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PDB: 53012 results

8CTW
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BU of 8ctw by Molmil
Crystal structure of a K+ selective NaK mutant (NaK2K) -Na+,Tl+ complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Potassium channel protein, SODIUM ION, ...
Authors:Lee, B, White, K.I, Socolich, M.A, Klureza, M.A, Henning, R, Srajer, V, Ranganathan, R, Hekstra, D.
Deposit date:2022-05-16
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Direct visualization of electric field-stimulated ion conduction in a potassium channel
To Be Published
8SPK
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BU of 8spk by Molmil
Crystal structure of Antarctic PET-degrading enzyme
Descriptor: Lipase 1, MALONATE ION
Authors:Furtado, A.A, Blazquez-Sanchez, P, Grinen, A, Vargas, J.A, Leonardo, D.A, Sculaccio, S.A, Pereira, H.M, Diez, B, Garratt, R.C, Ramirez-Sarmiento, C.A.
Deposit date:2023-05-03
Release date:2023-08-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Engineering the catalytic activity of an Antarctic PET-degrading enzyme by loop exchange.
Protein Sci., 32, 2023
5NDD
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BU of 5ndd by Molmil
Crystal structure of a thermostabilised human protease-activated receptor-2 (PAR2) in complex with AZ8838 at 2.8 angstrom resolution
Descriptor: (~{S})-(4-fluoranyl-2-propyl-phenyl)-(1~{H}-imidazol-2-yl)methanol, Lysozyme,Proteinase-activated receptor 2,Soluble cytochrome b562,Proteinase-activated receptor 2, PHOSPHATE ION, ...
Authors:Cheng, R.K.Y, Fiez-Vandal, C, Schlenker, O, Edman, K, Aggeler, B, Brown, D.G, Brown, G, Cooke, R.M, Dumelin, C.E, Dore, A.S, Geschwindner, S, Grebner, C, Hermansson, N.-O, Jazayeri, A, Johansson, P, Leong, L, Prihandoko, R, Rappas, M, Soutter, H, Snijder, A, Sundstrom, L, Tehan, B, Thornton, P, Troast, D, Wiggin, G, Zhukov, A, Marshall, F.H, Dekker, N.
Deposit date:2017-03-08
Release date:2017-05-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structural insight into allosteric modulation of protease-activated receptor 2.
Nature, 545, 2017
8CTT
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BU of 8ctt by Molmil
Crystal structure of a K+ selective NaK mutant (NaK2K) at 100K
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, POTASSIUM ION, Potassium channel protein
Authors:Lee, B, White, K.I, Socolich, M.A, Klureza, M.A, Henning, R, Srajer, V, Ranganathan, R, Hekstra, D.
Deposit date:2022-05-16
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Direct visualization of electric field-stimulated ion conduction in a potassium channel
To Be Published
8D52
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BU of 8d52 by Molmil
Parathyroid hormone 1 receptor extracellular domain complexed with a peptide ligand containing (2-naphthyl)-beta-3-homoalanine
Descriptor: 1,2-ETHANEDIOL, PTHrP[1-36], Parathyroid hormone/parathyroid hormone-related peptide receptor, ...
Authors:Yu, Z, Kreitler, D.F, Gellman, S.H.
Deposit date:2022-06-03
Release date:2023-06-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Harnessing Aromatic-Histidine Interactions through Synergistic Backbone Extension and Side Chain Modification.
Angew.Chem.Int.Ed.Engl., 62, 2023
8CTX
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BU of 8ctx by Molmil
Crystal structure of a K+ selective NaK mutant (NaK2K) -K+,Tl+ complex
Descriptor: POTASSIUM ION, Potassium channel protein, THALLIUM (I) ION
Authors:Lee, B, White, K.I, Socolich, M.A, Klureza, M.A, Henning, R, Srajer, V, Ranganathan, R, Hekstra, D.
Deposit date:2022-05-16
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Direct visualization of electric field-stimulated ion conduction in a potassium channel
To Be Published
8DA1
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BU of 8da1 by Molmil
Crystal structure of Krait alpha-neurotoxin in complex with Centi-3FTX-D09 antibody
Descriptor: Alpha-bungarotoxin, Centi-3FTX-D09 Fab heavy chain, Centi-3FTX-D09 Fab light chain
Authors:Pletnev, S, Verardi, R, Tully, E.S, Glanville, J, Kwong, P.D.
Deposit date:2022-06-12
Release date:2023-06-14
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Venom protection by antibody from a snakebite hyperimmune subject
To Be Published
8D51
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BU of 8d51 by Molmil
Parathyroid hormone 1 receptor extracellular domain complexed with a peptide ligand containing beta-3-homotryptophan
Descriptor: 1,2-ETHANEDIOL, PTHrP[1-36], Parathyroid hormone/parathyroid hormone-related peptide receptor, ...
