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PDB: 53526 results

6UIB
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BU of 6uib by Molmil
Crystal structure of IL23 bound to peptide 23-652
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-12 subunit beta, Interleukin-23 subunit alpha, ...
Authors:Durbin, J.D, Wang, J, Afshar, S.
Deposit date:2019-09-30
Release date:2020-07-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Integration of phage and yeast display platforms: A reliable and cost effective approach for binning of peptides as displayed on-phage.
Plos One, 15, 2020
7XJV
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BU of 7xjv by Molmil
Crystal Structure of Alpha-1,3-mannosyltransferase MNT2 from Saccharomyces cerevisiae, Mn/GDP-mannose form
Descriptor: Alpha-1,3-mannosyltransferase MNT2, GLYCEROL, GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, ...
Authors:Hira, D, Kadooka, C, Oka, T.
Deposit date:2022-04-18
Release date:2023-05-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Alpha-1,3-mannosyltransferase MNT2 from Saccharomyces cerevisiae, Mn/GDP-mannose form
To Be Published
2FOE
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BU of 2foe by Molmil
Structure of porcine pancreatic elastase in 80% hexane
Descriptor: (2S)-HEX-5-ENE-1,2-DIOL, CALCIUM ION, SULFATE ION, ...
Authors:Mattos, C, Bellamacina, C.R, Peisach, E, Pereira, A, Vitkup, D, Petsko, G.A, Ringe, D.
Deposit date:2006-01-13
Release date:2006-04-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Multiple solvent crystal structures: Probing binding sites, plasticity and hydration
J.Mol.Biol., 357, 2006
5ELJ
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BU of 5elj by Molmil
Isoform-specific inhibition of SUMO-dependent protein-protein interactions
Descriptor: SUMO-Affirmer-S2D5, Small ubiquitin-related modifier 1
Authors:Hughes, D.J, Tiede, C, Hall, N, Tang, A.A.S, Trinh, C.H, Zajac, K, Mandal, U, Howell, G, Edwards, T.A, McPherson, M.J, Tomlinson, D.C, Whitehouse, A.
Deposit date:2015-11-04
Release date:2016-11-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.983 Å)
Cite:Generation of specific inhibitors of SUMO-1- and SUMO-2/3-mediated protein-protein interactions using Affimer (Adhiron) technology.
Sci Signal, 10, 2017
5EFQ
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BU of 5efq by Molmil
Crystal structure of human Cdk13/Cyclin K in complex with ADP-aluminum fluoride
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Cyclin-K, ...
Authors:Hoenig, D, Greifenberg, A.K, Anand, K, Geyer, M.
Deposit date:2015-10-24
Release date:2015-12-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Functional Analysis of the Cdk13/Cyclin K Complex.
Cell Rep, 14, 2016
2G27
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BU of 2g27 by Molmil
Ketopiperazine-Based Renin Inhibitors: Optimization of the "C" Ring
Descriptor: METHYL (6-{[(2R)-1-(4-{3-[(2-METHOXYBENZYL)OXY]PROPOXY}PHENYL)-6-OXOPIPERAZIN-2-YL]METHOXY}-1H-INDOL-1-YL)ACETATE, Renin
Authors:Holsworth, D.D, Jalaiea, M, Zhanga, E, Mcconnella, P.
Deposit date:2006-02-15
Release date:2006-06-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Ketopiperazine-Based Renin Inhibitors: Optimization of the "C" Ring
BIOORG.MED.CHEM.LETT., 16, 2006
2QX6
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BU of 2qx6 by Molmil
Crystal Structure of Quinone Reductase II
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide, Ribosyldihydronicotinamide dehydrogenase [quinone], ...
Authors:Calamini, B, Santarsiero, B.D, Boutin, J.A, Mesecar, A.D.
Deposit date:2007-08-10
Release date:2008-09-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Kinetic, thermodynamic and X-ray structural insights into the interaction of melatonin and analogues with quinone reductase 2.
Biochem.J., 413, 2008
1MJU
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BU of 1mju by Molmil
1.22 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ESTEROLYTIC ANTIBODY MS6-12
Descriptor: GLYCEROL, IMMUNOGLOBULIN MS6-12
Authors:Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W.
Deposit date:2002-08-28
Release date:2003-09-23
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity
J.Mol.Biol., 332, 2003
4LRD
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BU of 4lrd by Molmil
Phosphopentomutase 4H11 variant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MANGANESE (II) ION, ...
