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PDB: 52974 results

4RG5
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Crystal Structure of S. Pombe SMN YG-Dimer
Descriptor: MALONATE ION, Maltose-binding periplasmic protein, Survival Motor Neuron protein chimera, ...
Authors:Gupta, K, Martin, R.S, Sarachan, K.L, Sharp, B, Van Duyne, G.D.
Deposit date:2014-09-29
Release date:2015-07-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Oligomeric Properties of Survival Motor NeuronGemin2 Complexes.
J.Biol.Chem., 290, 2015
4UYS
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BU of 4uys by Molmil
X-ray structure of the N-terminal domain of the flocculin Flo11 from Saccharomyces cerevisiae
Descriptor: FLOCCULATION PROTEIN FLO11, MAGNESIUM ION, SODIUM ION
Authors:Kraushaar, T, Veelders, M, Brueckner, S, Rhinow, D, Moesch, H.U, Essen, L.O.
Deposit date:2014-09-03
Release date:2015-08-12
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Interactions by the Fungal Flo11 Adhesin Depend on a Fibronectin Type III-Like Adhesin Domain Girdled by Aromatic Bands.
Structure, 23, 2015
2J3H
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BU of 2j3h by Molmil
Crystal structure of Arabidopsis thaliana Double Bond Reductase (AT5G16970)-Apo form
Descriptor: NADP-DEPENDENT OXIDOREDUCTASE P1
Authors:Youn, B, Kim, S.J, Moinuddin, S.G, Lee, C, Bedgar, D.L, Harper, A.R, Davin, L.B, Lewis, N.G, Kang, C.
Deposit date:2006-08-21
Release date:2006-10-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanistic and Structural Studies of Apoform, Binary, and Ternary Complexes of the Arabidopsis Alkenal Double Bond Reductase at5G16970.
J.Biol.Chem., 281, 2006
6PSC
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BU of 6psc by Molmil
Antibody scFv-M204 trimeric state
Descriptor: scFv-M204 antibody
Authors:Abskharon, R, Sawaya, M.R, Seidler, P.M, Cascio, D, Eisenberg, D.S.
Deposit date:2019-07-12
Release date:2020-06-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of a conformational antibody that binds tau oligomers and inhibits pathological seeding by extracts from donors with Alzheimer's disease.
J.Biol.Chem., 295, 2020
7ZPW
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BU of 7zpw by Molmil
Crystal structure of Pizza6-TSK-TSH with Silicotungstic Acid (STA) polyoxometalate
Descriptor: Keggin (STA), Pizza6-TSK-TSH
Authors:Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D.
Deposit date:2022-04-29
Release date:2023-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mutational study of a symmetry matched protein-polyoxometalate interface.
To be published
4V4X
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BU of 4v4x by Molmil
Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Descriptor: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Jenner, L, Yusupova, G, Rees, B, Moras, D, Yusupov, M.
Deposit date:2006-06-27
Release date:2014-07-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (5 Å)
Cite:Structural basis for messenger RNA movement on the ribosome.
Nature, 444, 2006
1SZX
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BU of 1szx by Molmil
Role Of Hydrogen Bonding In The Active Site Of Human Manganese Superoxide Dismutase
Descriptor: MANGANESE (II) ION, Superoxide dismutase [Mn], mitochondrial
Authors:Greenleaf, W.B, Perry, J.J, Hearn, A.S, Cabelli, D.E, Lepock, J.R, Stroupe, M.E, Tainer, J.A, Nick, H.S, Silverman, D.N.
Deposit date:2004-04-06
Release date:2004-04-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Role of hydrogen bonding in the active site of human manganese superoxide dismutase.
Biochemistry, 43, 2004
5CWB
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BU of 5cwb by Molmil
Crystal structure of de novo designed helical repeat protein DHR4
Descriptor: Designed helical repeat protein
Authors:Bhabha, G, Ekiert, D.C.
Deposit date:2015-07-27
Release date:2015-12-16
Last modified:2016-01-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Exploring the repeat protein universe through computational protein design.
Nature, 528, 2015
5CWK
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BU of 5cwk by Molmil
Crystal structure of de novo designed helical repeat protein DHR53
Descriptor: Designed helical repeat protein
Authors:Bhabha, G, Ekiert, D.C.
Deposit date:2015-07-28
Release date:2015-12-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Exploring the repeat protein universe through computational protein design.
