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PDB: 52974 results

7ZRO
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The spatial structure of amyloidogenic SEM1(68-107) peptide
Descriptor: Semenogelin-1
Authors:Sanchugova, D.A, Blokhin, D.S.
Deposit date:2022-05-04
Release date:2022-06-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The spatial structure of amyloidogenic SEM1(68-107) peptide
To Be Published
1TJP
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BU of 1tjp by Molmil
Crystal Structure Of Wild-Type Tryptophan Synthase Complexed With 1-[(2-hydroxylphenyl)amino]3-glycerolphosphate
Descriptor: 1-[(2-HYDROXYLPHENYL)AMINO]3-GLYCEROLPHOSPHATE, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, ...
Authors:Kulik, V, Hartmann, E, Weyand, M, Frey, M, Gierl, A, Niks, D, Dunn, M.F, Schlichting, I.
Deposit date:2004-06-07
Release date:2005-12-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:On the structural basis of the catalytic mechanism and the regulation of the alpha subunit of tryptophan synthase from Salmonella typhimurium and BX1 from maize, two evolutionarily related enzymes.
J.Mol.Biol., 352, 2005
1TLO
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BU of 1tlo by Molmil
High resolution crystal structure of calpain I protease core in complex with E64
Descriptor: CALCIUM ION, Calpain 1, large [catalytic] subunit, ...
Authors:Moldoveanu, T, Campbell, R.L, Cuerrier, D, Davies, P.L.
Deposit date:2004-06-09
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Calpain-E64 and -Leupeptin Inhibitor Complexes Reveal Mobile Loops Gating the Active Site
J.Mol.Biol., 343, 2004
7T9F
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BU of 7t9f by Molmil
Structure of VcINDY-apo
Descriptor: DASS family sodium-coupled anion symporter
Authors:Sauer, D.B, Marden, J.J, Song, J.M, Wang, D.N.
Deposit date:2021-12-19
Release date:2022-05-25
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Structural basis of ion - substrate coupling in the Na + -dependent dicarboxylate transporter VcINDY.
Nat Commun, 13, 2022
4R6K
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BU of 4r6k by Molmil
Crystal structure of ABC transporter substrate-binding protein YesO from Bacillus subtilis, TARGET EFI-510761, an open conformation
Descriptor: SODIUM ION, SOLUTE-BINDING PROTEIN
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Siedel, R.D, Hillerich, B, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-08-25
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of transporter Yeso from Bacillus subtilis, Target Efi-510761
To be Published
3EQL
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BU of 3eql by Molmil
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic myxopyronin
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Vassylyev, D.G, Vassylyeva, M.N, Artsimovitch, I.
Deposit date:2008-09-30
Release date:2008-10-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Transcription inactivation through local refolding of the RNA polymerase structure.
Nature, 457, 2009
6J2E
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BU of 6j2e by Molmil
Crystal structure of bat (Pteropus Alecto) MHC class I Ptal-N*01:01 in complex with Ebola virus-derived peptide EBOV-NP1
Descriptor: Beta-2-microglobulin, EBOV-NP1, MHC class I antigen
Authors:Lu, D, Liu, K.F, Yue, C, Lu, Q, Cheng, H, Chai, Y, Qi, J.X, Gao, G.F, Liu, W.J.
Deposit date:2019-01-01
Release date:2019-09-18
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Peptide presentation by bat MHC class I provides new insight into the antiviral immunity of bats.
Plos Biol., 17, 2019
1SUW
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BU of 1suw by Molmil
Crystal structure of a NAD kinase from Archaeoglobus fulgidus in complex with its substrate and product: Insights into the catalysis of NAD kinase
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Probable inorganic polyphosphate/ATP-NAD kinase
Authors:Liu, J, Lou, Y, Yokota, H, Adams, P.D, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-03-26
Release date:2004-08-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal Structures of an NAD Kinase from Archaeoglobus fulgidus in Complex with ATP, NAD, or NADP
J.Mol.Biol., 354, 2005
2WGO
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BU of 2wgo by Molmil
Structure of ranaspumin-2, a surfactant protein from the foam nests of a tropical frog
Descriptor: RANASPUMIN-2
Authors:Mackenzie, C.D, Smith, B.O, Kennedy, M.W, Cooper, A.
Deposit date:2009-04-21
Release date:2009-06-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Ranaspumin-2: Structure and Function of a Surfactant Protein from the Foam Nests of a Tropical Frog.