Authors:Birmingham, W.A, Starbird, C.A, Panosian, T.D, Nannemann, D.P, Iverson, T.M, Bachmann, B.O.
Deposit date:2013-07-19
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Bioretrosynthetic construction of a didanosine biosynthetic pathway.
Nat.Chem.Biol., 10, 2014
2QWX
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BU of 2qwx by Molmil
Crystal Structure of Quinone Reductase II
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide, Ribosyldihydronicotinamide dehydrogenase [quinone], ...
Authors:Calamini, B, Santarsiero, B.D, Boutin, J.A, Mesecar, A.D.
Deposit date:2007-08-10
Release date:2008-04-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Kinetic, thermodynamic and X-ray structural insights into the interaction of melatonin and analogues with quinone reductase 2.
Biochem.J., 413, 2008
4LTE
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BU of 4lte by Molmil
Structure of Cysteine-free Human Insulin Degrading Enzyme in Complex with Macrocyclic Inhibitor
Descriptor: 2,6-DIAMINO-HEXANOIC ACID AMIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FUMARIC ACID, ...
Authors:Foda, Z.H, Seeliger, M.A, Saghatelian, A, Liu, D.R.
Deposit date:2013-07-23
Release date:2014-05-21
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Anti-diabetic activity of insulin-degrading enzyme inhibitors mediated by multiple hormones.
Nature, 511, 2014
6DK7
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BU of 6dk7 by Molmil
RetS histidine kinase region with cobalt
Descriptor: COBALT (II) ION, RetS (Regulator of Exopolysaccharide and Type III Secretion)
Authors:Mancl, J.M, Schubot, F.D.
Deposit date:2018-05-29
Release date:2019-03-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Helix Cracking Regulates the Critical Interaction between RetS and GacS in Pseudomonas aeruginosa.
Structure, 27, 2019
6DM7
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BU of 6dm7 by Molmil
NMR structure for Sp1 transcription factor duplex 5'-d(GGGGCGGGG)
Descriptor: DNA (5'-D(*CP*CP*CP*CP*GP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*CP*GP*GP*GP*G)-3')
Authors:Davis, E.V, Hennig, M, Arya, D.P.
Deposit date:2018-06-04
Release date:2019-06-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:An NMR Structure Determination and Analysis of Four Sp1 Consensus Sequences
To Be Published
6UKN
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BU of 6ukn by Molmil
Cryo-EM structure of the potassium-chloride cotransporter KCC4 in lipid nanodiscs
Descriptor: CHLORIDE ION, POTASSIUM ION, Solute carrier family 12 member 7, ...
Authors:Reid, M.S, Kern, D.M, Brohawn, S.G.
Deposit date:2019-10-05
Release date:2020-06-10
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Cryo-EM structure of the potassium-chloride cotransporter KCC4 in lipid nanodiscs.
Elife, 9, 2020
4LVF
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BU of 4lvf by Molmil
Fragment-based Identification of Amides Derived From trans-2-(Pyridin-3-yl)cyclopropanecarboxylic Acid as Potent Inhibitors of Human Nicotinamide Phosphoribosyltransferase (NAMPT)
Descriptor: (1S,2S)-2-phenyl-N-(pyridin-4-yl)cyclopropanecarboxamide, 1,2-ETHANEDIOL, Nicotinamide phosphoribosyltransferase, ...
Authors:Giannetti, A.M, Zheng, X, Skelton, N, Wang, W, Bravo, B, Feng, Y, Gunzner-Toste, J, Ho, Y, Hua, R, Wang, C, Zhao, Q, Liederer, B.M, Liu, Y, O'Brien, T, Oeh, J, Sampath, D, Shen, Y, Wang, L, Wu, H, Xiao, Y, Yuen, P, Zak, M, Zhao, G, Dragovich, P.S.
Deposit date:2013-07-26
Release date:2013-09-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Identification of amides derived from 1H-pyrazolo[3,4-b]pyridine-5-carboxylic acid as potent inhibitors of human nicotinamide phosphoribosyltransferase (NAMPT).
Bioorg.Med.Chem.Lett., 23, 2013
4LTR
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BU of 4ltr by Molmil
Bacterial sodium channel, His245Gly mutant, I222 space group
Descriptor: Ion transport protein
Authors:Shaya, D, Findeisen, F, Abderemane-Ali, F, Arrigoni, C, Wong, S, Reddy Nurva, S, Loussouarn, G, Minor, D.L.
Deposit date:2013-07-23
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (5.8 Å)
Cite:Structure of a prokaryotic sodium channel pore reveals essential gating elements and an outer ion binding site common to eukaryotic channels.
