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PDB: 251 results

1F3G
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THREE-DIMENSIONAL STRUCTURE OF THE ESCHERICHIA COLI PHOSPHOCARRIER PROTEIN III GLC
Descriptor: GLUCOSE-SPECIFIC PHOSPHOCARRIER PROTEIN IIAGLC
Authors:Worthylake, D, Meadow, N, Roseman, S, Liao, D.-I, Herzberg, O, Remington, S.J.
Deposit date:1991-08-28
Release date:1993-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Three-dimensional structure of the Escherichia coli phosphocarrier protein IIIglc.
Proc.Natl.Acad.Sci.USA, 88, 1991
1PMD
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BU of 1pmd by Molmil
PENICILLIN-BINDING PROTEIN 2X (PBP-2X)
Descriptor: PEPTIDOGLYCAN SYNTHESIS MULTIFUNCTIONAL ENZYME
Authors:Pares, S, Mouz, N, Dideberg, O.
Deposit date:1996-02-05
Release date:1997-02-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:X-ray structure of Streptococcus pneumoniae PBP2x, a primary penicillin target enzyme.
Nat.Struct.Biol., 3, 1996
1RXX
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Structure of arginine deiminase
Descriptor: Arginine deiminase
Authors:Galkin, A, Kulakova, L, Sarikaya, E, Lim, K, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2003-12-18
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural insight into arginine degradation by arginine deiminase, an antibacterial and parasite drug target.
J.Biol.Chem., 279, 2004
1S2V
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Crystal structure of phosphoenolpyruvate mutase complexed with Mg(II)
Descriptor: MAGNESIUM ION, Phosphoenolpyruvate phosphomutase
Authors:Liu, S, Lu, Z, Han, Y, Jia, Y, Howard, A, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2004-01-11
Release date:2004-05-04
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational Flexibility of PEP Mutase
Biochemistry, 43, 2004
1DBU
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BU of 1dbu by Molmil
Crystal structure of cysteinyl-tRNA(Pro) deacylase protein from H. influenzae (HI1434)
Descriptor: MERCURY (II) ION, cysteinyl-tRNA(Pro) deacylase
Authors:Zhang, H, Huang, K, Li, Z, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:1999-11-03
Release date:2000-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications.
Proteins, 40, 2000
1ORT
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BU of 1ort by Molmil
ORNITHINE TRANSCARBAMOYLASE FROM PSEUDOMONAS AERUGINOSA
Descriptor: ORNITHINE TRANSCARBAMOYLASE
Authors:Villeret, V, Dideberg, O.
Deposit date:1995-08-24
Release date:1996-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of Pseudomonas aeruginosa catabolic ornithine transcarbamoylase at 3.0-A resolution: a different oligomeric organization in the transcarbamoylase family.
Proc.Natl.Acad.Sci.USA, 92, 1995
2ABR
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BU of 2abr by Molmil
Structure of D280A arginine deiminase with L-arginine forming a S-alkylthiouronium reaction intermediate
Descriptor: Arginine deiminase
Authors:Galkin, A, Lu, X, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2005-07-15
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structures Representing the Michaelis Complex and the Thiouronium Reaction Intermediate of Pseudomonas aeruginosa Arginine Deiminase.
J.Biol.Chem., 280, 2005
1BSG
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BETA-LACTAMASE FROM STREPTOMYCES ALBUS G
Descriptor: ACETATE ION, BETA LACTAMASE
Authors:Fonze, E, Charlier, P, Dideberg, O.
Deposit date:1998-07-20
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:

