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PDB: 176 results

4O2I
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The crystal structure of non-LEE encoded type III effector C from Citrobacter rodentium
Descriptor: Non-LEE encoded type III effector C, ZINC ION
Authors:Chang, C, Xu, X, Cui, H, Savchenko, A, Adkins, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Program for the Characterization of Secreted Effector Proteins (PCSEP)
Deposit date:2013-12-17
Release date:2014-01-15
Last modified:2014-05-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of non-LEE encoded type III effector C from Citrobacter rodentium
To be Published
4NO8
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yCP in complex with Z-Leu-Leu-Leu-ketoamide
Descriptor: MAGNESIUM ION, N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S,3S)-2-hydroxy-5-methyl-1-oxo-1-(phenylamino)hexan-3-yl]-L-leucinamide, Probable proteasome subunit alpha type-7, ...
Authors:Stein, M.L, Cui, H, Beck, P, Dubiella, C, Voss, C, Krueger, A, Schmidt, B, Groll, M.
Deposit date:2013-11-19
Release date:2014-02-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Systematic Comparison of Peptidic Proteasome Inhibitors Highlights the alpha-Ketoamide Electrophile as an Auspicious Reversible Lead Motif.
Angew.Chem.Int.Ed.Engl., 53, 2014
4O8O
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Crystal structure of SthAraf62A, a GH62 family alpha-L-arabinofuranosidase from Streptomyces thermoviolaceus, bound to alpha-L-arabinose
Descriptor: Alpha-L-arabinofuranosidase, CALCIUM ION, alpha-L-arabinofuranose
Authors:Stogios, P.J, Wang, W, Xu, X, Cui, H, Master, E, Savchenko, A.
Deposit date:2013-12-28
Release date:2014-07-02
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Elucidation of the molecular basis for arabinoxylan-debranching activity of a thermostable family GH62 alpha-l-arabinofuranosidase from Streptomyces thermoviolaceus.
Appl.Environ.Microbiol., 80, 2014
4NO1
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yCP in complex with Z-Leu-Leu-Leu-B(OH)2
Descriptor: MAGNESIUM ION, N-[(benzyloxy)carbonyl]-L-leucyl-N-[(1R)-1-(dihydroxyboranyl)-3-methylbutyl]-L-leucinamide, Probable proteasome subunit alpha type-7, ...
Authors:Stein, M.L, Cui, H, Beck, P, Dubiella, C, Voss, C, Krueger, A, Schmidt, B, Groll, M.
Deposit date:2013-11-19
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Systematic Comparison of Peptidic Proteasome Inhibitors Highlights the alpha-Ketoamide Electrophile as an Auspicious Reversible Lead Motif.
Angew.Chem.Int.Ed.Engl., 53, 2014
3R1W
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BU of 3r1w by Molmil
Crystal structure of a carbonic anhydrase from a crude oil degrading psychrophilic library
Descriptor: carbonic anhydrase
Authors:Petit, P, Xu, X, Cui, H, Brown, G, Dong, A, Savchenko, A, Yakunin, A.F.
Deposit date:2011-03-11
Release date:2011-03-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of a carbonic anhydrase from a crude oil degrading psychrophilic library
To be Published
4PSU
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BU of 4psu by Molmil
Crystal structure of alpha/beta hydrolase from Rhodopseudomonas palustris CGA009
Descriptor: Alpha/beta hydrolase, DODECAETHYLENE GLYCOL
Authors:Nocek, B, Hajighasemi, M, Xu, X, Cui, H, Savchenko, A, Yakunin, A.
Deposit date:2014-03-07
Release date:2015-03-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of alpha/beta hydrolase from Rhodopseudomonas palustris CGA009
TO BE PUBLISHED
4PV7
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Cocrystal structure of dipeptidyl-peptidase 4 with an indole scaffold inhibitor
Descriptor: 1-[2-(2,4-dichlorophenyl)-1-(methylsulfonyl)-1H-indol-3-yl]methanamine, Dipeptidyl peptidase 4 soluble form
Authors:Xiao, P, Guo, R, Huang, S, Cui, H, Ye, S, Zhang, Z.
Deposit date:2014-03-15
Release date:2015-03-18
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Discovery of dipeptidyl peptidase IV (DPP4) inhibitors based on a novel indole scaffold
Chin.Chem.Lett., 25, 2014
3R0P
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Crystal structure of L-PSP putative endoribonuclease from uncultured organism
Descriptor: L-PSP putative endoribonuclease
Authors:Cuff, M.E, Petit, P, Xu, X, Cui, H, Savchenko, A, Yakunin, A.F.