J.Mol.Biol., 426, 2014
6DVL
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BU of 6dvl by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with DDK-115
Descriptor: Hdac6 protein, N-[2-(cyclohexylamino)-2-oxoethyl]-N-{[4-(hydroxycarbamoyl)phenyl]methyl}-3,5-dimethylbenzamide, POTASSIUM ION, ...
Authors:Porter, N.J, Christianson, D.W.
Deposit date:2018-06-24
Release date:2018-08-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Histone Deacetylase 6-Selective Inhibitors and the Influence of Capping Groups on Hydroxamate-Zinc Denticity.
J. Med. Chem., 61, 2018
2FX2
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BU of 2fx2 by Molmil
COMPARISON OF THE CRYSTAL STRUCTURES OF A FLAVODOXIN IN ITS THREE OXIDATION STATES AT CRYOGENIC TEMPERATURES
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVODOXIN
Authors:Watt, W, Watenpaugh, K.D.
Deposit date:1991-10-17
Release date:1993-10-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Comparison of the crystal structures of a flavodoxin in its three oxidation states at cryogenic temperatures.
J.Mol.Biol., 218, 1991
2QQQ
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BU of 2qqq by Molmil
Crystal Structure of Novel Immune-Type Receptor 11 Extracellular Fragment from Ictalurus punctatus
Descriptor: Novel immune-type receptor 11
Authors:Ostrov, D.A, Hernandez Prada, J.A, Haire, R.N, Cannon, J.P, Magis, A.T, Bailey, K.M, Litman, G.W.
Deposit date:2007-07-26
Release date:2008-06-10
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:A bony fish immunological receptor of the NITR multigene family mediates allogeneic recognition.
Immunity, 29, 2008
2GBW
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BU of 2gbw by Molmil
Crystal Structure of Biphenyl 2,3-Dioxygenase from Sphingomonas yanoikuyae B1
Descriptor: Biphenyl 2,3-Dioxygenase Alpha Subunit, Biphenyl 2,3-Dioxygenase Beta Subunit, FE (III) ION, ...
Authors:Ferraro, D.J, Brown, E.N, Yu, C, Parales, R.E, Gibson, D.T, Ramaswamy, S.
Deposit date:2006-03-12
Release date:2007-03-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1.
Bmc Struct.Biol., 7, 2007
6UTB
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BU of 6utb by Molmil
CRYSTAL STRUCTURE OF UNLIGANDED HIV-1 LM/HT CLADE A/E CRF01 GP120 CORE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HIV-1 LM/HT Clade A/E CRF01 gp120 core
Authors:Tolbert, W.D, Sherburn, R, Pazgier, M.
Deposit date:2019-10-29
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The HIV-1 Env gp120 Inner Domain Shapes the Phe43 Cavity and the CD4 Binding Site.
Mbio, 11, 2020
6USW
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BU of 6usw by Molmil
CRYSTAL STRUCTURE OF HIV-1 LM/HS CLADE A/E CRF01 GP120 CORE IN COMPLEX WITH (S)-MCG-IV-210
Descriptor: (3S)-N~1~-(2-aminoethyl)-N~3~-(4-chloro-3-fluorophenyl)piperidine-1,3-dicarboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Tolbert, W.D, Sherburn, R, Pazgier, M.
Deposit date:2019-10-28
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The HIV-1 Env gp120 Inner Domain Shapes the Phe43 Cavity and the CD4 Binding Site.
Mbio, 11, 2020
6UOK
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BU of 6uok by Molmil
Y271G DNA polymerase beta substrate complex with templating cytosine and incoming r8-oxo-GTP
Descriptor: 1,2-ETHANEDIOL, 8-OXO-GUANOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ...
Authors:Smith, M.R, Freudenthal, B.D.
Deposit date:2019-10-15
Release date:2020-01-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Molecular and structural characterization of oxidized ribonucleotide insertion into DNA by human DNA polymerase beta.
J.Biol.Chem., 295, 2020
3KUC
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BU of 3kuc by Molmil
Complex of Rap1A(E30D/K31E)GDP with RafRBD(A85K/N71R)
Descriptor: CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Filchtinski, D, Sharabi, O, Rueppel, A, Vetter, I.R, Herrmann, C, Shifman, J.M.
Deposit date:2009-11-27
Release date:2010-03-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf.
J.Mol.Biol., 399, 2010
2FAR
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BU of 2far by Molmil
Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with dATP and Manganese
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
Authors:Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006

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