Authors:Yu, Z, Kreitler, D.F, Gellman, S.H.
Deposit date:2022-06-03
Release date:2023-06-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Harnessing Aromatic-Histidine Interactions through Synergistic Backbone Extension and Side Chain Modification.
Angew.Chem.Int.Ed.Engl., 62, 2023
6W8U
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BU of 6w8u by Molmil
Cryo-EM of the Pyrobaculum arsenaticum pilus
Descriptor: pilin
Authors:Wang, F, Baquero, D.P, Su, Z, Beltran, L.C, Prangishvili, D, Krupovic, M, Egelman, E.H.
Deposit date:2020-03-21
Release date:2020-07-08
Last modified:2021-10-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The structures of two archaeal type IV pili illuminate evolutionary relationships.
Nat Commun, 11, 2020
6Q8V
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BU of 6q8v by Molmil
Structure of the standard kink turn HmKt-7 variant A2bm6A.
Descriptor: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-12-16
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol., 16, 2019
6CX5
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BU of 6cx5 by Molmil
Structure of alpha-GSA[8,8P] bound by CD1d and in complex with the Va14Vb8.2 TCR
Descriptor: (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(8-phenyloctyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide (non-preferred name), 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wang, J, Zajonc, D.
Deposit date:2018-04-02
Release date:2019-04-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides.
J.Biol.Chem., 294, 2019
8CTV
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BU of 8ctv by Molmil
Crystal structure of a K+ selective NaK mutant (NaK2K) -Tl+ complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Potassium channel protein, SODIUM ION, ...
Authors:Lee, B, White, K.I, Socolich, M.A, Klureza, M.A, Henning, R, Srajer, V, Ranganathan, R, Hekstra, D.
Deposit date:2022-05-16
Release date:2023-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Direct visualization of electric field-stimulated ion conduction in a potassium channel
To Be Published
4YUA
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BU of 4yua by Molmil
Glycogen phosphorylase in complex with ellagic acid
Descriptor: 2,3,7,8-tetrahydroxychromeno[5,4,3-cde]chromene-5,10-dione, Glycogen phosphorylase, muscle form, ...
Authors:Kyriakis, E, Kantsadi, L.A, Stravodimos, A.G, Chatzileontiadou, S.M.D, Leonidas, D.D.
Deposit date:2015-03-18
Release date:2015-05-13
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Natural flavonoids as antidiabetic agents. The binding of gallic and ellagic acids to glycogen phosphorylase b.
Febs Lett., 589, 2015
5KNU
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BU of 5knu by Molmil
Crystal structure of E. coli hypoxanthine phosphoribosyltransferase in complexed with 9-[N,N-(Bis-3-phosphonopropyl)aminomethyl]-9-deazahypoxanthine
Descriptor: 3-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)methyl-(3-phosphonopropyl)amino]propylphosphonic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Hypoxanthine-guanine phosphoribosyltransferase, ...
Authors:Eng, W.S, Keough, D.T, Baszczynski, O, Hockova, D, Janeba, Z.
Deposit date:2016-06-28
Release date:2017-07-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.808 Å)
Cite:Crystal Structures of Acyclic Nucleoside Phosphonates in Complex with Escherichia coli Hypoxanthine Phosphoribosyltransferase
Chemistryselect, 1, 2016
7BAS
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BU of 7bas by Molmil
A de novo pentameric coiled-coil assembly: CC-Type2-(TgLaId)4-W19BrPhe.
Descriptor: CC-Type2-(TgLaId)4-W19BrPhe.
Authors:Martin, F.J.O, Dawson, W.M, Shelley, K, Brady, R.L, Woolfson, D.N.
Deposit date:2020-12-16
Release date:2021-04-28
Last modified:2021-11-17
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states.
Chem Sci, 12, 2021
7BAU
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BU of 7bau by Molmil
A de novo pentameric coiled-coil assembly: CC-Type2-(TgIaId)4-W19BrPhe.
Descriptor: CC-Type2-(TgLaId)4-W19BrPhe.
Authors:Martin, F.J.O, Dawson, W.M, Shelley, K, Brady, R.L, Woolfson, D.N.
Deposit date:2020-12-16
Release date:2021-04-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states.
Chem Sci, 12, 2021
7BAV
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BU of 7bav by Molmil
A de novo pentameric coiled-coil assembly: CC-Type2-(TgLaId)4-W19BrPhe.
Descriptor: CC-Type2-(TgLaId)4-W19BrPhe
Authors:Martin, F.J.O, Dawson, W.M, Shelley, K, Brady, R.L, Woolfson, D.N.
Deposit date:2020-12-16
Release date:2021-04-28
Last modified:2021-11-17
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states.
