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PDB: 53012 results

8DOI
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BU of 8doi by Molmil
Dehaloperoxidase B in complex with 2,2'-Biphenol
Descriptor: 2-(2-hydroxyphenyl)phenol, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:de Serrano, V.S, Yun, D, Ghiladi, R.
Deposit date:2022-07-13
Release date:2022-11-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Oxidation of bisphenol A (BPA) and related compounds by the multifunctional catalytic globin dehaloperoxidase.
J.Inorg.Biochem., 238, 2023
5NNO
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BU of 5nno by Molmil
Structure of TbALDH3 complexed with NAD and AN3057 aldehyde
Descriptor: 4-[(1-oxidanyl-3~{H}-2,1-benzoxaborol-5-yl)oxy]benzaldehyde, Aldehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Zoltner, M, Zhang, N, Horn, D, Field, M.C.
Deposit date:2017-04-10
Release date:2017-04-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Host-parasite co-metabolic activation of antitrypanosomal aminomethyl-benzoxaboroles.
PLoS Pathog., 14, 2018
7JSJ
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BU of 7jsj by Molmil
Structure of the NaCT-PF2 complex
Descriptor: (2R)-2-[2-(4-tert-butylphenyl)ethyl]-2-hydroxybutanedioic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, ...
Authors:Sauer, D.B, Wang, B, Song, J, Rice, W.J, Wang, D.N.
Deposit date:2020-08-14
Release date:2021-02-24
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Structure and inhibition mechanism of the human citrate transporter NaCT.
Nature, 591, 2021
5DS9
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BU of 5ds9 by Molmil
Crystal structure of Fis bound to 27bp DNA F1-8A (AAATTAGTTTGAATTTTGAGCTAATTT)
Descriptor: DNA (27-MER), DNA-binding protein Fis
Authors:Hancock, S.P, Cascio, D, Johnson, R.C.
Deposit date:2015-09-17
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.561 Å)
Cite:DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis.
Plos One, 11, 2016
5DTE
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BU of 5dte by Molmil
Crystal Structure of an ABC transporter periplasmic solute binding protein (IPR025997) from Actinobacillus succinogenes 130z(Asuc_0081, TARGET EFI-511065) with bound D-allose
Descriptor: Monosaccharide-transporting ATPase, beta-D-allopyranose
Authors:Yadava, U, Vetting, M.W, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Koss, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2015-09-18
Release date:2015-10-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of an ABC transporter periplasmic solute binding protein (IPR025997) from Actinobacillus succinogenes 130z(Asuc_0081, TARGET EFI-511065) with bound D-allose
To be published
5KNK
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BU of 5knk by Molmil
Lipid A secondary acyltransferase LpxM from Acinetobacter baumannii with catalytic residue substitution (E127A)
Descriptor: DODECYL-BETA-D-MALTOSIDE, GLYCEROL, Lipid A biosynthesis lauroyl acyltransferase, ...
Authors:Dovala, D.L, Hu, Q, Metzger IV, L.E.
Deposit date:2016-06-28
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-guided enzymology of the lipid A acyltransferase LpxM reveals a dual activity mechanism.
Proc.Natl.Acad.Sci.USA, 113, 2016
6GBY
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BU of 6gby by Molmil
Copper nitrite reductase from Achromobacter cycloclastes: non-polymorph separated dataset 1
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
Authors:Ebrahim, A, Appleby, M.V, Axford, D, Beale, J, Moreno-Chicano, T, Sherrell, D.A, Strange, R.W, Owen, R.L, Hough, M.A.
Deposit date:2018-04-16
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Resolving polymorphs and radiation-driven effects in microcrystals using fixed-target serial synchrotron crystallography.
Acta Crystallogr D Struct Biol, 75, 2019
5CWU
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BU of 5cwu by Molmil
Crystal structure of Chaetomium thermophilum Nup188 TAIL domain
Descriptor: GLYCEROL, Nucleoporin NUP188
Authors:Stuwe, T, Bley, C.J, Thierbach, K, Petrovic, S, Schilbach, S, Mayo, D.J, Perriches, T, Rundlet, E.J, Jeon, Y.E, Collins, L.N, Lin, D.H, Paduch, M, Koide, A, Lu, V, Fischer, J, Hurt, E, Koide, S, Kossiakoff, A.A, Hoelz, A.
Deposit date:2015-07-28
Release date:2015-09-16
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Architecture of the fungal nuclear pore inner ring complex.
