for enhanced metal binding
Descriptor: GFP-like fluorescent chromoprotein cFP484
Authors:Fischer, J, Renn, D, Arold, T.A, Groll, M.
Deposit date:2019-02-21
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Robust and Versatile Host Protein for the Design and Evaluation of Artificial Metal Centers
Acs Catalysis, 2019
2O18
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BU of 2o18 by Molmil
Crystal structure of a Thiamine biosynthesis lipoprotein apbE, NorthEast Strcutural Genomics target ER559
Descriptor: CALCIUM ION, Thiamine biosynthesis lipoprotein apbE
Authors:Seetharaman, J, Su, M, Wang, D, Fang, Y, Cunningham, K, Ma, L, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-11-28
Release date:2006-12-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a Thiamine biosynthesis lipoprotein apbE
To be Published
8QEX
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BU of 8qex by Molmil
Streptavidin variant with a cobalt catalyst for CH metal-catalyzed hydrogen-atom-transfer (M-HAT)
Descriptor: Streptavidin, cobalt Streptavidin
Authors:Jakob, R.P, Chen, D, Ward, T.R.
Deposit date:2023-09-01
Release date:2024-07-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:An evolved artificial radical cyclase enables the construction of bicyclic terpenoid scaffolds via an H-atom transfer pathway.
Nat.Chem., 16, 2024
3L0K
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BU of 3l0k by Molmil
Human orotidyl-5'-monophosphate decarboxylase in complex with 6-acetyl-UMP
Descriptor: 6-acetyluridine 5'-phosphate, GLYCEROL, Uridine 5'-monophosphate synthase
Authors:Heinrich, D, Diederichsen, U, Rudolph, M.
Deposit date:2009-12-10
Release date:2010-01-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Lys314 is a nucleophile in non-classical reactions of orotidine-5'-monophosphate decarboxylase
Chemistry, 15, 2009
6QXV
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BU of 6qxv by Molmil
Pink beam serial crystallography: Proteinase K, 1 us exposure, 1585 patterns merged (2 chips)
Descriptor: CALCIUM ION, CHLORIDE ION, Proteinase K, ...
Authors:Tolstikova, A, Oberthuer, D, Meents, A.
Deposit date:2019-03-08
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:1 kHz fixed-target serial crystallography using a multilayer monochromator and an integrating pixel detector.
Iucrj, 6, 2019
6QUE
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BU of 6que by Molmil
Structure of ovine transhydrogenase in the presence of NADP+ in a "single face-down" conformation
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Nicotinamide nucleotide transhydrogenase
Authors:Kampjut, D, Sazanov, L.A.
Deposit date:2019-02-27
Release date:2019-08-28
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure and mechanism of mitochondrial proton-translocating transhydrogenase.
Nature, 573, 2019
6QYN
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BU of 6qyn by Molmil
Structure of MBP-Mcl-1 in complex with compound 10d
Descriptor: (2~{R})-2-[5-(3-chloranyl-2-methyl-4-oxidanyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid, Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Dokurno, P, Szlavik, Z, Ondi, L, Csekei, M, Paczal, A, Szabo, Z.B, Radics, G, Murray, J, Davidson, J, Chen, I, Davis, B, Hubbard, R.E, Pedder, C, Surgenor, A.E, Smith, J, Robertson, A, LeToumelin-Braizat, G, Cauquil, N, Zarka, M, Demarles, D, Perron-Sierra, F, Geneste, O, Kotschy, A.
Deposit date:2019-03-09
Release date:2019-08-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Guided Discovery of a Selective Mcl-1 Inhibitor with Cellular Activity.
J.Med.Chem., 62, 2019
3KZC
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BU of 3kzc by Molmil
Crystal structure of N-acetyl-L-ornithine transcarbamylase
Descriptor: N-acetylornithine carbamoyltransferase, SULFATE ION
Authors:Shi, D, Yu, X, Allewell, N.M, Tuchman, M.
Deposit date:2009-12-08
Release date:2010-03-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria.
J.Biol.Chem., 280, 2005
3KZM
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BU of 3kzm by Molmil
Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate
Descriptor: GLYCEROL, N-acetylornithine carbamoyltransferase, PHOSPHORIC ACID MONO(FORMAMIDE)ESTER, ...
Authors:Shi, D, Yu, X, Allewell, N.M, Tuchman, M.
Deposit date:2009-12-08
Release date:2010-03-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis.
Proteins, 64, 2006
6QUX
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BU of 6qux by Molmil
Crystal Structure of KRAS-G12D in Complex with Natural Product-Like Compound 15
Descriptor: (6~{a}~{R},11~{b}~{S})-6~{a}-(1,4-dimethylpiperidin-4-yl)-7,11~{b}-dihydro-6~{H}-indolo[2,3-c]isoquinolin-5-one, 1,2-ETHANEDIOL, GTPase KRas, ...
Authors:Fischer, G, Kessler, D, Muellauer, B, Wolkerstorfer, B.
Deposit date:2019-02-28
Release date:2019-07-31
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:KRAS Binders Hidden in Nature.
Chemistry, 25, 2019
2O6G
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BU of 2o6g by Molmil
Crystal structure of IRF-3 bound to the interferon-b enhancer
Descriptor: Interferon regulatory factor 3, interferon-b enhancer
Authors:Panne, D.
Deposit date:2006-12-07
Release date:2007-07-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:An Atomic Model of the Interferon-beta Enhanceosome.
Cell(Cambridge,Mass.), 129, 2007
8QNO
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BU of 8qno by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase treated at 368 K from Pyrococcus furiosus in complex with inosine
Descriptor: Adenosylhomocysteinase, INOSINE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Saleem-Batcha, R, Koeppl, L.H, Popadic, D, Andexer, J.N.
Deposit date:2023-09-27
Release date:2024-08-21
Method:X-RAY DIFFRACTION (2.033 Å)
Cite:Structure, function and substrate preferences of archaeal S-adenosyl-L-homocysteine hydrolases.
Commun Biol, 7, 2024
4DMW
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BU of 4dmw by Molmil
Crystal structure of the GT domain of Clostridium difficile toxin A (TcdA) in complex with UDP and Manganese
Descriptor: MANGANESE (II) ION, Toxin A, URIDINE-5'-DIPHOSPHATE
Authors:Malito, E, D'Urzo, N, Bottomley, M.J, Biancucci, M, Scarselli, M, Maione, D, Martinelli, M.
Deposit date:2012-02-08
Release date:2012-07-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of Clostridium difficile toxin A glucosyltransferase domain bound to Mn2+ and UDP provides insights into glucosyltransferase activity and product release.
Febs J., 279, 2012
6QMN
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BU of 6qmn by Molmil
Crystal structure of a Ribonuclease A-Onconase chimera
Descriptor: PHOSPHATE ION, Ribonuclease pancreatic
Authors:Esposito, L, Vitagliano, L, Ruggiero, A, Picone, D, Leone, S, Donnarumma, F.
Deposit date:2019-02-07
Release date:2019-05-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structure, stability and aggregation propensity of a Ribonuclease A-Onconase chimera.
Int.J.Biol.Macromol., 133, 2019

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