Chem Sci, 12, 2021
7BAW
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BU of 7baw by Molmil
A heptameric barrel state of a de novo coiled-coil assembly: CC-Type2-(GgIaId)4
Descriptor: CC-Type2-(GgIaId)4, GLYCEROL, N-PROPANOL
Authors:Martin, F.J.O, Dawson, W.M, Brady, R.L, Woolfson, D.N.
Deposit date:2020-12-16
Release date:2021-04-28
Last modified:2021-11-17
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states.
Chem Sci, 12, 2021
6VNQ
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BU of 6vnq by Molmil
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with Bishydroxamic Acid Based Inhibitor
Descriptor: 1,2-ETHANEDIOL, N-hydroxy-1-{[4-(hydroxycarbamoyl)phenyl]methyl}-1H-indole-6-carboxamide, PHOSPHATE ION, ...
Authors:Herbst-Gervasoni, C.J, Christianson, D.W.
Deposit date:2020-01-29
Release date:2020-05-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Design and Synthesis of Dihydroxamic Acids as HDAC6/8/10 Inhibitors.
Chemmedchem, 15, 2020
6VOH
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BU of 6voh by Molmil
Chloroplast ATP synthase (O1, CF1FO)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ...
Authors:Yang, J.-H, Williams, D, Kandiah, E, Fromme, P, Chiu, P.-L.
Deposit date:2020-01-30
Release date:2020-09-09
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (4.16 Å)
Cite:Structural basis of redox modulation on chloroplast ATP synthase.
Commun Biol, 3, 2020
7YXA
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BU of 7yxa by Molmil
XFEL crystal structure of the human sphingosine 1 phosphate receptor 5 in complex with ONO-5430608
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[6-(2-naphthalen-1-ylethoxy)-2,3,4,5-tetrahydro-1H-3-benzazepin-3-ium-3-yl]butanoic acid, ...
Authors:Lyapina, E, Marin, E, Gusach, A, Orekhov, P, Gerasimov, A, Luginina, A, Vakhrameev, D, Ergasheva, M, Kovaleva, M, Khusainov, G, Khorn, P, Shevtsov, M, Kovalev, K, Okhrimenko, I, Bukhdruker, S, Popov, P, Hu, H, Weierstall, U, Liu, W, Cho, Y, Gushchin, I, Rogachev, A, Bourenkov, G, Park, S, Park, G, Huyn, H.J, Park, J, Gordeliy, V, Borshchevskiy, V, Mishin, A, Cherezov, V.
Deposit date:2022-02-15
Release date:2022-08-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for receptor selectivity and inverse agonism in S1P 5 receptors.
Nat Commun, 13, 2022
5FQG
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BU of 5fqg by Molmil
The details of glycolipid glycan hydrolysis by the structural analysis of a family 123 glycoside hydrolase from Clostridium perfringens
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-beta-D-galactopyranose, BETA-N-ACETYLGALACTOSAMINIDASE, FORMIC ACID
Authors:Noach, I, Pluvinage, B, Laurie, C, Abe, K.T, Alteen, M, Vocadlo, D.J, Boraston, A.B.
Deposit date:2015-12-10
Release date:2016-03-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Details of Glycolipid Glycan Hydrolysis by the Structural Analysis of a Family 123 Glycoside Hydrolase from Clostridium Perfringens
J.Mol.Biol., 428, 2016
6Z36
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BU of 6z36 by Molmil
Crystal structure of the ACVR1 (ALK2) kinase in complex with the compound M4K2118
Descriptor: 1,2-ETHANEDIOL, 4-methyl-3-(4-piperidin-4-ylphenyl)-5-(3,4,5-trimethoxyphenyl)pyridine, AMMONIUM ION, ...
Authors:Adamson, R.J, Williams, E.P, Smil, D, Burgess-Brown, N, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.N.
Deposit date:2020-05-19
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Crystal structure of the ACVR1 (ALK2) kinase in complex with the compound M4K2118
To Be Published
5KVG
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BU of 5kvg by Molmil
Zika specific antibody, ZV-67, bound to ZIKA envelope DIII
Descriptor: CHLORIDE ION, ZIKA Envelope DIII, ZV-67 Antibody Fab Heavy Chain, ...
Authors:Zhao, H, Nelson, C.A, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-07-14
Release date:2016-08-03
Last modified:2016-08-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Basis of Zika Virus-Specific Antibody Protection.
Cell, 166, 2016
5ABP
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BU of 5abp by Molmil
SUBSTRATE SPECIFICITY AND AFFINITY OF A PROTEIN MODULATED BY BOUND WATER MOLECULES
Descriptor: L-ARABINOSE-BINDING PROTEIN, alpha-D-galactopyranose, beta-D-galactopyranose
Authors:Quiocho, F.A, Wilson, D.K, Vyas, N.K.
Deposit date:1990-12-26
Release date:1992-10-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate specificity and affinity of a protein modulated by bound water molecules.
Nature, 340, 1989

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