Science, 350, 2015
6GBB
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BU of 6gbb by Molmil
Copper nitrite reductase from Achromobacter cycloclastes: large cell polymorph dataset 1
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
Authors:Ebrahim, A, Appleby, M.V, Axford, D, Beale, J, Moreno-Chicano, T, Sherrell, D.A, Strange, R.W, Owen, R.L, Hough, M.A.
Deposit date:2018-04-13
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Resolving polymorphs and radiation-driven effects in microcrystals using fixed-target serial synchrotron crystallography.
Acta Crystallogr D Struct Biol, 75, 2019
5NRW
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BU of 5nrw by Molmil
Crystal structure of the human bromodomain of CREBBP bound to the inhibitor XDM4
Descriptor: 1,2-ETHANEDIOL, 4-ethanoyl-3-ethyl-5-methyl-~{N}-(naphthalen-1-ylmethyl)-1~{H}-pyrrole-2-carboxamide, CREB-binding protein
Authors:Huegle, M, Wohlwend, D.
Deposit date:2017-04-25
Release date:2017-08-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Beyond the BET Family: Targeting CBP/p300 with 4-Acyl Pyrroles.
Angew. Chem. Int. Ed. Engl., 56, 2017
8V9M
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BU of 8v9m by Molmil
Human Ornithine Aminotransferase cocrystallized with its inhibitor, (R)-3-amino-5,5-difluorocyclohex-1-ene-1-carboxylic acid.
Descriptor: 3-fluoro-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]benzoic acid, GLYCEROL, Ornithine aminotransferase, ...
Authors:Vargas, A.L, Devitt, A, Kaley, N, Silverman, R, Liu, D.
Deposit date:2023-12-08
Release date:2024-05-08
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Design, Synthesis, and Mechanistic Studies of ( R )-3-Amino-5,5-difluorocyclohex-1-ene-1-carboxylic Acid as an Inactivator of Human Ornithine Aminotransferase.
Acs Chem.Biol., 19, 2024
3JRD
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BU of 3jrd by Molmil
Crystal structure of Fis bound to 27 bp DNA F25 containing T2A3 sequence at center
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
7OKN
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BU of 7okn by Molmil
Structure of the outer-membrane core complex (inner ring) from a conjugative type IV secretion system
Descriptor: TraB, Type IV conjugative transfer system lipoprotein TraV
Authors:Amin, H, Ilangovan, A, Costa, T.R.D.
Deposit date:2021-05-18
Release date:2021-12-01
Last modified:2021-12-08
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Architecture of the outer-membrane core complex from a conjugative type IV secretion system.
Nat Commun, 12, 2021
5N8I
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BU of 5n8i by Molmil
Serial Cu nitrite reductase structures at elevated cryogenic temperature, 100K reference dataset.
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, MALONATE ION
Authors:Horrell, S, Kekilli, D, Hough, M, Strange, R.
Deposit date:2017-02-23
Release date:2017-07-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Active-site protein dynamics and solvent accessibility in native Achromobacter cycloclastes copper nitrite reductase.
IUCrJ, 4, 2017
8JCC
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BU of 8jcc by Molmil
Human histone H2B variant H2BFWT Cryo-EM structure with 601 DNA sequence
Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type W-T, ...
Authors:Ding, D.B, Ishibashi, T.
Deposit date:2023-05-10
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Human histone H2B variant H2BFWT Cryo-EM structure with 601 DNA sequence
To Be Published
6WE6
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BU of 6we6 by Molmil
Camphor bound P450cam D251E structure
Descriptor: CAMPHOR, Camphor 5-monooxygenase, POTASSIUM ION, ...
Authors:Amaya, J.A, Poulos, T.L, Batabyal, D.
Deposit date:2020-04-01
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Proton Relay Network in the Bacterial P450s: CYP101A1 and CYP101D1.
Biochemistry, 59, 2020
7OZD
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BU of 7ozd by Molmil
FGFR1 kinase domain (residues 458-765) with mutations C488A, C584S in complex with 34.
Descriptor: 1,2-ETHANEDIOL, Fibroblast growth factor receptor 1, N-[6-(4-hydroxyphenyl)-1H-indazol-3-yl]benzamide, ...
Authors:Trinh, C.H, Turner, L.D, Fishwick, C.W.G.
Deposit date:2021-06-27
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:From Fragment to Lead: De Novo Design and Development toward a Selective FGFR2 Inhibitor.
J.Med.Chem., 65, 2022
7OZB
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BU of 7ozb by Molmil
FGFR1 kinase domain (residues 458-765) with mutations C488A, C584S in complex with 38.