Nature, 528, 2015
6PXF
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BU of 6pxf by Molmil
Structure of human Cathepsin K with an ectosteric inhibitor at 1.85 Angstrom resolution
Descriptor: 1,6,6-trimethyl-10,11-dioxo-6,7,8,9,10,11-hexahydrophenanthro[1,2-b]furan-2-sulfonic acid, Cathepsin K
Authors:Law, S, Aguda, A.H, Nguyen, N.T, Brayer, G.D, Bromme, D.
Deposit date:2019-07-25
Release date:2020-07-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of human Cathepsin K with an ectosteric inhibitor at 1.85 Angstrom resolution
To Be Published
5D1C
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BU of 5d1c by Molmil
Crystal structure of D233G-Y306F HDAC8 in complex with a tetrapeptide substrate
Descriptor: GLYCEROL, HDAC8 Fluor de Lys tetrapeptide substrate, Histone deacetylase 8, ...
Authors:Decroos, C, Christianson, N.H, Gullett, L.E, Bowman, C.M, Christianson, K.E, Deardorff, M.A, Christianson, D.W.
Deposit date:2015-08-04
Release date:2015-10-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.422 Å)
Cite:Biochemical and Structural Characterization of HDAC8 Mutants Associated with Cornelia de Lange Syndrome Spectrum Disorders.
Biochemistry, 54, 2015
7B72
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BU of 7b72 by Molmil
DNA duplex with phosphoryl guanidine moiety, Rp-diastereomer
Descriptor: DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(RGT)P*G)-3')
Authors:Lomzov, A.A, Pyshnyi, D.V, Shernuykov, A.V, Apukhtina, V.S.
Deposit date:2020-12-09
Release date:2021-01-13
Last modified:2023-08-23
Method:SOLUTION NMR
Cite:DNA duplex with phosphoryl guanidine moiety, Rp-diastereomer
To Be Published
6JBR
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BU of 6jbr by Molmil
Tps1/UDP/T6P complex
Descriptor: 6-O-phosphono-alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose, Trehalose-6-phosphate synthase, URIDINE-5'-DIPHOSPHATE
Authors:Wang, S, Zhao, Y, Wang, D, Liu, J.
Deposit date:2019-01-26
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structures of Magnaporthe oryzae trehalose-6-phosphate synthase (MoTps1) suggest a model for catalytic process of Tps1.
Biochem.J., 476, 2019
3ER8
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BU of 3er8 by Molmil
Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with two fragments of RNA
Descriptor: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase, Poly(A) polymerase catalytic subunit, RNA/DNA chimera 5'-D(CP*CP*)R(UP*UP*)D(C)-3', ...
Authors:Li, C, Li, H, Zhou, S, Poulos, T.L, Gershon, P.D.
Deposit date:2008-10-01
Release date:2009-06-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Polymerase Translocation with Respect to Single-Stranded Nucleic Acid: Looping or Wrapping of Primer around a Poly(A) Polymerase
Structure, 17, 2009
6WAK
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BU of 6wak by Molmil
A crystal structure of EGFR(T790M/V948R) in complex with LN3754
Descriptor: Epidermal growth factor receptor, MAGNESIUM ION, N-(3-{5-[2-(acetylamino)pyridin-4-yl]-2-(methylsulfanyl)-1H-imidazol-4-yl}phenyl)-2-[(1-oxo-1,3-dihydro-2H-isoindol-2-yl)methyl]benzamide, ...
Authors:Heppner, D.E, Eck, M.J.
Deposit date:2020-03-25
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Design of a "Two-in-One" Mutant-Selective Epidermal Growth Factor Receptor Inhibitor That Spans the Orthosteric and Allosteric Sites.
J.Med.Chem., 65, 2022
8A1G
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BU of 8a1g by Molmil
Structure of the SNX1-SNX5 complex
Descriptor: N-PROPANOL, Sorting nexin-1, Sorting nexin-5
Authors:Lopez-Robles, C, Scaramuzza, S, Astorga-Simon, E.N, Banos-Mateos, S, Vidaurrazaga, A, Rojas, A.L, Castano, D, Hierro, A.
Deposit date:2022-06-01
Release date:2023-06-14
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Architecture of the ESCPE-1 membrane coat.
Nat.Struct.Mol.Biol., 30, 2023
1TC6
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BU of 1tc6 by Molmil
Ligand Induced Conformational Shift in the N-terminal Domain of GRP94, Open Conformation ADP-Complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Endoplasmin, MAGNESIUM ION, ...
Authors:Gewirth, D.T, Immormino, R.M, Dollins, D.E, Shaffer, P.L, Walker, M.A, Soldano, K.L.
Deposit date:2004-05-20
Release date:2004-08-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Ligand-induced Conformational Shift in the N-terminal Domain of GRP94, an Hsp90 Chaperone.