2V2F
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Crystal structure of PBP1a from drug-resistant strain 5204 from Streptococcus pneumoniae
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BARIUM ION, PENICILLIN BINDING PROTEIN 1A
Authors:Job, V, Carapito, R, Vernet, T, Dideberg, O, Dessen, A, Zapun, A.
Deposit date:2007-06-05
Release date:2007-12-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Common Alterations in Pbp1A from Resistant Streptococcus Pneumoniae Decrease its Reactivity Toward {Beta}-Lactams: Structural Insights.
J.Biol.Chem., 283, 2008
5TIB
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BU of 5tib by Molmil
Gasdermin-B C-terminal domain containing the polymorphism residues Arg299:Ser306 fused to maltose binding protein
Descriptor: ACETATE ION, SODIUM ION, Sugar ABC transporter substrate-binding protein,Gasdermin-B, ...
Authors:Chao, K, Herzberg, O.
Deposit date:2016-10-01
Release date:2017-02-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Human Gasdermin-B and disease: Sulfatide Binding, Caspase cleavage, and Structural impact of Asthma- and IBS-Associated Polymorphism
Proc.Natl.Acad.Sci.Usa, 2017
5TJ2
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Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Ser306 fused to maltose binding protein
Descriptor: Sugar ABC transporter substrate-binding protein,Gasdermin-B fusion protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Chao, L.K, Herzberg, O.
Deposit date:2016-10-03
Release date:2017-02-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Human Gasdermin-B and disease: Sulfatide Binding, Caspase cleavage, and Structural impact of Asthma- and IBS-Associated Polymorphism
Proc.Natl.Acad.Sci.Usa, 2017
5TJ4
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BU of 5tj4 by Molmil
Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Pro306 fused to maltose binding protein
Descriptor: SODIUM ION, Sugar ABC transporter substrate-binding protein,Gasdermin-B fusion protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Chao, L.K, Herzberg, O.
Deposit date:2016-10-03
Release date:2017-02-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Gene polymorphism linked to increased asthma and IBD risk alters gasdermin-B structure, a sulfatide and phosphoinositide binding protein.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4IPY
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BU of 4ipy by Molmil
HIV capsid C-terminal domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein p24
Authors:Lampel, A, Yaniv, O, Berger, O, Bachrach, E, Gazit, E, Frolow, F.
Deposit date:2013-01-10
Release date:2013-10-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:A triclinic crystal structure of the carboxy-terminal domain of HIV-1 capsid protein with four molecules in the asymmetric unit reveals a novel packing interface.
Acta Crystallogr.,Sect.F, 69, 2013
4FWW
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Crystal structure of the Sema-PSI extracellular domains of human RON receptor tyrosine kinase
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Chao, K.L, Herzberg, O.
Deposit date:2012-07-02
Release date:2012-08-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of the Sema-PSI Extracellular Domain of Human RON Receptor Tyrosine Kinase.
Plos One, 7, 2012
4LWS
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BU of 4lws by Molmil
EsxA : EsxB (SeMet) hetero-dimer from Thermomonospora curvata
Descriptor: ACETATE ION, GLYCEROL, Uncharacterized protein
Authors:Dovala, D.L, Cox, J.S, Stroud, R.M, Rosenberg, O.S.
Deposit date:2013-07-28
Release date:2015-02-04
Last modified:2016-09-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion.
Cell(Cambridge,Mass.), 161, 2015
4JZ9
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Carbamate kinase from Giardia lamblia bound to citric acid
Descriptor: CITRIC ACID, Carbamate kinase
Authors:Lim, K, Herzberg, O.
Deposit date:2013-04-02
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
Plos One, 8, 2013
4JZ8
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Carbamate kinase from Giardia lamblia bound to citric acid
Descriptor: CITRIC ACID, Carbamate kinase
Authors:Lim, K, Herzberg, O.
Deposit date:2013-04-02
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
Plos One, 8, 2013
4JZ7
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BU of 4jz7 by Molmil
Carbamate kinase from Giardia lamblia bound to AMP-PNP
Descriptor: Carbamate kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Lim, K, Herzberg, O.
Deposit date:2013-04-02
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of Carbamate Kinase from Giardia lamblia Bound with Citric Acid and AMP-PNP.
Plos One, 8, 2013
4N1A
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BU of 4n1a by Molmil
Thermomonospora curvata EccC (ATPases 2 and 3) in complex with a signal sequence peptide
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell divisionFtsK/SpoIIIE, MAGNESIUM ION, ...
Authors:Dovala, D.L, Bendebury, A, Cox, J.S, Stroud, R.M, Rosenberg, O.S.
Deposit date:2013-10-03
Release date:2015-02-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion.
Cell(Cambridge,Mass.), 161, 2015
3L2E
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BU of 3l2e by Molmil
Glycocyamine kinase, alpha-beta heterodimer from marine worm Namalycastis sp.
Descriptor: Glycocyamine kinase alpha chain, Glycocyamine kinase beta chain
Authors:Lim, K, Pullalarevu, S, Herzberg, O.
Deposit date:2009-12-15
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
Biochemistry, 49, 2010
4GAH
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BU of 4gah by Molmil
Human acyl-CoA thioesterases 4 in complex with undecan-2-one-CoA inhibitor
Descriptor: Thioesterase superfamily member 4, [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-[2-[(2R)-2-oxidanylundecyl]sulfanylethylamino]propyl]amino]butyl] hydrogen phosphate
Authors:Lim, K, Pathak, M.C, Herzberg, O.
Deposit date:2012-07-25
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Correlation of structure and function in the human hotdog-fold enzyme hTHEM4.
Biochemistry, 51, 2012
3L2D
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Glycocyamine kinase, beta-beta homodimer from marine worm Namalycastis sp.
Descriptor: Glycocyamine kinase beta chain
Authors:Lim, K, Pullalarevu, S, Herzberg, O.
Deposit date:2009-12-15
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the mechanism and substrate specificity of glycocyamine kinase, a phosphagen kinase family member.
Biochemistry, 49, 2010
4LYA
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EssC (ATPases 2 and 3) from Geobacillus thermodenitrificans (SeMet)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Uncharacterized protein
Authors:Dovala, D.L, Bendebury, A, Cox, J.S, Stroud, R.M, Rosenberg, O.S.
Deposit date:2013-07-30
Release date:2015-02-04
Last modified:2016-09-21
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion.
Cell(Cambridge,Mass.), 161, 2015
4MSX
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Crystal structure of an essential yeast splicing factor
Descriptor: ACETATE ION, Pre-mRNA-splicing factor SAD1, ZINC ION
Authors:Hadjivassiliou, H, Guthrie, C, Rosenberg, O.S.
Deposit date:2013-09-18
Release date:2014-04-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:The crystal structure of S. cerevisiae Sad1, a catalytically inactive deubiquitinase that is broadly required for pre-mRNA splicing.
Rna, 20, 2014
3KZF
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Structure of Giardia Carbamate Kinase
Descriptor: Carbamate kinase, GLYCEROL
Authors:Galkin, A, Herzberg, O.
Deposit date:2009-12-08
Release date:2010-04-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia.
Acta Crystallogr.,Sect.F, 66, 2010

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