Descriptor: 1,2-ETHANEDIOL, 4-[3-(4-piperazin-4-ium-1-ylphenyl)-1H-indazol-6-yl]phenol, Fibroblast growth factor receptor 1, ...
Authors:Trinh, C.H, Turner, L.D, Fishwick, C.W.G.
Deposit date:2021-06-27
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:From Fragment to Lead: De Novo Design and Development toward a Selective FGFR2 Inhibitor.
J.Med.Chem., 65, 2022
5D92
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BU of 5d92 by Molmil
Structure of a phosphatidylinositolphosphate (PIP) synthase from Renibacterium Salmoninarum
Descriptor: 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, AF2299 protein,Phosphatidylinositol synthase, MAGNESIUM ION, ...
Authors:Clarke, O.B, Tomasek, D.T, Jorge, C.D, Belcher Dufrisne, M, Kim, M, Banerjee, S, Rajashankar, K.R, Hendrickson, W.A, Santos, H, Mancia, F.
Deposit date:2015-08-18
Release date:2015-11-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.62 Å)
Cite:Structural basis for phosphatidylinositol-phosphate biosynthesis.
Nat Commun, 6, 2015
5KRT
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BU of 5krt by Molmil
HIV-1 Integrase Catalytic Core Domain (CCD) in Complex with a Fragment-Derived Allosteric Inhibitor
Descriptor: 3-[2,5-bis(chloranyl)pyrrol-1-yl]thiophene-2-carboxylic acid, Integrase
Authors:Patel, D, Bauman, J.D, Arnold, E.
Deposit date:2016-07-07
Release date:2016-09-28
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:A New Class of Allosteric HIV-1 Integrase Inhibitors Identified by Crystallographic Fragment Screening of the Catalytic Core Domain.
J.Biol.Chem., 291, 2016
5NBU
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BU of 5nbu by Molmil
Crystal structure of native alpha-1-antitrypsin with seven stabilising mutations
Descriptor: Alpha-1-antitrypsin, GLYCEROL, OXAMIC ACID
Authors:Huntington, J.A, Pomowski, A, Johnson, D.J.D.
Deposit date:2017-03-02
Release date:2018-03-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:CRYSTAL STRUCTURE OF THE Z VARIANT OF ALPHA-1-ANTITRYPSIN REVEALS STRUCTURAL AND DYNAMICAL CHANGES AND SUPPORTS A C-TERMINAL DOMAIN SWAP MECHANISM OF POLYMERIZATION
To Be Published
7OZF
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BU of 7ozf by Molmil
FGFR1 kinase domain (residues 458-765) with mutations C488A, C584S in complex with 19.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Fibroblast growth factor receptor 1, ...
Authors:Trinh, C.H, Turner, L.D, Fishwick, C.W.G.
Deposit date:2021-06-28
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:From Fragment to Lead: De Novo Design and Development toward a Selective FGFR2 Inhibitor.
J.Med.Chem., 65, 2022
7OZY
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BU of 7ozy by Molmil
FGFR2 kinase domain (residues 461-763) in complex with 38.
Descriptor: 1,2-ETHANEDIOL, 4-[3-(4-piperazin-4-ium-1-ylphenyl)-1H-indazol-6-yl]phenol, Fibroblast growth factor receptor 2, ...
Authors:Trinh, C.H, Turner, L.D, Fishwick, C.W.G.
Deposit date:2021-06-29
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:From Fragment to Lead: De Novo Design and Development toward a Selective FGFR2 Inhibitor.
J.Med.Chem., 65, 2022
7ZPQ
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BU of 7zpq by Molmil
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Best, K.M, Ikeuchi, K, Kater, L, Best, D.M, Musial, J, Matsuo, Y, Berninghausen, O, Becker, T, Inada, T, Beckmann, R.
Deposit date:2022-04-28
Release date:2023-02-22
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Structural basis for clearing of ribosome collisions by the RQT complex.
Nat Commun, 14, 2023
5E3N
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BU of 5e3n by Molmil
Crystal structure of Fis bound to 27bp DNA F31 (AAATTTGTAGGAATTTTCTGCAAATTT)
Descriptor: DNA (27-MER), DNA-binding protein Fis
Authors:Hancock, S.P, Cascio, D, Johnson, R.C.
Deposit date:2015-10-03
Release date:2016-03-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis.
Plos One, 11, 2016

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數據於2024-07-31公開中

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