J.Biol.Chem., 279, 2004
5KVG
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BU of 5kvg by Molmil
Zika specific antibody, ZV-67, bound to ZIKA envelope DIII
Descriptor: CHLORIDE ION, ZIKA Envelope DIII, ZV-67 Antibody Fab Heavy Chain, ...
Authors:Zhao, H, Nelson, C.A, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-07-14
Release date:2016-08-03
Last modified:2016-08-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Basis of Zika Virus-Specific Antibody Protection.
Cell, 166, 2016
5D93
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BU of 5d93 by Molmil
Oxidoreductase Fragment of Mouse QSOX1 in Complex with a FAb Fragment from a Mouse QSOX1-Specific Antibody
Descriptor: Heavy Chain of Fab Fragment from a Mouse QSOX1-Specific Antibody, Light Chain of Fab Fragment from a Mouse QSOX1-Specific Antibody, Sulfhydryl oxidase 1
Authors:Grossman, I, Fass, D.
Deposit date:2015-08-18
Release date:2016-02-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Overcoming a species-specificity barrier in development of an inhibitory antibody targeting a modulator of tumor stroma.
Protein Eng.Des.Sel., 29, 2016
6WBS
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BU of 6wbs by Molmil
Human CFTR first nucleotide binding domain with dF508/V510D
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cystic fibrosis transmembrane conductance regulator, MAGNESIUM ION
Authors:Simon, K.S, Kothe, M, Hilbert, B, Batchelor, J.D, Hurlbut, G.D.
Deposit date:2020-03-27
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.857 Å)
Cite:Determining the Molecular Mechanism of Suppressor Mutation V510D and the Contribution of Helical Unraveling to the dF508-CFTR Defect
To Be Published
8A1R
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BU of 8a1r by Molmil
cryo-EM structure of thioredoxin glutathione reductase in complex with a non-competitive inhibitor
Descriptor: (2~{R},3~{R},4~{S},5~{R})-2-[3-[[[(1~{R},2~{R},3~{R},5~{S})-2,6,6-trimethyl-3-bicyclo[3.1.1]heptanyl]amino]methyl]indol-1-yl]oxane-3,4,5-triol, FLAVIN-ADENINE DINUCLEOTIDE, Thioredoxin glutathione reductase
Authors:Ardini, M, Angelucci, F, Fata, F, Gabriele, F, Effantin, G, Ling, W, Williams, D.L, Petukhova, V.Z, Petukhov, P.A.
Deposit date:2022-06-01
Release date:2023-06-14
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Non-covalent inhibitors of thioredoxin glutathione reductase with schistosomicidal activity in vivo.
Nat Commun, 14, 2023
2ICS
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BU of 2ics by Molmil
Crystal structure of an adenine deaminase
Descriptor: ADENINE, Adenine Deaminase, ZINC ION
Authors:Sugadev, R, Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-09-13
Release date:2006-10-17
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of an adenine deaminase
TO BE PUBLISHED
1JST
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BU of 1jst by Molmil
PHOSPHORYLATED CYCLIN-DEPENDENT KINASE-2 BOUND TO CYCLIN A
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CYCLIN A, CYCLIN-DEPENDENT KINASE-2, ...
Authors:Russo, A.A, Jeffrey, P.D, Pavletich, N.P.
Deposit date:1996-07-03
Release date:1997-01-11
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of cyclin-dependent kinase activation by phosphorylation.
Nat.Struct.Biol., 3, 1996
3ER3
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BU of 3er3 by Molmil
The active site of aspartic proteinases
Descriptor: 6-ammonio-N-[(2R,4R,5R)-5-{[N-(tert-butoxycarbonyl)-L-phenylalanyl-3-(1H-imidazol-3-ium-4-yl)-L-alanyl]amino}-6-cyclohexyl-4-hydroxy-2-(2-methylpropyl)hexanoyl]-L-norleucylphenylalanine, ENDOTHIAPEPSIN
Authors:Al-Karadaghi, S, Cooper, J.B, Veerapandian, B, Hoover, D, Blundell, T.L.
Deposit date:1991-01-02
Release date:1991-04-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Active Site of Aspartic Proteinases
FEBS Lett., 174, 1984
1K4Z
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BU of 1k4z by Molmil
C-terminal Domain of Cyclase Associated Protein
Descriptor: Adenylyl Cyclase-Associated Protein
Authors:Rozwarski, D.A, Fedorov, A.A, Dodatko, T, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-10-09
Release date:2002-03-13
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the actin binding domain of the cyclase-associated protein
Biochemistry, 43, 2004

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