Biophys.J., 96, 2009
8A9O
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BU of 8a9o by Molmil
Structure of the polyamine acetyltransferase DpA
Descriptor: ACETYL COENZYME *A, BROMIDE ION, COENZYME A, ...
Authors:Garcia-Pino, A, Jurenas, D.
Deposit date:2022-06-28
Release date:2023-07-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.587 Å)
Cite:A polyamine acetyltransferase regulates the motility and biofilm formation of Acinetobacter baumannii.
Nat Commun, 14, 2023
8A9N
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Structure of DpA polyamine acetyltransferase in complex with 1,3-DAP
Descriptor: 1,3-DIAMINOPROPANE, Acetyltransferase, COENZYME A, ...
Authors:Garcia-Pino, A, Jurenas, D.
Deposit date:2022-06-28
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.854 Å)
Cite:A polyamine acetyltransferase regulates the motility and biofilm formation of Acinetobacter baumannii.
Nat Commun, 14, 2023
4RJD
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TFP bound in alternate orientations to calcium-saturated Calmodulin C-Domains
Descriptor: 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PROPYL]-2-TRIFLUOROMETHYL-10H-PHENOTHIAZINE, CALCIUM ION, CHLORIDE ION, ...
Authors:Feldkamp, M.D, Gakhar, L, Pandey, N, Shea, M.A.
Deposit date:2014-10-08
Release date:2015-08-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Opposing orientations of the anti-psychotic drug trifluoperazine selected by alternate conformations of M144 in calmodulin.
Proteins, 83, 2015
6J9Q
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BU of 6j9q by Molmil
Crystal structure of Trypanosoma brucei gambiense glycerol kinase complex with AMP-PNP.
Descriptor: GLYCEROL, Glycerol kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Balogun, E.O, Chishima, T, Ichinose, M, Inaoka, D.K, Kido, Y, Ibrahim, B, de Koning, H, McKerrow, J.H, Watanabe, Y, Nozaki, T, Michels, P.A.M, Harada, S, Kita, K, Shiba, T.
Deposit date:2019-01-24
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Reaction mechanism of the reverse reaction of African human trypanosomes glycerol kinase.
To Be Published
1T27
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BU of 1t27 by Molmil
THE STRUCTURE OF PITP COMPLEXED TO PHOSPHATIDYLCHOLINE
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Phosphatidylinositol transfer protein alpha isoform
Authors:Yoder, M.D, Thomas, L.M, Tremblay, J.M, Oliver, R.L, Yarbrough, L.R, Helmkamp Jr, G.M.
Deposit date:2004-04-20
Release date:2004-05-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:STRUCTURE OF A MULTIFUNCTIONAL PROTEIN. MAMMALIAN PHOSPHATIDYLINOSITOL TRANSFER PROTEIN COMPLEXED WITH PHOSPHATIDYLCHOLINE
J.Biol.Chem., 276, 2001
1T3P
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BU of 1t3p by Molmil
Half-sandwich arene ruthenium(II)-enzyme complex
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:McNae, I.W, Fishburne, K, Habtemariam, A, Hunter, T.M, Melchart, M, Wang, F, Walkinshaw, M.D, Sadler, P.J.
Deposit date:2004-04-27
Release date:2005-07-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Half-sandwich arene ruthenium(II)-enzyme complex
CHEM.COMMUN.(CAMB.), 16, 2004
1T5N
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BU of 1t5n by Molmil
Structural transitions as determinants of calcium-dependent antibiotic daptomycin
Descriptor: DAPTOMYCIN, DECANOIC ACID
Authors:Jung, D, Rozek, A, Okon, M, Hancock, R.E.
Deposit date:2004-05-04
Release date:2004-08-31
Last modified:2019-11-06
Method:SOLUTION NMR
Cite:Structural Transitions as Determinants of the Action of the Calcium-Dependent Antibiotic Daptomycin.
Chem.Biol., 11, 2004
3EUL
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BU of 3eul by Molmil
Structure of the signal receiver domain of the putative response regulator NarL from Mycobacterium tuberculosis
Descriptor: CHLORIDE ION, POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN NARL (DNA-binding response regulator, LuxR family)
Authors:Schneider, G, Schnell, R, Agren, D.
Deposit date:2008-10-10
Release date:2008-11-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:1.9 A structure of the signal receiver domain of the putative response regulator NarL from Mycobacterium tuberculosis.