Deposit date:2011-03-08
Release date:2011-03-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of L-PSP putative endoribonuclease from uncultured organism
To be Published
3PFC
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Crystal structure of the Lactobacillus johnsonii cinnamoyl esterase LJ0536 S106A mutant in complex with ferulic acid
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, CHLORIDE ION, ...
Authors:Stogios, P.J, Lai, K.K, Vu, C, Xu, X, Cui, H, Molloy, S, Gonzalez, C.F, Yakunin, A, Savchenko, A.
Deposit date:2010-10-28
Release date:2011-08-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:An Inserted alpha/beta Subdomain Shapes the Catalytic Pocket of Lactobacillus johnsonii Cinnamoyl Esterase
Plos One, 6, 2011
3PF9
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Crystal structure of the Lactobacillus johnsonii cinnamoyl esterase LJ0536 S106A mutant
Descriptor: Cinnamoyl esterase, SODIUM ION
Authors:Stogios, P.J, Lai, K.K, Vu, C, Xu, X, Cui, H, Molloy, S, Gonzalez, C.F, Yakunin, A, Savchenko, A.
Deposit date:2010-10-28
Release date:2011-08-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:An Inserted alpha/beta Subdomain Shapes the Catalytic Pocket of Lactobacillus johnsonii Cinnamoyl Esterase
Plos One, 6, 2011
3PF8
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Crystal structure of the Lactobacillus johnsonii cinnamoyl esterase LJ0536
Descriptor: Cinnamoyl esterase, SODIUM ION
Authors:Stogios, P.J, Lai, K.K, Vu, C, Xu, X, Cui, H, Molloy, S, Gonzalez, C.F, Yakunin, A, Savchenko, A.
Deposit date:2010-10-28
Release date:2011-08-31
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:An Inserted alpha/beta Subdomain Shapes the Catalytic Pocket of Lactobacillus johnsonii Cinnamoyl Esterase
Plos One, 6, 2011
3PFB
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Crystal structure of the Lactobacillus johnsonii cinnamoyl esterase LJ0536 S106A mutant in complex with ethylferulate
Descriptor: AMMONIUM ION, CHLORIDE ION, Cinnamoyl esterase, ...
Authors:Stogios, P.J, Lai, K.K, Vu, C, Xu, X, Cui, H, Molloy, S, Gonzalez, C.F, Yakunin, A, Savchenko, A.
Deposit date:2010-10-28
Release date:2011-08-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:An Inserted alpha/beta Subdomain Shapes the Catalytic Pocket of Lactobacillus johnsonii Cinnamoyl Esterase
Plos One, 6, 2011
4PVI
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BU of 4pvi by Molmil
Crystal structure of GH62 hydrolase in complex with xylotriose
Descriptor: GH62 hydrolase, PHOSPHATE ION, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
Authors:Nocek, B, Kaur, A.P, Xu, X, Cui, H, Savchenko, A.
Deposit date:2014-03-17
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structure of GH62 hydrolase in complex with xylotriose
TO BE PUBLISHED
3QUF
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The structure of a family 1 extracellular solute-binding protein from Bifidobacterium longum subsp. infantis
Descriptor: ACETIC ACID, Extracellular solute-binding protein, family 1, ...
Authors:Cuff, M.E, Xu, X, Cui, H, Chin, S, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-02-23
Release date:2011-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure of a family 1 extracellular solute-binding protein from Bifidobacterium longum subsp. infantis
TO BE PUBLISHED
4QE7
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Open MthK pore structure soaked in 10 mM Ba2+/100 mM Na+
Descriptor: BARIUM ION, Calcium-gated potassium channel MthK
Authors:Guo, R, Zeng, W, Cui, H, Chen, L, Ye, S.
Deposit date:2014-05-15
Release date:2014-07-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ionic interactions of Ba2+ blockades in the MthK K+ channel
J.Gen.Physiol., 144, 2014
3QVO
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BU of 3qvo by Molmil
Structure of a Rossmann-fold NAD(P)-binding family protein from Shigella flexneri.
Descriptor: 5-MERCAPTO-2-NITRO-BENZOIC ACID, NmrA family protein
Authors:Cuff, M.E, Xu, X, Cui, H, Edwards, A, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-02-25
Release date:2011-06-01
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a Rossmann-fold NAD(P)-binding family protein from Shigella flexneri.
TO BE PUBLISHED
3RAO
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BU of 3rao by Molmil
Crystal Structure of the Luciferase-like Monooxygenase from Bacillus cereus ATCC 10987.
Descriptor: Putative Luciferase-like Monooxygenase, SULFATE ION
Authors:Domagalski, M.J, Chruszcz, M, Xu, X, Cui, H, Chin, S, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-03-28
Release date:2011-05-11
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the Luciferase-like Monooxygenase from Bacillus cereus ATCC 10987.
To be Published
3OI7
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Structure of the structure of the H13A mutant of Ykr043C in complex with sedoheptulose-1,7-bisphosphate
Descriptor: 1,2-ETHANEDIOL, 1,7-di-O-phosphono-beta-D-altro-hept-2-ulofuranose, GLYCEROL, ...
Authors:Singer, A.U, Xu, X, Dong, A, Cui, H, Clasquin, M.F, Caudy, A.A, Edwards, A.M, Savchenko, A, Joachimiak, A, Yakunin, A.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-08-18
Release date:2010-11-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Riboneogenesis in yeast.
Cell(Cambridge,Mass.), 145, 2011
3OMB
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BU of 3omb by Molmil
Crystal structure of extracellular solute-binding protein from Bifidobacterium longum subsp. infantis
Descriptor: Extracellular solute-binding protein, family 1, MAGNESIUM ION
Authors:Chang, C, Xu, X, Chin, S, Cui, H, Dong, A, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-08-26
Release date:2010-09-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of extracellular solute-binding protein from Bifidobacterium longum subsp. infantis
To be Published
3OMD
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Crystal structure of unknown function protein from Leptospirillum rubarum
Descriptor: Uncharacterized protein
Authors:Chang, C, Xu, X, Cui, H, Chen, Z, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-08-26
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of unknown function protein from Leptospirillum rubarum
To be Published
4NO9
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yCP in complex with Z-Leu-Leu-Leu-epoxyketone
Descriptor: MAGNESIUM ION, N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]-L-leucinamide, N-[(benzyloxy)carbonyl]-L-leucyl-N-{(1R,2S)-1-hydroxy-4-methyl-1-[(2R)-2-methyloxiran-2-yl]pentan-2-yl}-L-leucinamide, ...
Authors:Stein, M.L, Cui, H, Beck, P, Dubiella, C, Voss, C, Krueger, A, Schmidt, B, Groll, M.
Deposit date:2013-11-19
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Systematic Comparison of Peptidic Proteasome Inhibitors Highlights the alpha-Ketoamide Electrophile as an Auspicious Reversible Lead Motif.
Angew.Chem.Int.Ed.Engl., 53, 2014
3QM1
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BU of 3qm1 by Molmil
CRYSTAL STRUCTURE OF THE LACTOBACILLUS JOHNSONII CINNAMOYL ESTERASE LJ0536 S106A MUTANT IN COMPLEX WITH ETHYLFERULATE, Form II
Descriptor: CHLORIDE ION, Cinnamoyl esterase, SODIUM ION, ...
Authors:Stogios, P.J, Lai, K.K, Vu, C, Xu, X, Cui, H, Molloy, S, Gonzalez, C.F, Yakunin, A, Savchenko, A.
Deposit date:2011-02-03
Release date:2011-08-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.817 Å)
Cite:An Inserted alpha/beta Subdomain Shapes the Catalytic Pocket of Lactobacillus johnsonii Cinnamoyl Esterase
Plos One, 6, 2011
3S40
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The crystal structure of a diacylglycerol kinases from Bacillus anthracis str. Sterne
Descriptor: diacylglycerol kinase
Authors:Tan, K, Zhang, R, Xu, X, Cui, H, Peterson, S, Savchenko, A, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-05-18
Release date:2011-06-01
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of a diacylglycerol kinases from Bacillus anthracis str. Sterne
To be Published
3SVI
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BU of 3svi by Molmil
Structure of the Pto-binding domain of HopPmaL generated by limited thermolysin digestion
Descriptor: CHLORIDE ION, SODIUM ION, SULFATE ION, ...
Authors:Singer, A.U, Stein, A, Xu, X, Cui, H, Joachimiak, A, Edwards, A.M, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-07-12
Release date:2011-08-10
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Analysis of HopPmaL Reveals the Presence of a Second Adaptor Domain Common to the HopAB Family of Pseudomonas syringae Type III Effectors.
Biochemistry, 51, 2012
3S2Z
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Crystal structure of the Lactobacillus johnsonii cinnamoyl esterase LJ0536 S106A mutant in complex with caffeic acid
Descriptor: CAFFEIC ACID, CHLORIDE ION, Cinnamoyl esterase
Authors:Stogios, P.J, Lai, K.K, Vu, C, Xu, X, Cui, H, Molloy, S, Gonzalez, C.F, Yakunin, A, Savchenko, A.
Deposit date:2011-05-17
Release date:2011-08-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:An inserted alpha/beta subdomain shapes the catalytic pocket of Lactobacillus johnsonii cinnamoyl esterase.
Plos One, 6, 2011

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