Acta Crystallogr.,Sect.F, 64, 2008
4RKP
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BU of 4rkp by Molmil
Crystal Structure of Mevalonate-3-Kinase from Thermoplasma acidophilum (apo form)
Descriptor: ACETATE ION, Putative uncharacterized protein Ta1305, SULFATE ION
Authors:Vinokur, J.M, Cascio, D, Sawaya, M.R, Bowie, J.U.
Deposit date:2014-10-13
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural analysis of mevalonate-3-kinase provides insight into the mechanisms of isoprenoid pathway decarboxylases.
Protein Sci., 24, 2015
4RKZ
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Crystal Structure of Mevalonate-3-Kinase from Thermoplasma acidophilum (Mevalonate 3-Phosphate/ADP Bound)
Descriptor: (3R)-5-hydroxy-3-methyl-3-(phosphonooxy)pentanoic acid, ADENOSINE-5'-DIPHOSPHATE, Putative uncharacterized protein Ta1305, ...
Authors:Vinokur, J.M, Cascio, D, Sawaya, M.R, Bowie, J.U.
Deposit date:2014-10-14
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural analysis of mevalonate-3-kinase provides insight into the mechanisms of isoprenoid pathway decarboxylases.
Protein Sci., 24, 2015
5KZK
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BU of 5kzk by Molmil
Crystal Structure of rRNA methyltransferase from Sinorhizobium meliloti
Descriptor: COBALT (II) ION, Probable RNA methyltransferase, TrmH family, ...
Authors:Dey, D, Hegde, R.P, Almo, S.C, Ramakumar, S, Ramagopal, U.A, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2016-07-25
Release date:2017-08-02
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Crystal Structure of rRNA methyltransferase from Sinorhizobium meliloti
To Be Published
6J2G
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BU of 6j2g by Molmil
Crystal structure of bat (Pteropus Alecto) MHC class I Ptal-N*01:01 in complex with Ebola virus-derived peptide EBOV-NP2
Descriptor: Beta-2-microglobulin, EBOV-NP2, Ptal-N*01:01
Authors:Lu, D, Liu, K.F, Yue, C, Lu, Q, Cheng, H, Chai, Y, Qi, J.X, Gao, G.F, Liu, W.J.
Deposit date:2019-01-01
Release date:2019-09-18
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Peptide presentation by bat MHC class I provides new insight into the antiviral immunity of bats.
Plos Biol., 17, 2019
5KIK
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BU of 5kik by Molmil
CmlA beta-hydroxylase in chemically reduced diferrous state
Descriptor: CmlA protein, FE (III) ION, GLYCEROL, ...
Authors:Knoot, C.J, Lipscomb, J.D.
Deposit date:2016-06-16
Release date:2017-04-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Carboxylate Shift Regulates Dioxygen Activation by the Diiron Nonheme beta-Hydroxylase CmlA upon Binding of a Substrate-Loaded Nonribosomal Peptide Synthetase.
Biochemistry, 55, 2016
5KTZ
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expanded poliovirus in complex with VHH 12B
Descriptor: Genome polyprotein, VHH 12B, VP1, ...
Authors:Strauss, M, Schotte, L, Filman, D.J, Hogle, J.M.
Deposit date:2016-07-12
Release date:2016-11-02
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cryo-electron Microscopy Structures of Expanded Poliovirus with VHHs Sample the Conformational Repertoire of the Expanded State.
J. Virol., 91, 2017
7T1U
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Crystal structure of a superbinder Src SH2 domain (sSrcF) in complex with a high affinity phosphopeptide
Descriptor: Proto-oncogene tyrosine-protein kinase Src, Synthetic phosphopeptide, ZINC ION
Authors:Martyn, G.D, Singer, A.U, Manczyk, N, Veggiani, G, Kurinov, I, Sicheri, F, Sidhu, S.S.
Deposit date:2021-12-02
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Engineered SH2 Domains for Targeted Phosphoproteomics.
Acs Chem.Biol., 17, 2022
7TGK
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Crystal structure of ATP bound DesD, the desferrioxamine synthetase from the Streptomyces griseoflavus ferrimycin biosynthetic pathway
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Patel, K.D, Gulick, A.M.
Deposit date:2022-01-07
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:An acyl-adenylate mimic reveals the structural basis for substrate recognition by the iterative siderophore synthetase DesD.
J.Biol.Chem., 298, 2022

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